Chy4G069490 (gene) Cucumber (hystrix) v1

Overview


Name	Chy4G069490
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	28 kDa ribonucleoprotein, chloroplastic-like
Location	chrH04: 2078889 .. 2080674 (+)
RNA-Seq Expression	Chy4G069490
Synteny	Chy4G069490

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTCGGTTCGTCTTCCTTGTTCTTCATCTTCCTCAATCTTTCGATCTAAACAACACCACCAGATTTTTCTCGCACCTCTCTCATGTTCGCAAAATCCATCTTATCCCATCAATGGGGACTTCAATCTCTCTATCTCCCGCTCTTCTCCATCTCTTCTTTCAACTTCCATCAGCCACAATCCTTTGATTTCAATTAGAGCTAAGAGAACCAGCACGTTTGTTTTCCAGTTCGCTTCAACATCCCAAGACGAAGCAGTTTCCTCGCCTTCTGATACTGAAGAATTTTCTCAAACTAGATTGCTTGCTCAGAATGTGCCTTGGGATTCTACTCCTGAGGATATTCGTTCTCTGTTTGAGAAATATGGTACGGTCCTGGATGTGGAGGTATGCAACATTAGTTTGTTTTAGTGTAAGAACATTTTCTCTTTCAATTTCTGTTTGACGGTTTTGGTTTATTGTAAATTGATGACCGGTGTCTTTCTGTCAGCTTTCAATGTATAACAAGATTAGAAACAGAGGCTTGGCGTTTGTCACTATGGGATCACCGGAGGAGGCCCTTGCTGCGCTTAACAATCTCGAATCGTATGTAAGCAGGATAATGTTTTTCTTAATTAGAATGATTTTCAATTTTTTTTTACTGTGTCCAATTTCGTCACTGAGAATTAAAACAATGTTTACCCTCCATTATGAAATAACTCTCTCGATAGAAATTAATCGCGTTTGACTCTAGTTTGATTTGCTTCCACGTGATCCATAAATAGAGTCGAACATAGTAAAACAAGCAATTGAACGATTTTGATGAAATTGTTCGTTTGGAAATTTCCTGAGAAGATATCATAGATTCTTCTTTCAATCGGAACAATCGGGTCGTTATGCTTATTACAAAACTTGTTGAAGAGATGAAATGTAACCAAGATATATCTTTTTTATTAGAGCTTGAATGGATTATCGGACGAAGAACTAGGCAAAAAAAAAAAAAAAAAAAAAGCGGATAAATTCTCGGAAAATAAAACTAAGCTTGCATCCTGCTTGTGTGTGTTGCAGCTGCATTTCAATTTTGGTTAAAGCAAAGTATATGGTCTTTCCATTCATTTCAAAACTTAGATGATCCATTCCCGTATTAAACATGAATCTTCTGATTCATTTGCCTTTCACTCCCATTTATTGCAATTGTTTCTGTCTCTAAGAAATTCCCATTTGTTATTTTTAACTCTTGTTGGCTTTATTTAATGAAATGGTTAACATAAATGCAGGAATTTGAGGGTCGGACTCTGAGGCTCAATTATGCTAAGCTCAAAAAAGAGAAACCCTCCCCTCCTGTTAAACCAAAACCCGTTACGTTTAATTTGTTTGTGGCAAATTTACCATTTGATGCAAGAGCAAAGGACCTCAAAGAGTTCTTCGATTCAGGGAGTGGTAATGTAGTTTCTGCACAAATTATTTTTAATGAGAATCCGAGAAGGTCTTCTGGATATGGTTTTGTTGCCTTCAAAACCAAGAAGGATGCTGAAGCAGCTATTTCCGAGTTCCAAGGGAAGGTAATTTCAATATTGTTACAACCCCCTTTATTAAATGAATAGCCATAGAACCATTCAAATGTGAATATCACCATTTTTATGGGGCTTCATCTGATTAAGTGCAGACTTTTATGGGGAGATCACTACGTGTTGCACGTAGTAAGCAGTTCGTGAAACTTCCTTCAGAAGAGAAACCCCAATCTGAAGATGCATCTACTGATGGTGTGGAGCTAGCCAATGCCGCTGCTGAAGTTTTAAATACTTAA

mRNA sequence

ATGGCTTCGGTTCGTCTTCCTTGTTCTTCATCTTCCTCAATCTTTCGATCTAAACAACACCACCAGATTTTTCTCGCACCTCTCTCATGTTCGCAAAATCCATCTTATCCCATCAATGGGGACTTCAATCTCTCTATCTCCCGCTCTTCTCCATCTCTTCTTTCAACTTCCATCAGCCACAATCCTTTGATTTCAATTAGAGCTAAGAGAACCAGCACGTTTGTTTTCCAGTTCGCTTCAACATCCCAAGACGAAGCAGTTTCCTCGCCTTCTGATACTGAAGAATTTTCTCAAACTAGATTGCTTGCTCAGAATGTGCCTTGGGATTCTACTCCTGAGGATATTCGTTCTCTGTTTGAGAAATATGGTACGGTCCTGGATGTGGAGCTTTCAATGTATAACAAGATTAGAAACAGAGGCTTGGCGTTTGTCACTATGGGATCACCGGAGGAGGCCCTTGCTGCGCTTAACAATCTCGAATCGTATGAATTTGAGGGTCGGACTCTGAGGCTCAATTATGCTAAGCTCAAAAAAGAGAAACCCTCCCCTCCTGTTAAACCAAAACCCGTTACGTTTAATTTGTTTGTGGCAAATTTACCATTTGATGCAAGAGCAAAGGACCTCAAAGAGTTCTTCGATTCAGGGAGTGGTAATGTAGTTTCTGCACAAATTATTTTTAATGAGAATCCGAGAAGGTCTTCTGGATATGGTTTTGTTGCCTTCAAAACCAAGAAGGATGCTGAAGCAGCTATTTCCGAGTTCCAAGGGAAGACTTTTATGGGGAGATCACTACGTGTTGCACGTAGTAAGCAGTTCGTGAAACTTCCTTCAGAAGAGAAACCCCAATCTGAAGATGCATCTACTGATGGTGTGGAGCTAGCCAATGCCGCTGCTGAAGTTTTAAATACTTAA

Coding sequence (CDS)

ATGGCTTCGGTTCGTCTTCCTTGTTCTTCATCTTCCTCAATCTTTCGATCTAAACAACACCACCAGATTTTTCTCGCACCTCTCTCATGTTCGCAAAATCCATCTTATCCCATCAATGGGGACTTCAATCTCTCTATCTCCCGCTCTTCTCCATCTCTTCTTTCAACTTCCATCAGCCACAATCCTTTGATTTCAATTAGAGCTAAGAGAACCAGCACGTTTGTTTTCCAGTTCGCTTCAACATCCCAAGACGAAGCAGTTTCCTCGCCTTCTGATACTGAAGAATTTTCTCAAACTAGATTGCTTGCTCAGAATGTGCCTTGGGATTCTACTCCTGAGGATATTCGTTCTCTGTTTGAGAAATATGGTACGGTCCTGGATGTGGAGCTTTCAATGTATAACAAGATTAGAAACAGAGGCTTGGCGTTTGTCACTATGGGATCACCGGAGGAGGCCCTTGCTGCGCTTAACAATCTCGAATCGTATGAATTTGAGGGTCGGACTCTGAGGCTCAATTATGCTAAGCTCAAAAAAGAGAAACCCTCCCCTCCTGTTAAACCAAAACCCGTTACGTTTAATTTGTTTGTGGCAAATTTACCATTTGATGCAAGAGCAAAGGACCTCAAAGAGTTCTTCGATTCAGGGAGTGGTAATGTAGTTTCTGCACAAATTATTTTTAATGAGAATCCGAGAAGGTCTTCTGGATATGGTTTTGTTGCCTTCAAAACCAAGAAGGATGCTGAAGCAGCTATTTCCGAGTTCCAAGGGAAGACTTTTATGGGGAGATCACTACGTGTTGCACGTAGTAAGCAGTTCGTGAAACTTCCTTCAGAAGAGAAACCCCAATCTGAAGATGCATCTACTGATGGTGTGGAGCTAGCCAATGCCGCTGCTGAAGTTTTAAATACTTAA

Protein sequence

MASVRLPCSSSSSIFRSKQHHQIFLAPLSCSQNPSYPINGDFNLSISRSSPSLLSTSISHNPLISIRAKRTSTFVFQFASTSQDEAVSSPSDTEEFSQTRLLAQNVPWDSTPEDIRSLFEKYGTVLDVELSMYNKIRNRGLAFVTMGSPEEALAALNNLESYEFEGRTLRLNYAKLKKEKPSPPVKPKPVTFNLFVANLPFDARAKDLKEFFDSGSGNVVSAQIIFNENPRRSSGYGFVAFKTKKDAEAAISEFQGKTFMGRSLRVARSKQFVKLPSEEKPQSEDASTDGVELANAAAEVLNT*

Homology

[Close]

BLAST of Chy4G069490 vs. ExPASy Swiss-Prot
Match: P19682 (28 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=1 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 2.4e-21
Identity = 72/239 (30.13%), Postives = 125/239 (52.30%), Query Frame = 0


Query: 44  LSISRSSPSLLS---TSISHNPLISIRAKRTSTFVFQFASTSQD--EAVSSPSDTEEFSQ 103
           +S+S S P+LLS    +      +S+ ++  +T V        D    V    +TEE+ +
Sbjct: 33  ISLSSSLPTLLSLNKRTTQFPTFVSVLSEDDNTLVLDDQEQGGDFPSFVGEAGETEEYQE 92

Query: 104 ----TRLLAQNVPWDSTPEDIRSLFEKYGTVLDVELSMYNK--IRNRGLAFVTMGSPEEA 163
                +L   N+P+D   E +  LF++ G V+++   +YN+   R+RG  FVTM + EEA
Sbjct: 93  PSEDAKLFVGNLPYDIDSEGLAQLFQQAG-VVEIAEVIYNRETDRSRGFGFVTMSTVEEA 152

Query: 164 LAALNNLESYEFEGRTLRLNYAKLKKEKPSPPVKPKPVTFNLFVANLPFDARAKDLKEFF 223
             A+     Y+  GR L +N A  +  +P    +    T+ ++V N+P+D     L++ F
Sbjct: 153 DKAVELYSQYDLNGRLLTVNKAAPRGSRPERAPRTFQPTYRIYVGNIPWDIDDARLEQVF 212

Query: 224 DSGSGNVVSAQIIFNENPRRSSGYGFVAFKTKKDAEAAISEFQGKTFMGRSLRVARSKQ 272
            S  G VVSA+++F+    RS G+GFV   ++ +   AI+   G+T  GR++RV  +++
Sbjct: 213 -SEHGKVVSARVVFDRESGRSRGFGFVTMSSEAEMSEAIANLDGQTLDGRTIRVNAAEE 269

[Close]

BLAST of Chy4G069490 vs. ExPASy Swiss-Prot
Match: Q39061 (RNA-binding protein CP33, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CP33 PE=2 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 9.0e-21
Identity = 84/287 (29.27%), Postives = 150/287 (52.26%), Query Frame = 0


Query: 42  FNLSISRSSPSLLSTSI-SHNPLISIRAKRTSTFVFQFASTSQDEAVSSPSD-----TEE 101
           F L  +  +P +L ++I  H    +   + +S      AS  ++E V    D      EE
Sbjct: 45  FKLVANCPNPLILHSNIRRHRFFCAAETEASSADDEIQASVEEEEEVEEEGDEGEEEVEE 104

Query: 102 FSQT--------RLLAQNVPWDSTPEDIRSLFEKYGTVLDVELSMYNKI--RNRGLAFVT 161
             QT        RL   N+P+  T  ++  +F + GTV+DV++ +Y+K+  R+RG  FVT
Sbjct: 105 EKQTTQASGEEGRLYVGNLPYTITSSELSQIFGEAGTVVDVQI-VYDKVTDRSRGFGFVT 164

Query: 162 MGSPEEALAALNNLESYEFEGRTLRLNYAKLKKEKPSPPVKPKPVTFN---------LFV 221
           MGS EEA  A+    S +  GRT+++N+ ++ +   +  ++ K    N         ++ 
Sbjct: 165 MGSIEEAKEAMQMFNSSQIGGRTVKVNFPEVPRGGENEVMRTKIRDNNRSYVDSPHKVYA 224

Query: 222 ANLPFDARAKDLKEFFDSGSGNVVSAQIIFNENPRRSSGYGFVAFKTKKDAEAAISEFQG 281
            NL ++  ++ LK+ F    G V+ A++I+  N  RS G+GF++F++ ++ ++A++   G
Sbjct: 225 GNLGWNLTSQGLKDAFGDQPG-VLGAKVIYERNTGRSRGFGFISFESAENVQSALATMNG 284

Query: 282 KTFMGRSLRV----ARSKQFVKLPSEEKPQSEDASTDGVE-LANAAA 299
               GR+LR+     R K  V  PS E+ ++E+AS +  E L+N +A
Sbjct: 285 VEVEGRALRLNLASEREKPTVSPPSVEEGETEEASLESNEVLSNVSA 329

[Close]

BLAST of Chy4G069490 vs. ExPASy Swiss-Prot
Match: P19683 (31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=1 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 1.5e-20
Identity = 61/199 (30.65%), Postives = 107/199 (53.77%), Query Frame = 0


Query: 74  FVFQFASTSQDEAVSSPSDTEEFSQ----TRLLAQNVPWDSTPEDIRSLFEKYGTVLDVE 133
           FV       + + V +  + EEF +     +L   N+P+D   E +  LFE+ G V+++ 
Sbjct: 107 FVEAVGDAGESDEVEADEEEEEFQEPPEDAKLFVGNLPYDVDSEGLARLFEQAG-VVEIA 166

Query: 134 LSMYNK--IRNRGLAFVTMGSPEEALAALNNLESYEFEGRTLRLNYAKLKKEKPSPPVKP 193
             +YN+   ++RG  FVTM + EEA  A+     Y+  GR L +N A  + E+P  P + 
Sbjct: 167 EVIYNRDTDQSRGFGFVTMSTVEEAEKAVEMYNRYDVNGRLLTVNKAARRGERPERPPRT 226

Query: 194 KPVTFNLFVANLPFDARAKDLKEFFDSGSGNVVSAQIIFNENPRRSSGYGFVAFKTKKDA 253
              ++ ++V N+P+      L++ F S  G VVSA+++++    RS G+GFV   ++ + 
Sbjct: 227 FEQSYRIYVGNIPWGIDDARLEQLF-SEHGKVVSARVVYDRETGRSRGFGFVTMASEAEM 286

Query: 254 EAAISEFQGKTFMGRSLRV 267
             AI+   G++  GR++RV
Sbjct: 287 SDAIANLDGQSLDGRTIRV 303

[Close]

BLAST of Chy4G069490 vs. ExPASy Swiss-Prot
Match: Q9FGS0 (RNA-binding protein CP31B, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CP31B PE=1 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 1.3e-19
Identity = 60/189 (31.75%), Postives = 98/189 (51.85%), Query Frame = 0


Query: 80  STSQDEAVSSPSDTEEFSQTRLLAQNVPWDSTPEDIRSLFEKYGTVLDVELSMYNK--IR 139
           S   ++ V  P   EE    +L   N+P+D   + +  LFE+ GTV ++   +YN+   +
Sbjct: 97  SFESEDGVGFPEPPEE---AKLFVGNLPYDVDSQALAMLFEQAGTV-EISEVIYNRDTDQ 156

Query: 140 NRGLAFVTMGSPEEALAALNNLESYEFEGRTLRLNYAKLKKEKPSPPVKPKPVTFNLFVA 199
           +RG  FVTM + EEA  A+    S+E  GR L +N A  +  +P    +     F ++V 
Sbjct: 157 SRGFGFVTMSTVEEAEKAVEKFNSFEVNGRRLTVNRAAPRGSRPERQPRVYDAAFRIYVG 216

Query: 200 NLPFDARAKDLKEFFDSGSGNVVSAQIIFNENPRRSSGYGFVAFKTKKDAEAAISEFQGK 259
           NLP+D  +  L+  F S  G VV A+++ +    RS G+GFV    + +   AI+   G+
Sbjct: 217 NLPWDVDSGRLERLF-SEHGKVVDARVVSDRETGRSRGFGFVQMSNENEVNVAIAALDGQ 276

Query: 260 TFMGRSLRV 267
              GR+++V
Sbjct: 277 NLEGRAIKV 280

[Close]

BLAST of Chy4G069490 vs. ExPASy Swiss-Prot
Match: P28644 (28 kDa ribonucleoprotein, chloroplastic OS=Spinacia oleracea OX=3562 PE=1 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 1.9e-18
Identity = 57/176 (32.39%), Postives = 95/176 (53.98%), Query Frame = 0


Query: 93  TEEFSQTRLLAQNVPWDSTPEDIRSLFEKYGTVLDVELSMYNK--IRNRGLAFVTMGSPE 152
           +E   + +L   N+P+D   E +  +F+  G V+++   +YN+   R+RG  FVTM + E
Sbjct: 49  SEPPEEAKLFVGNLPYDVDSEKLAGIFDAAG-VVEIAEVIYNRETDRSRGFGFVTMSTVE 108

Query: 153 EALAALNNLESYEFEGRTLRLNYAKLKKEKPSPPVKPKPVTFNLFVANLPFDARAKDLKE 212
           EA  A+  L  Y+ +GR L +N A  +      P      +  ++V NLP+D     L++
Sbjct: 109 EAEKAVELLNGYDMDGRQLTVNKAAPRGSPERAPRGDFEPSCRVYVGNLPWDVDTSRLEQ 168

Query: 213 FFDSGSGNVVSAQIIFNENPRRSSGYGFVAFKTKKDAEAAISEFQGKTFMGRSLRV 267
            F S  G VVSA+++ +    RS G+GFV   ++ +   AI+   G+T  GR++RV
Sbjct: 169 LF-SEHGKVVSARVVSDRETGRSRGFGFVTMSSESEVNDAIAALDGQTLDGRAVRV 222

[Close]

BLAST of Chy4G069490 vs. ExPASy TrEMBL
Match: A0A0A0LEN0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G889940 PE=4 SV=1)

HSP 1 Score: 572.0 bits (1473), Expect = 1.5e-159
Identity = 297/300 (99.00%), Postives = 298/300 (99.33%), Query Frame = 0


Query: 1   MASVRLPCSSSSSIFRSKQHHQIFLAPLSCSQNPSYPINGDFNLSISRSSPSLLSTSISH 60
           MASVRLPCSSSSSI RSK HHQIFLAPLSCSQNPSYPINGDFNLSISRSSPSLLSTSISH
Sbjct: 1   MASVRLPCSSSSSILRSKHHHQIFLAPLSCSQNPSYPINGDFNLSISRSSPSLLSTSISH 60

Query: 61  NPLISIRAKRTSTFVFQFASTSQDEAVSSPSDTEEFSQTRLLAQNVPWDSTPEDIRSLFE 120
           +PLISIRAKRTSTFVFQFASTSQDEAVSSPSDTEEFSQTRLLAQNVPWDSTPEDIRSLFE
Sbjct: 61  SPLISIRAKRTSTFVFQFASTSQDEAVSSPSDTEEFSQTRLLAQNVPWDSTPEDIRSLFE 120

Query: 121 KYGTVLDVELSMYNKIRNRGLAFVTMGSPEEALAALNNLESYEFEGRTLRLNYAKLKKEK 180
           KYGTVLDVELSMYNKIRNRGLAFVTMGSPEEALAALNNLESYEFEGRTLRLNYAKLKKEK
Sbjct: 121 KYGTVLDVELSMYNKIRNRGLAFVTMGSPEEALAALNNLESYEFEGRTLRLNYAKLKKEK 180

Query: 181 PSPPVKPKPVTFNLFVANLPFDARAKDLKEFFDSGSGNVVSAQIIFNENPRRSSGYGFVA 240
           PSPPVKPKPVTFNLFVANLPFDARAKDLKEFFDSGSGNVVSAQIIFNENPRRSSGYGFVA
Sbjct: 181 PSPPVKPKPVTFNLFVANLPFDARAKDLKEFFDSGSGNVVSAQIIFNENPRRSSGYGFVA 240

Query: 241 FKTKKDAEAAISEFQGKTFMGRSLRVARSKQFVKLPSEEKPQSEDASTDGVELANAAAEV 300
           FKTKKDAEAAISEFQGKTFMGRSLRVARSKQFVKLPSEEKPQSEDASTDGVELANAAAEV
Sbjct: 241 FKTKKDAEAAISEFQGKTFMGRSLRVARSKQFVKLPSEEKPQSEDASTDGVELANAAAEV 300

[Close]

BLAST of Chy4G069490 vs. ExPASy TrEMBL
Match: A0A5A7TBD1 (31 kDa ribonucleoprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G005930 PE=4 SV=1)

HSP 1 Score: 548.9 bits (1413), Expect = 1.3e-152
Identity = 287/301 (95.35%), Postives = 292/301 (97.01%), Query Frame = 0


Query: 1   MASVRLPCSSSSSIFRSKQHHQIFLAPLSCSQNPSYPINGDFNLSISRSSPSLLSTSISH 60
           MASVRLPCSSSSSI RSKQHH IFLAPLSCSQNPSYPINGDFNLS+SRSSPSLLSTSI H
Sbjct: 1   MASVRLPCSSSSSILRSKQHHHIFLAPLSCSQNPSYPINGDFNLSVSRSSPSLLSTSICH 60

Query: 61  NPLISIRAKRTSTFVFQFASTSQDEAV-SSPSDTEEFSQTRLLAQNVPWDSTPEDIRSLF 120
           NPLISI AKRTS FVFQFASTSQDEAV SSPSD EEFS+TRLLAQNVPWDSTPEDIRSLF
Sbjct: 61  NPLISIMAKRTSKFVFQFASTSQDEAVSSSPSDIEEFSRTRLLAQNVPWDSTPEDIRSLF 120

Query: 121 EKYGTVLDVELSMYNKIRNRGLAFVTMGSPEEALAALNNLESYEFEGRTLRLNYAKLKKE 180
           EKYGTVLDVELSMYNKIRNRGLAFVTMGSPEEALAALNNLESYEFEGRTLRLNYAKLKKE
Sbjct: 121 EKYGTVLDVELSMYNKIRNRGLAFVTMGSPEEALAALNNLESYEFEGRTLRLNYAKLKKE 180

Query: 181 KPSPPVKPKPVTFNLFVANLPFDARAKDLKEFFDSGSGNVVSAQIIFNENPRRSSGYGFV 240
           KPSPPVKPKPVTFNLFVANLPF+ARAKDL+EFFDSGSGNVVSAQIIF+ENPRRSSGYGFV
Sbjct: 181 KPSPPVKPKPVTFNLFVANLPFEARAKDLREFFDSGSGNVVSAQIIFHENPRRSSGYGFV 240

Query: 241 AFKTKKDAEAAISEFQGKTFMGRSLRVARSKQFVKLPSEEKPQSEDASTDGVELANAAAE 300
           AFK KKDAEAAISEFQGKTFMGRSLRVARSKQFVKLPSEEK QSEDASTDGVELANAAAE
Sbjct: 241 AFKAKKDAEAAISEFQGKTFMGRSLRVARSKQFVKLPSEEKSQSEDASTDGVELANAAAE 300

[Close]

BLAST of Chy4G069490 vs. ExPASy TrEMBL
Match: A0A1S3CS17 (31 kDa ribonucleoprotein, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103503681 PE=4 SV=1)

HSP 1 Score: 548.9 bits (1413), Expect = 1.3e-152
Identity = 287/301 (95.35%), Postives = 292/301 (97.01%), Query Frame = 0


Query: 1   MASVRLPCSSSSSIFRSKQHHQIFLAPLSCSQNPSYPINGDFNLSISRSSPSLLSTSISH 60
           MASVRLPCSSSSSI RSKQHH IFLAPLSCSQNPSYPINGDFNLS+SRSSPSLLSTSI H
Sbjct: 1   MASVRLPCSSSSSILRSKQHHHIFLAPLSCSQNPSYPINGDFNLSVSRSSPSLLSTSICH 60

Query: 61  NPLISIRAKRTSTFVFQFASTSQDEAV-SSPSDTEEFSQTRLLAQNVPWDSTPEDIRSLF 120
           NPLISI AKRTS FVFQFASTSQDEAV SSPSD EEFS+TRLLAQNVPWDSTPEDIRSLF
Sbjct: 61  NPLISIMAKRTSKFVFQFASTSQDEAVSSSPSDIEEFSRTRLLAQNVPWDSTPEDIRSLF 120

Query: 121 EKYGTVLDVELSMYNKIRNRGLAFVTMGSPEEALAALNNLESYEFEGRTLRLNYAKLKKE 180
           EKYGTVLDVELSMYNKIRNRGLAFVTMGSPEEALAALNNLESYEFEGRTLRLNYAKLKKE
Sbjct: 121 EKYGTVLDVELSMYNKIRNRGLAFVTMGSPEEALAALNNLESYEFEGRTLRLNYAKLKKE 180

Query: 181 KPSPPVKPKPVTFNLFVANLPFDARAKDLKEFFDSGSGNVVSAQIIFNENPRRSSGYGFV 240
           KPSPPVKPKPVTFNLFVANLPF+ARAKDL+EFFDSGSGNVVSAQIIF+ENPRRSSGYGFV
Sbjct: 181 KPSPPVKPKPVTFNLFVANLPFEARAKDLREFFDSGSGNVVSAQIIFHENPRRSSGYGFV 240

Query: 241 AFKTKKDAEAAISEFQGKTFMGRSLRVARSKQFVKLPSEEKPQSEDASTDGVELANAAAE 300
           AFK KKDAEAAISEFQGKTFMGRSLRVARSKQFVKLPSEEK QSEDASTDGVELANAAAE
Sbjct: 241 AFKAKKDAEAAISEFQGKTFMGRSLRVARSKQFVKLPSEEKSQSEDASTDGVELANAAAE 300

[Close]

BLAST of Chy4G069490 vs. ExPASy TrEMBL
Match: A0A6J1FF97 (28 kDa ribonucleoprotein, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111443545 PE=4 SV=1)

HSP 1 Score: 491.5 bits (1264), Expect = 2.5e-135
Identity = 257/301 (85.38%), Postives = 272/301 (90.37%), Query Frame = 0


Query: 1   MASVRLPCSSSSSIFRSKQHHQIFLAPLSCSQNPSYPINGDFNLSISRSSPSLLSTSISH 60
           MA VRLPCSSSS   RS Q + +F++PLSC QNPSY  NGD  LS+SRSS SL ST + H
Sbjct: 1   MALVRLPCSSSSLFLRSNQQNLVFISPLSCPQNPSYSNNGDIKLSLSRSSSSLFSTPLGH 60

Query: 61  NPLISIRAKRTSTFVFQFASTSQDEAV-SSPSDTEEFSQTRLLAQNVPWDSTPEDIRSLF 120
           NPL SIRAKRT  FVFQ ASTSQD+AV SS SD EEFS+ RLLAQNVPWDSTPEDIRSLF
Sbjct: 61  NPLASIRAKRTRKFVFQLASTSQDDAVASSSSDAEEFSRNRLLAQNVPWDSTPEDIRSLF 120

Query: 121 EKYGTVLDVELSMYNKIRNRGLAFVTMGSPEEALAALNNLESYEFEGRTLRLNYAKLKKE 180
           EKYGTV+DVELSMYNKIRNRGLAFVTMGSPEEALAA+NNLESYEF GRTL+LNYAK+KKE
Sbjct: 121 EKYGTVVDVELSMYNKIRNRGLAFVTMGSPEEALAAVNNLESYEFGGRTLKLNYAKVKKE 180

Query: 181 KPSPPVKPKPVTFNLFVANLPFDARAKDLKEFFDSGSGNVVSAQIIFNENPRRSSGYGFV 240
           KPSPPVKP PVTFNLFVANLPFDARAKDL+EFFDSGSGNVVSAQIIF+ENPRRSSGYGFV
Sbjct: 181 KPSPPVKPNPVTFNLFVANLPFDARAKDLREFFDSGSGNVVSAQIIFHENPRRSSGYGFV 240

Query: 241 AFKTKKDAEAAISEFQGKTFMGRSLRVARSKQFVKLPSEEKPQSEDASTDGVELANAAAE 300
           AFKTKKDAEAAISEFQGK FMGRSLRVARSKQFVKLPSEEK QSED STDGVELA+AAAE
Sbjct: 241 AFKTKKDAEAAISEFQGKNFMGRSLRVARSKQFVKLPSEEKSQSEDTSTDGVELASAAAE 300

[Close]

BLAST of Chy4G069490 vs. ExPASy TrEMBL
Match: A0A6J1IE80 (28 kDa ribonucleoprotein, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111476441 PE=4 SV=1)

HSP 1 Score: 488.4 bits (1256), Expect = 2.1e-134
Identity = 255/301 (84.72%), Postives = 271/301 (90.03%), Query Frame = 0


Query: 1   MASVRLPCSSSSSIFRSKQHHQIFLAPLSCSQNPSYPINGDFNLSISRSSPSLLSTSISH 60
           MA VRLPCSSS    RS Q + +F+APLSC QNPSY  NGD  LS+SRSS SL ST + H
Sbjct: 1   MALVRLPCSSSFLFLRSNQQNLVFIAPLSCLQNPSYSNNGDIKLSLSRSSSSLFSTPLGH 60

Query: 61  NPLISIRAKRTSTFVFQFASTSQDEAV-SSPSDTEEFSQTRLLAQNVPWDSTPEDIRSLF 120
           NPL SIRAKRT  FVFQ ASTSQD+A+ SS SD EEFS+TRLLAQNVPWDSTPEDIRSLF
Sbjct: 61  NPLTSIRAKRTRKFVFQLASTSQDDAIASSSSDAEEFSRTRLLAQNVPWDSTPEDIRSLF 120

Query: 121 EKYGTVLDVELSMYNKIRNRGLAFVTMGSPEEALAALNNLESYEFEGRTLRLNYAKLKKE 180
           EKYGTV+DVELSMYNKIRNRGLAFVTMGSPEEALAA+NNLESYEF GRTL+LNYAK+KKE
Sbjct: 121 EKYGTVVDVELSMYNKIRNRGLAFVTMGSPEEALAAVNNLESYEFGGRTLKLNYAKVKKE 180

Query: 181 KPSPPVKPKPVTFNLFVANLPFDARAKDLKEFFDSGSGNVVSAQIIFNENPRRSSGYGFV 240
           KPSPPVKP PVTFNLFVANLPFDARAKDL+EFFDSGSGNVVSAQIIF+ENPRRSSGYGFV
Sbjct: 181 KPSPPVKPNPVTFNLFVANLPFDARAKDLREFFDSGSGNVVSAQIIFHENPRRSSGYGFV 240

Query: 241 AFKTKKDAEAAISEFQGKTFMGRSLRVARSKQFVKLPSEEKPQSEDASTDGVELANAAAE 300
           AFKTKKDAEAAISEFQGK FMGRSLRVARSKQFVKLPSEE  QS+D STDGVELA+AAAE
Sbjct: 241 AFKTKKDAEAAISEFQGKNFMGRSLRVARSKQFVKLPSEENSQSDDTSTDGVELASAAAE 300

[Close]

BLAST of Chy4G069490 vs. NCBI nr
Match: XP_004136268.1 (28 kDa ribonucleoprotein, chloroplastic [Cucumis sativus] >KGN60238.1 hypothetical protein Csa_002107 [Cucumis sativus])

HSP 1 Score: 566 bits (1460), Expect = 4.65e-203
Identity = 297/300 (99.00%), Postives = 298/300 (99.33%), Query Frame = 0


Query: 1   MASVRLPCSSSSSIFRSKQHHQIFLAPLSCSQNPSYPINGDFNLSISRSSPSLLSTSISH 60
           MASVRLPCSSSSSI RSK HHQIFLAPLSCSQNPSYPINGDFNLSISRSSPSLLSTSISH
Sbjct: 1   MASVRLPCSSSSSILRSKHHHQIFLAPLSCSQNPSYPINGDFNLSISRSSPSLLSTSISH 60

Query: 61  NPLISIRAKRTSTFVFQFASTSQDEAVSSPSDTEEFSQTRLLAQNVPWDSTPEDIRSLFE 120
           +PLISIRAKRTSTFVFQFASTSQDEAVSSPSDTEEFSQTRLLAQNVPWDSTPEDIRSLFE
Sbjct: 61  SPLISIRAKRTSTFVFQFASTSQDEAVSSPSDTEEFSQTRLLAQNVPWDSTPEDIRSLFE 120

Query: 121 KYGTVLDVELSMYNKIRNRGLAFVTMGSPEEALAALNNLESYEFEGRTLRLNYAKLKKEK 180
           KYGTVLDVELSMYNKIRNRGLAFVTMGSPEEALAALNNLESYEFEGRTLRLNYAKLKKEK
Sbjct: 121 KYGTVLDVELSMYNKIRNRGLAFVTMGSPEEALAALNNLESYEFEGRTLRLNYAKLKKEK 180

Query: 181 PSPPVKPKPVTFNLFVANLPFDARAKDLKEFFDSGSGNVVSAQIIFNENPRRSSGYGFVA 240
           PSPPVKPKPVTFNLFVANLPFDARAKDLKEFFDSGSGNVVSAQIIFNENPRRSSGYGFVA
Sbjct: 181 PSPPVKPKPVTFNLFVANLPFDARAKDLKEFFDSGSGNVVSAQIIFNENPRRSSGYGFVA 240

Query: 241 FKTKKDAEAAISEFQGKTFMGRSLRVARSKQFVKLPSEEKPQSEDASTDGVELANAAAEV 300
           FKTKKDAEAAISEFQGKTFMGRSLRVARSKQFVKLPSEEKPQSEDASTDGVELANAAAEV
Sbjct: 241 FKTKKDAEAAISEFQGKTFMGRSLRVARSKQFVKLPSEEKPQSEDASTDGVELANAAAEV 300

[Close]

BLAST of Chy4G069490 vs. NCBI nr
Match: XP_008466190.1 (PREDICTED: 31 kDa ribonucleoprotein, chloroplastic [Cucumis melo] >KAA0038685.1 31 kDa ribonucleoprotein [Cucumis melo var. makuwa] >TYK31295.1 31 kDa ribonucleoprotein [Cucumis melo var. makuwa])

HSP 1 Score: 543 bits (1400), Expect = 6.72e-194
Identity = 287/301 (95.35%), Postives = 292/301 (97.01%), Query Frame = 0


Query: 1   MASVRLPCSSSSSIFRSKQHHQIFLAPLSCSQNPSYPINGDFNLSISRSSPSLLSTSISH 60
           MASVRLPCSSSSSI RSKQHH IFLAPLSCSQNPSYPINGDFNLS+SRSSPSLLSTSI H
Sbjct: 1   MASVRLPCSSSSSILRSKQHHHIFLAPLSCSQNPSYPINGDFNLSVSRSSPSLLSTSICH 60

Query: 61  NPLISIRAKRTSTFVFQFASTSQDEAVSS-PSDTEEFSQTRLLAQNVPWDSTPEDIRSLF 120
           NPLISI AKRTS FVFQFASTSQDEAVSS PSD EEFS+TRLLAQNVPWDSTPEDIRSLF
Sbjct: 61  NPLISIMAKRTSKFVFQFASTSQDEAVSSSPSDIEEFSRTRLLAQNVPWDSTPEDIRSLF 120

Query: 121 EKYGTVLDVELSMYNKIRNRGLAFVTMGSPEEALAALNNLESYEFEGRTLRLNYAKLKKE 180
           EKYGTVLDVELSMYNKIRNRGLAFVTMGSPEEALAALNNLESYEFEGRTLRLNYAKLKKE
Sbjct: 121 EKYGTVLDVELSMYNKIRNRGLAFVTMGSPEEALAALNNLESYEFEGRTLRLNYAKLKKE 180

Query: 181 KPSPPVKPKPVTFNLFVANLPFDARAKDLKEFFDSGSGNVVSAQIIFNENPRRSSGYGFV 240
           KPSPPVKPKPVTFNLFVANLPF+ARAKDL+EFFDSGSGNVVSAQIIF+ENPRRSSGYGFV
Sbjct: 181 KPSPPVKPKPVTFNLFVANLPFEARAKDLREFFDSGSGNVVSAQIIFHENPRRSSGYGFV 240

Query: 241 AFKTKKDAEAAISEFQGKTFMGRSLRVARSKQFVKLPSEEKPQSEDASTDGVELANAAAE 300
           AFK KKDAEAAISEFQGKTFMGRSLRVARSKQFVKLPSEEK QSEDASTDGVELANAAAE
Sbjct: 241 AFKAKKDAEAAISEFQGKTFMGRSLRVARSKQFVKLPSEEKSQSEDASTDGVELANAAAE 300

[Close]

BLAST of Chy4G069490 vs. NCBI nr
Match: XP_038897887.1 (31 kDa ribonucleoprotein, chloroplastic [Benincasa hispida])

HSP 1 Score: 532 bits (1371), Expect = 1.76e-189
Identity = 283/301 (94.02%), Postives = 287/301 (95.35%), Query Frame = 0


Query: 1   MASVRLPCSSSSSIFRSKQHHQIFLAPLSCSQNPSYPINGDFNLSISRSSPSLLSTSISH 60
           MA VRLPCSSSSS  RSKQ H IFLAPLSC QNPSYPINGDFNLSISRSSPSLLSTSI H
Sbjct: 1   MALVRLPCSSSSSFLRSKQQHLIFLAPLSCPQNPSYPINGDFNLSISRSSPSLLSTSIGH 60

Query: 61  NPLISIRAKRTSTFVFQFASTSQDEAV-SSPSDTEEFSQTRLLAQNVPWDSTPEDIRSLF 120
           NPLISIR KRTS FVFQFASTSQDEAV SSPSD+EEFSQTRLLAQNVPW STPEDIRSLF
Sbjct: 61  NPLISIRGKRTSKFVFQFASTSQDEAVASSPSDSEEFSQTRLLAQNVPWSSTPEDIRSLF 120

Query: 121 EKYGTVLDVELSMYNKIRNRGLAFVTMGSPEEALAALNNLESYEFEGRTLRLNYAKLKKE 180
           EKYGTVLDVELSMYNKIRNRGLAFVTMGSPEEALAALNNLESYEFEGRTLRLNYAKLKKE
Sbjct: 121 EKYGTVLDVELSMYNKIRNRGLAFVTMGSPEEALAALNNLESYEFEGRTLRLNYAKLKKE 180

Query: 181 KPSPPVKPKPVTFNLFVANLPFDARAKDLKEFFDSGSGNVVSAQIIFNENPRRSSGYGFV 240
           KPSPPVKPKPVTFNLFVANLPF+ARAKDL+EFFDSGSGNVVSAQIIF+ENPRRSSGYGFV
Sbjct: 181 KPSPPVKPKPVTFNLFVANLPFEARAKDLREFFDSGSGNVVSAQIIFHENPRRSSGYGFV 240

Query: 241 AFKTKKDAEAAISEFQGKTFMGRSLRVARSKQFVKLPSEEKPQSEDASTDGVELANAAAE 300
           AFKTKKDAEAAISEFQGK FMGRSLRVARSKQFVKLPSEEK QSEDASTD VELANAAAE
Sbjct: 241 AFKTKKDAEAAISEFQGKIFMGRSLRVARSKQFVKLPSEEKSQSEDASTDDVELANAAAE 300

[Close]

BLAST of Chy4G069490 vs. NCBI nr
Match: XP_022937168.1 (28 kDa ribonucleoprotein, chloroplastic-like [Cucurbita moschata] >KAG6591682.1 RNA-binding protein CP33, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 486 bits (1251), Expect = 3.36e-171
Identity = 257/301 (85.38%), Postives = 272/301 (90.37%), Query Frame = 0


Query: 1   MASVRLPCSSSSSIFRSKQHHQIFLAPLSCSQNPSYPINGDFNLSISRSSPSLLSTSISH 60
           MA VRLPCSSSS   RS Q + +F++PLSC QNPSY  NGD  LS+SRSS SL ST + H
Sbjct: 1   MALVRLPCSSSSLFLRSNQQNLVFISPLSCPQNPSYSNNGDIKLSLSRSSSSLFSTPLGH 60

Query: 61  NPLISIRAKRTSTFVFQFASTSQDEAV-SSPSDTEEFSQTRLLAQNVPWDSTPEDIRSLF 120
           NPL SIRAKRT  FVFQ ASTSQD+AV SS SD EEFS+ RLLAQNVPWDSTPEDIRSLF
Sbjct: 61  NPLASIRAKRTRKFVFQLASTSQDDAVASSSSDAEEFSRNRLLAQNVPWDSTPEDIRSLF 120

Query: 121 EKYGTVLDVELSMYNKIRNRGLAFVTMGSPEEALAALNNLESYEFEGRTLRLNYAKLKKE 180
           EKYGTV+DVELSMYNKIRNRGLAFVTMGSPEEALAA+NNLESYEF GRTL+LNYAK+KKE
Sbjct: 121 EKYGTVVDVELSMYNKIRNRGLAFVTMGSPEEALAAVNNLESYEFGGRTLKLNYAKVKKE 180

Query: 181 KPSPPVKPKPVTFNLFVANLPFDARAKDLKEFFDSGSGNVVSAQIIFNENPRRSSGYGFV 240
           KPSPPVKP PVTFNLFVANLPFDARAKDL+EFFDSGSGNVVSAQIIF+ENPRRSSGYGFV
Sbjct: 181 KPSPPVKPNPVTFNLFVANLPFDARAKDLREFFDSGSGNVVSAQIIFHENPRRSSGYGFV 240

Query: 241 AFKTKKDAEAAISEFQGKTFMGRSLRVARSKQFVKLPSEEKPQSEDASTDGVELANAAAE 300
           AFKTKKDAEAAISEFQGK FMGRSLRVARSKQFVKLPSEEK QSED STDGVELA+AAAE
Sbjct: 241 AFKTKKDAEAAISEFQGKNFMGRSLRVARSKQFVKLPSEEKSQSEDTSTDGVELASAAAE 300

[Close]

BLAST of Chy4G069490 vs. NCBI nr
Match: XP_022975867.1 (28 kDa ribonucleoprotein, chloroplastic [Cucurbita maxima])

HSP 1 Score: 483 bits (1243), Expect = 5.55e-170
Identity = 255/301 (84.72%), Postives = 271/301 (90.03%), Query Frame = 0


Query: 1   MASVRLPCSSSSSIFRSKQHHQIFLAPLSCSQNPSYPINGDFNLSISRSSPSLLSTSISH 60
           MA VRLPCSSS    RS Q + +F+APLSC QNPSY  NGD  LS+SRSS SL ST + H
Sbjct: 1   MALVRLPCSSSFLFLRSNQQNLVFIAPLSCLQNPSYSNNGDIKLSLSRSSSSLFSTPLGH 60

Query: 61  NPLISIRAKRTSTFVFQFASTSQDEAV-SSPSDTEEFSQTRLLAQNVPWDSTPEDIRSLF 120
           NPL SIRAKRT  FVFQ ASTSQD+A+ SS SD EEFS+TRLLAQNVPWDSTPEDIRSLF
Sbjct: 61  NPLTSIRAKRTRKFVFQLASTSQDDAIASSSSDAEEFSRTRLLAQNVPWDSTPEDIRSLF 120

Query: 121 EKYGTVLDVELSMYNKIRNRGLAFVTMGSPEEALAALNNLESYEFEGRTLRLNYAKLKKE 180
           EKYGTV+DVELSMYNKIRNRGLAFVTMGSPEEALAA+NNLESYEF GRTL+LNYAK+KKE
Sbjct: 121 EKYGTVVDVELSMYNKIRNRGLAFVTMGSPEEALAAVNNLESYEFGGRTLKLNYAKVKKE 180

Query: 181 KPSPPVKPKPVTFNLFVANLPFDARAKDLKEFFDSGSGNVVSAQIIFNENPRRSSGYGFV 240
           KPSPPVKP PVTFNLFVANLPFDARAKDL+EFFDSGSGNVVSAQIIF+ENPRRSSGYGFV
Sbjct: 181 KPSPPVKPNPVTFNLFVANLPFDARAKDLREFFDSGSGNVVSAQIIFHENPRRSSGYGFV 240

Query: 241 AFKTKKDAEAAISEFQGKTFMGRSLRVARSKQFVKLPSEEKPQSEDASTDGVELANAAAE 300
           AFKTKKDAEAAISEFQGK FMGRSLRVARSKQFVKLPSEE  QS+D STDGVELA+AAAE
Sbjct: 241 AFKTKKDAEAAISEFQGKNFMGRSLRVARSKQFVKLPSEENSQSDDTSTDGVELASAAAE 300

[Close]

BLAST of Chy4G069490 vs. TAIR 10
Match: AT4G09040.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 263.8 bits (673), Expect = 1.7e-70
Identity = 149/259 (57.53%), Postives = 190/259 (73.36%), Query Frame = 0


Query: 43  NLSISRSSPSLLSTSISHNPLISIRAKRTSTFVFQFASTSQDEAVSSPSDT--------E 102
           N S+S S+PSL           SI AK +      F++T+Q+  + S S +        E
Sbjct: 31  NHSLSLSTPSLCRLHRHATFPDSIPAK-SRNLTSYFSTTTQEPVLESSSSSSSAPEVVEE 90

Query: 103 EFSQTRLLAQNVPWDSTPEDIRSLFEKYGTVLDVELSMYNKIRNRGLAFVTMGSPEEALA 162
           E S+TRL+AQNVPW STPEDIRSLFEKYG+V+D+E+SM+ K RNRGL F+ M SPEEA  
Sbjct: 91  EISKTRLIAQNVPWTSTPEDIRSLFEKYGSVIDIEMSMHKKERNRGLVFIEMASPEEAAT 150

Query: 163 ALNNLESYEFEGRTLRLNYAKLKKEKP-SPPVKPKPV-TFNLFVANLPFDARAKDLKEFF 222
           AL +LES E+EGR L+++YAK KK+K  +P   P PV TFNLFVANL F+ARAK LKEFF
Sbjct: 151 ALKSLESCEYEGRRLKVDYAKTKKKKTYAPRETPSPVPTFNLFVANLAFEARAKHLKEFF 210

Query: 223 DSGSGNVVSAQIIFNENPRRSSGYGFVAFKTKKDAEAAISEFQGKTFMGRSLRVARSKQF 282
           D+ +GNVVS ++IF+ENPRRSSGYGFV+FKTKK AEAA+ EFQGK F+GR +R+A+SKQF
Sbjct: 211 DADTGNVVSTEVIFHENPRRSSGYGFVSFKTKKQAEAALIEFQGKDFLGRPIRLAKSKQF 270

Query: 283 VKLPSEE--KPQSEDASTD 290
           VKL ++E  +P  E+A  +
Sbjct: 271 VKLQAKEGLQPPEEEAEEE 288

[Close]

BLAST of Chy4G069490 vs. TAIR 10
Match: AT4G09040.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 257.3 bits (656), Expect = 1.5e-68
Identity = 131/197 (66.50%), Postives = 163/197 (82.74%), Query Frame = 0


Query: 97  SQTRLLAQNVPWDSTPEDIRSLFEKYGTVLDVELSMYNKIRNRGLAFVTMGSPEEALAAL 156
           S+TRL+AQNVPW STPEDIRSLFEKYG+V+D+E+SM+ K RNRGL F+ M SPEEA  AL
Sbjct: 32  SKTRLIAQNVPWTSTPEDIRSLFEKYGSVIDIEMSMHKKERNRGLVFIEMASPEEAATAL 91

Query: 157 NNLESYEFEGRTLRLNYAKLKKEKP-SPPVKPKPV-TFNLFVANLPFDARAKDLKEFFDS 216
            +LES E+EGR L+++YAK KK+K  +P   P PV TFNLFVANL F+ARAK LKEFFD+
Sbjct: 92  KSLESCEYEGRRLKVDYAKTKKKKTYAPRETPSPVPTFNLFVANLAFEARAKHLKEFFDA 151

Query: 217 GSGNVVSAQIIFNENPRRSSGYGFVAFKTKKDAEAAISEFQGKTFMGRSLRVARSKQFVK 276
            +GNVVS ++IF+ENPRRSSGYGFV+FKTKK AEAA+ EFQGK F+GR +R+A+SKQFVK
Sbjct: 152 DTGNVVSTEVIFHENPRRSSGYGFVSFKTKKQAEAALIEFQGKDFLGRPIRLAKSKQFVK 211

Query: 277 LPSEE--KPQSEDASTD 290
           L ++E  +P  E+A  +
Sbjct: 212 LQAKEGLQPPEEEAEEE 228

[Close]

BLAST of Chy4G069490 vs. TAIR 10
Match: AT2G35410.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 131.3 bits (329), Expect = 1.3e-30
Identity = 96/276 (34.78%), Postives = 146/276 (52.90%), Query Frame = 0


Query: 47  SRSSPSLLSTSIS------HNPLISIR-----AKRTSTFVFQFA--STSQDEAVSSPSDT 106
           S+ S SL  T++S       +P+ S+R     ++R  + +   A   TS DE  S    T
Sbjct: 26  SKRSSSLKLTALSLRIPSNLSPVFSLRSGSDNSRRLVSVLCSVAEKETSADEETSQEEKT 85

Query: 107 EEFSQT----RLLAQNVPWDSTPEDIRSLFEKYGTVLDVELSMYNKIRNRGLAFVTMGSP 166
           EE   +    +L   N+PW  +  DI  LF + GTV +VE+      +NRG AFVTM S 
Sbjct: 86  EETQNSNLKRKLFVFNLPWSMSVNDISELFGQCGTVNNVEIIRQKDGKNRGFAFVTMASG 145

Query: 167 EEALAALNNLESYEFEGRTLRLNYA-KLKKEKPS-----PPVKPKPVTFNLFVANLPFDA 226
           EEA AA++  ++++  GR + +++A + KK  P      P   P      L+V+NL + A
Sbjct: 146 EEAQAAIDKFDTFQVSGRIISVSFARRFKKPTPKSPNDLPSPAPGDTRHKLYVSNLAWKA 205

Query: 227 RAKDLKEFFDSGSGNVVSAQIIFNENPRRSSGYGFVAFKTKKDAEAAISEFQGKTFMGRS 286
           R+  L+E F +   N VSA+++F +   RSSGYGFV+F T+++AE AI++  GK  MGR 
Sbjct: 206 RSTHLRELFTAADFNPVSARVVFADPEGRSSGYGFVSFATREEAENAITKLNGKEIMGRP 265

Query: 287 LRVARSKQFVKLPSEEKPQSEDASTDGVELANAAAE 300
           +        +K       +SED   D VE  NA+ +
Sbjct: 266 IT-------LKFSLRSASESEDG--DSVEANNASED 292

[Close]

BLAST of Chy4G069490 vs. TAIR 10
Match: AT3G52380.1 (chloroplast RNA-binding protein 33 )

HSP 1 Score: 102.4 bits (254), Expect = 6.4e-22
Identity = 84/287 (29.27%), Postives = 150/287 (52.26%), Query Frame = 0


Query: 42  FNLSISRSSPSLLSTSI-SHNPLISIRAKRTSTFVFQFASTSQDEAVSSPSD-----TEE 101
           F L  +  +P +L ++I  H    +   + +S      AS  ++E V    D      EE
Sbjct: 45  FKLVANCPNPLILHSNIRRHRFFCAAETEASSADDEIQASVEEEEEVEEEGDEGEEEVEE 104

Query: 102 FSQT--------RLLAQNVPWDSTPEDIRSLFEKYGTVLDVELSMYNKI--RNRGLAFVT 161
             QT        RL   N+P+  T  ++  +F + GTV+DV++ +Y+K+  R+RG  FVT
Sbjct: 105 EKQTTQASGEEGRLYVGNLPYTITSSELSQIFGEAGTVVDVQI-VYDKVTDRSRGFGFVT 164

Query: 162 MGSPEEALAALNNLESYEFEGRTLRLNYAKLKKEKPSPPVKPKPVTFN---------LFV 221
           MGS EEA  A+    S +  GRT+++N+ ++ +   +  ++ K    N         ++ 
Sbjct: 165 MGSIEEAKEAMQMFNSSQIGGRTVKVNFPEVPRGGENEVMRTKIRDNNRSYVDSPHKVYA 224

Query: 222 ANLPFDARAKDLKEFFDSGSGNVVSAQIIFNENPRRSSGYGFVAFKTKKDAEAAISEFQG 281
            NL ++  ++ LK+ F    G V+ A++I+  N  RS G+GF++F++ ++ ++A++   G
Sbjct: 225 GNLGWNLTSQGLKDAFGDQPG-VLGAKVIYERNTGRSRGFGFISFESAENVQSALATMNG 284

Query: 282 KTFMGRSLRV----ARSKQFVKLPSEEKPQSEDASTDGVE-LANAAA 299
               GR+LR+     R K  V  PS E+ ++E+AS +  E L+N +A
Sbjct: 285 VEVEGRALRLNLASEREKPTVSPPSVEEGETEEASLESNEVLSNVSA 329

[Close]

BLAST of Chy4G069490 vs. TAIR 10
Match: AT5G50250.1 (chloroplast RNA-binding protein 31B )

HSP 1 Score: 98.6 bits (244), Expect = 9.2e-21
Identity = 60/189 (31.75%), Postives = 98/189 (51.85%), Query Frame = 0


Query: 80  STSQDEAVSSPSDTEEFSQTRLLAQNVPWDSTPEDIRSLFEKYGTVLDVELSMYNK--IR 139
           S   ++ V  P   EE    +L   N+P+D   + +  LFE+ GTV ++   +YN+   +
Sbjct: 97  SFESEDGVGFPEPPEE---AKLFVGNLPYDVDSQALAMLFEQAGTV-EISEVIYNRDTDQ 156

Query: 140 NRGLAFVTMGSPEEALAALNNLESYEFEGRTLRLNYAKLKKEKPSPPVKPKPVTFNLFVA 199
           +RG  FVTM + EEA  A+    S+E  GR L +N A  +  +P    +     F ++V 
Sbjct: 157 SRGFGFVTMSTVEEAEKAVEKFNSFEVNGRRLTVNRAAPRGSRPERQPRVYDAAFRIYVG 216

Query: 200 NLPFDARAKDLKEFFDSGSGNVVSAQIIFNENPRRSSGYGFVAFKTKKDAEAAISEFQGK 259
           NLP+D  +  L+  F S  G VV A+++ +    RS G+GFV    + +   AI+   G+
Sbjct: 217 NLPWDVDSGRLERLF-SEHGKVVDARVVSDRETGRSRGFGFVQMSNENEVNVAIAALDGQ 276

Query: 260 TFMGRSLRV 267
              GR+++V
Sbjct: 277 NLEGRAIKV 280

The following BLAST results are available for this feature:

BLAST of Chy4G069490 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P19682	2.4e-21	30.13	28 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=1 SV=...	[more]
Q39061	9.0e-21	29.27	RNA-binding protein CP33, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CP33 ...	[more]
P19683	1.5e-20	30.65	31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=1 SV=...	[more]
Q9FGS0	1.3e-19	31.75	RNA-binding protein CP31B, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CP31...	[more]
P28644	1.9e-18	32.39	28 kDa ribonucleoprotein, chloroplastic OS=Spinacia oleracea OX=3562 PE=1 SV=1	[more]

BLAST of Chy4G069490 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LEN0	1.5e-159	99.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G889940 PE=4 SV=1	[more]
A0A5A7TBD1	1.3e-152	95.35	31 kDa ribonucleoprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]
A0A1S3CS17	1.3e-152	95.35	31 kDa ribonucleoprotein, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103503681 ...	[more]
A0A6J1FF97	2.5e-135	85.38	28 kDa ribonucleoprotein, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LO...	[more]
A0A6J1IE80	2.1e-134	84.72	28 kDa ribonucleoprotein, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111476...	[more]

BLAST of Chy4G069490 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004136268.1	4.65e-203	99.00	28 kDa ribonucleoprotein, chloroplastic [Cucumis sativus] >KGN60238.1 hypothetic...	[more]
XP_008466190.1	6.72e-194	95.35	PREDICTED: 31 kDa ribonucleoprotein, chloroplastic [Cucumis melo] >KAA0038685.1 ...	[more]
XP_038897887.1	1.76e-189	94.02	31 kDa ribonucleoprotein, chloroplastic [Benincasa hispida]	[more]
XP_022937168.1	3.36e-171	85.38	28 kDa ribonucleoprotein, chloroplastic-like [Cucurbita moschata] >KAG6591682.1 ...	[more]
XP_022975867.1	5.55e-170	84.72	28 kDa ribonucleoprotein, chloroplastic [Cucurbita maxima]	[more]

BLAST of Chy4G069490 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G09040.1	1.7e-70	57.53	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT4G09040.2	1.5e-68	66.50	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT2G35410.1	1.3e-30	34.78	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT3G52380.1	6.4e-22	29.27	chloroplast RNA-binding protein 33	[more]
AT5G50250.1	9.2e-21	31.75	chloroplast RNA-binding protein 31B	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 100..172 e-value: 8.0E-17 score: 71.9 coord: 193..267 e-value: 1.4E-22 score: 91.0
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 104..170 e-value: 4.9E-14 score: 51.9 coord: 194..265 e-value: 1.7E-18 score: 66.2
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 192..271 score: 18.393282
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 99..176 score: 16.84124
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 75..179 e-value: 1.6E-21 score: 78.6
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 180..292 e-value: 1.1E-23 score: 85.8
None	No IPR available	PANTHER	PTHR23003:SF35	OS08G0483200 PROTEIN	coord: 1..290
None	No IPR available	PANTHER	PTHR23003	RNA RECOGNITION MOTIF RRM DOMAIN CONTAINING PROTEIN	coord: 1..290
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 90..182
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 181..274

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy4G069490.1	Chy4G069490.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0005634	nucleus
cellular_component	GO:1990904	ribonucleoprotein complex
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0003676	nucleic acid binding