Chy4G069010 (gene) Cucumber (hystrix) v1

Overview


Name	Chy4G069010
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	hydroxyproline-rich glycoprotein family protein
Location	chrH04: 1627585 .. 1628091 (-)
RNA-Seq Expression	Chy4G069010
Synteny	Chy4G069010

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGTATGATAATCGCGAAGCACAGGATCCTGCCTCTCTAAGCTTTCCAGTTGGTTTAGTTCTTTTGTTAACGTTTTTGTTTTGTATGTGTTGTTTCTTTTGTTGTTGTCTTCACTGGGAGAAGCTCCGATCCTTTCTTGGCTGCCCCGATCATCTCCACCACCACCATCCTCCCATTCCCCCGCCCCAATCCCCCGCCCCCGATAAAGTTCCGCCTATTCACTCGGTGCGTCCTTTTCTTCATTTCTTCATTATTTTAAATACCATAATCCAATTGTTTTTACCTGGTGTGTTACTCTTACTATATATACGTTTAACTAATCTTTCCTTCTTCGTCTATTATTCTCTTAATAACGTGAAGATATGGAAGGAGAATCGGCCGCAAAGCGTATCGGTGTTGATGCCAGGCGACGAGGTTCCGAGGTTTATAGCAATGGCGTGTCCGGCGTTGGTGGAAATTGTAGTACAAAAACCTTCGCAAAGTATTTCTTCAGATAATCCTTAA

mRNA sequence

ATGGAGTATGATAATCGCGAAGCACAGGATCCTGCCTCTCTAAGCTTTCCAGTTGGTTTAGTTCTTTTGTTAACGTTTTTGTTTTGTATGTGTTGTTTCTTTTGTTGTTGTCTTCACTGGGAGAAGCTCCGATCCTTTCTTGGCTGCCCCGATCATCTCCACCACCACCATCCTCCCATTCCCCCGCCCCAATCCCCCGCCCCCGATAAAGTTCCGCCTATTCACTCGATATGGAAGGAGAATCGGCCGCAAAGCGTATCGGTGTTGATGCCAGGCGACGAGGTTCCGAGGTTTATAGCAATGGCGTGTCCGGCGTTGGTGGAAATTGTAGTACAAAAACCTTCGCAAAGTATTTCTTCAGATAATCCTTAA

Coding sequence (CDS)

ATGGAGTATGATAATCGCGAAGCACAGGATCCTGCCTCTCTAAGCTTTCCAGTTGGTTTAGTTCTTTTGTTAACGTTTTTGTTTTGTATGTGTTGTTTCTTTTGTTGTTGTCTTCACTGGGAGAAGCTCCGATCCTTTCTTGGCTGCCCCGATCATCTCCACCACCACCATCCTCCCATTCCCCCGCCCCAATCCCCCGCCCCCGATAAAGTTCCGCCTATTCACTCGATATGGAAGGAGAATCGGCCGCAAAGCGTATCGGTGTTGATGCCAGGCGACGAGGTTCCGAGGTTTATAGCAATGGCGTGTCCGGCGTTGGTGGAAATTGTAGTACAAAAACCTTCGCAAAGTATTTCTTCAGATAATCCTTAA

Protein sequence

MEYDNREAQDPASLSFPVGLVLLLTFLFCMCCFFCCCLHWEKLRSFLGCPDHLHHHHPPIPPPQSPAPDKVPPIHSIWKENRPQSVSVLMPGDEVPRFIAMACPALVEIVVQKPSQSISSDNP*

Homology

[Close]

BLAST of Chy4G069010 vs. ExPASy Swiss-Prot
Match: Q9LSK9 (Uncharacterized protein At5g65660 OS=Arabidopsis thaliana OX=3702 GN=At5g65660 PE=2 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 1.8e-07
Identity = 43/111 (38.74%), Postives = 56/111 (50.45%), Query Frame = 0


Query: 13  SLSFPVGLVLLLTFLFCMCCFFCCCLHWEKLRSFLGCPDHLHHHHPPIPPPQSPAPDKVP 72
           SL FP+G  LLL  +F +   F CC HW+K RS       L +  P      +P   K P
Sbjct: 18  SLGFPLGTALLLIIIFSLSGIFSCCYHWDKHRSL---RRSLANGRPSADIESNPYKPK-P 77

Query: 73  PIHSIWKENRPQSVSVLMPGDEVPRFIAMACPAL------VEIVVQKPSQS 118
           P   + K+ +  SV VLMPGD  P+FIA+ CP        + + VQ P QS
Sbjct: 78  PFPEM-KKPQNLSVPVLMPGDNTPKFIALPCPCAPPRPEKLTVDVQTPPQS 123

[Close]

BLAST of Chy4G069010 vs. ExPASy TrEMBL
Match: A0A5D3E545 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G005320 PE=4 SV=1)

HSP 1 Score: 233.4 bits (594), Expect = 5.1e-58
Identity = 114/133 (85.71%), Postives = 117/133 (87.97%), Query Frame = 0


Query: 1   MEYDNREAQDPASLSFPVGLVLLLTFLFCMCCFFCCCLHWEKLRSFLGCPDHLHHHHPPI 60
           MEYDNREAQDPASLSFPVGLVLLLTFLFCMCCFFCCCLHWEKLRSFLGCPDHLHHHHPPI
Sbjct: 1   MEYDNREAQDPASLSFPVGLVLLLTFLFCMCCFFCCCLHWEKLRSFLGCPDHLHHHHPPI 60

Query: 61  PPPQSPA----PDKVPPIHSIWKENRPQSVSVLMPGDEVPRFIAMACP-------ALVEI 120
           PPP SPA    PDK  PIH+IWKENRPQSVSVLMPGDEVPRFIA+ACP       ALVEI
Sbjct: 61  PPPHSPAALSPPDKFSPIHTIWKENRPQSVSVLMPGDEVPRFIALACPPCATAAAALVEI 120

Query: 121 VVQKPSQSISSDN 123
           VVQKPSQSIS  +
Sbjct: 121 VVQKPSQSISDSS 133

[Close]

BLAST of Chy4G069010 vs. ExPASy TrEMBL
Match: A0A1S3CQS4 (uncharacterized protein At5g65660-like OS=Cucumis melo OX=3656 GN=LOC103503633 PE=4 SV=1)

HSP 1 Score: 233.4 bits (594), Expect = 5.1e-58
Identity = 114/133 (85.71%), Postives = 117/133 (87.97%), Query Frame = 0


Query: 1   MEYDNREAQDPASLSFPVGLVLLLTFLFCMCCFFCCCLHWEKLRSFLGCPDHLHHHHPPI 60
           MEYDNREAQDPASLSFPVGLVLLLTFLFCMCCFFCCCLHWEKLRSFLGCPDHLHHHHPPI
Sbjct: 1   MEYDNREAQDPASLSFPVGLVLLLTFLFCMCCFFCCCLHWEKLRSFLGCPDHLHHHHPPI 60

Query: 61  PPPQSPA----PDKVPPIHSIWKENRPQSVSVLMPGDEVPRFIAMACP-------ALVEI 120
           PPP SPA    PDK  PIH+IWKENRPQSVSVLMPGDEVPRFIA+ACP       ALVEI
Sbjct: 61  PPPHSPAALSPPDKFSPIHTIWKENRPQSVSVLMPGDEVPRFIALACPPCATAAAALVEI 120

Query: 121 VVQKPSQSISSDN 123
           VVQKPSQSIS  +
Sbjct: 121 VVQKPSQSISDSS 133

[Close]

BLAST of Chy4G069010 vs. ExPASy TrEMBL
Match: A0A6J1F906 (uncharacterized protein At5g65660-like OS=Cucurbita moschata OX=3662 GN=LOC111443410 PE=4 SV=1)

HSP 1 Score: 199.9 bits (507), Expect = 6.2e-48
Identity = 100/130 (76.92%), Postives = 106/130 (81.54%), Query Frame = 0


Query: 1   MEYDNREAQDPASLSFPVGLVLLLTFLFCMCCFFCCCLHWEKLRSFLGCPDHLHHHHPPI 60
           MEYD+REAQD ASLSFPVGLVLLLTFLFCMCCFF CCLHWEKLRS LGCPDH  H HP I
Sbjct: 1   MEYDDREAQDSASLSFPVGLVLLLTFLFCMCCFFSCCLHWEKLRSILGCPDHADHRHPSI 60

Query: 61  PP--PQSPAPDKVPPIHSIWKENRPQSVSVLMPGDEVPRFIAMACP-----ALVEIVVQK 120
           PP  P    PDK  PIH+IWKENRP+S++VLMPGDEVPRFIAMACP      LVEIV+QK
Sbjct: 61  PPETPAFSPPDKFSPIHTIWKENRPESLTVLMPGDEVPRFIAMACPPCGAAPLVEIVIQK 120

Query: 121 PSQSISSDNP 124
           PSQSIS   P
Sbjct: 121 PSQSISGALP 130

[Close]

BLAST of Chy4G069010 vs. ExPASy TrEMBL
Match: A0A6J1IEI5 (uncharacterized protein At5g65660-like OS=Cucurbita maxima OX=3661 GN=LOC111476516 PE=4 SV=1)

HSP 1 Score: 198.4 bits (503), Expect = 1.8e-47
Identity = 100/130 (76.92%), Postives = 106/130 (81.54%), Query Frame = 0


Query: 1   MEYDNREAQDPASLSFPVGLVLLLTFLFCMCCFFCCCLHWEKLRSFLGCPDHLHHHHPPI 60
           MEYD+REAQD ASLSFPVGLVLLLTFLFCMCCFF CCLHWEKLRS LGCPDH  H HP I
Sbjct: 1   MEYDDREAQDSASLSFPVGLVLLLTFLFCMCCFFSCCLHWEKLRSILGCPDHSDHLHPSI 60

Query: 61  PP--PQSPAPDKVPPIHSIWKENRPQSVSVLMPGDEVPRFIAMACP-----ALVEIVVQK 120
           PP  P    PDK  PIH+IWKENRP+S++VLMPGDEVPRFIAMACP      LVEIV+QK
Sbjct: 61  PPETPAFSPPDKFSPIHTIWKENRPESLTVLMPGDEVPRFIAMACPPCGAAPLVEIVIQK 120

Query: 121 PSQSISSDNP 124
           PSQSIS   P
Sbjct: 121 PSQSISGALP 130

[Close]

BLAST of Chy4G069010 vs. ExPASy TrEMBL
Match: A0A0A0LE40 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G893400 PE=4 SV=1)

HSP 1 Score: 193.4 bits (490), Expect = 5.8e-46
Identity = 91/94 (96.81%), Postives = 91/94 (96.81%), Query Frame = 0


Query: 30  MCCFFCCCLHWEKLRSFLGCPDHLHHHHPPIPPPQSPAPDKVPPIHSIWKENRPQSVSVL 89
           MCCFFCCCLHWEKLRSFLGCPDHLHHHHPPIP PQSPAPDKV PIHSIWKENRPQSVSVL
Sbjct: 1   MCCFFCCCLHWEKLRSFLGCPDHLHHHHPPIPQPQSPAPDKVSPIHSIWKENRPQSVSVL 60

Query: 90  MPGDEVPRFIAMACPALVEIVVQKPSQSISSDNP 124
           MPGDEVPRFIAMACPALVEIVVQKPSQSI SDNP
Sbjct: 61  MPGDEVPRFIAMACPALVEIVVQKPSQSI-SDNP 93

[Close]

BLAST of Chy4G069010 vs. NCBI nr
Match: XP_008466113.1 (PREDICTED: uncharacterized protein At5g65660-like [Cucumis melo] >KAA0038642.1 uncharacterized protein E6C27_scaffold92G001760 [Cucumis melo var. makuwa] >TYK31243.1 uncharacterized protein E5676_scaffold455G005320 [Cucumis melo var. makuwa])

HSP 1 Score: 233 bits (593), Expect = 1.26e-76
Identity = 114/133 (85.71%), Postives = 117/133 (87.97%), Query Frame = 0


Query: 1   MEYDNREAQDPASLSFPVGLVLLLTFLFCMCCFFCCCLHWEKLRSFLGCPDHLHHHHPPI 60
           MEYDNREAQDPASLSFPVGLVLLLTFLFCMCCFFCCCLHWEKLRSFLGCPDHLHHHHPPI
Sbjct: 1   MEYDNREAQDPASLSFPVGLVLLLTFLFCMCCFFCCCLHWEKLRSFLGCPDHLHHHHPPI 60

Query: 61  PPPQSPA----PDKVPPIHSIWKENRPQSVSVLMPGDEVPRFIAMACP-------ALVEI 120
           PPP SPA    PDK  PIH+IWKENRPQSVSVLMPGDEVPRFIA+ACP       ALVEI
Sbjct: 61  PPPHSPAALSPPDKFSPIHTIWKENRPQSVSVLMPGDEVPRFIALACPPCATAAAALVEI 120

Query: 121 VVQKPSQSISSDN 122
           VVQKPSQSIS  +
Sbjct: 121 VVQKPSQSISDSS 133

[Close]

BLAST of Chy4G069010 vs. NCBI nr
Match: XP_038899315.1 (uncharacterized protein At5g65660-like [Benincasa hispida])

HSP 1 Score: 213 bits (543), Expect = 4.82e-69
Identity = 108/131 (82.44%), Postives = 114/131 (87.02%), Query Frame = 0


Query: 1   MEYDNREAQDPASLSFPVGLVLLLTFLFCMCCFFCCCLHWEKLRSFLGCPDHLHHHHPPI 60
           MEYDNREAQDPASLSFPVGLVLLLTFLFCMCCFF CCLHWEKLRSFLGCPDHLHHHHPPI
Sbjct: 1   MEYDNREAQDPASLSFPVGLVLLLTFLFCMCCFFSCCLHWEKLRSFLGCPDHLHHHHPPI 60

Query: 61  PPPQSPA---PDKVPPIHS-IWKENRPQSVSVLMPGDEVPRFIAMACP-----ALVEIVV 120
           PP Q+ A   PDK+ PIH+ IW+ENRPQS+SVLMPGDEVPRFIAMACP     ALVEIVV
Sbjct: 61  PP-QTAAFSPPDKISPIHTKIWRENRPQSLSVLMPGDEVPRFIAMACPPCAAAALVEIVV 120

Query: 121 QKPSQSISSDN 122
           QKPSQS    +
Sbjct: 121 QKPSQSFPDSS 130

[Close]

BLAST of Chy4G069010 vs. NCBI nr
Match: KAG6591711.1 (hypothetical protein SDJN03_14057, partial [Cucurbita argyrosperma subsp. sororia] >KAG7024594.1 hypothetical protein SDJN02_13412 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 200 bits (508), Expect = 1.08e-63
Identity = 101/131 (77.10%), Postives = 109/131 (83.21%), Query Frame = 0


Query: 1   MEYDNREAQDPASLSFPVGLVLLLTFLFCMCCFFCCCLHWEKLRSFLGCPDHLHHHHPPI 60
           MEYD+REAQD ASLSFPVGLVLLLTFLFCMCCFF CCLHWEKLRS LGCPDH  H HP I
Sbjct: 1   MEYDDREAQDSASLSFPVGLVLLLTFLFCMCCFFSCCLHWEKLRSILGCPDHADHRHPSI 60

Query: 61  PPPQSPA---PDKVPPIHSIWKENRPQSVSVLMPGDEVPRFIAMACPA-----LVEIVVQ 120
           PP ++PA   PDK  PIH+IWKENRP+S++VLMPGDEVPRFIAMACP      LVEIV+Q
Sbjct: 61  PP-ETPAFSPPDKFSPIHTIWKENRPESLTVLMPGDEVPRFIAMACPPCGAAPLVEIVIQ 120

Query: 121 KPSQSISSDNP 123
           KPSQSIS   P
Sbjct: 121 KPSQSISEALP 130

[Close]

BLAST of Chy4G069010 vs. NCBI nr
Match: XP_022936981.1 (uncharacterized protein At5g65660-like [Cucurbita moschata])

HSP 1 Score: 200 bits (508), Expect = 1.08e-63
Identity = 101/131 (77.10%), Postives = 109/131 (83.21%), Query Frame = 0


Query: 1   MEYDNREAQDPASLSFPVGLVLLLTFLFCMCCFFCCCLHWEKLRSFLGCPDHLHHHHPPI 60
           MEYD+REAQD ASLSFPVGLVLLLTFLFCMCCFF CCLHWEKLRS LGCPDH  H HP I
Sbjct: 1   MEYDDREAQDSASLSFPVGLVLLLTFLFCMCCFFSCCLHWEKLRSILGCPDHADHRHPSI 60

Query: 61  PPPQSPA---PDKVPPIHSIWKENRPQSVSVLMPGDEVPRFIAMACPA-----LVEIVVQ 120
           PP ++PA   PDK  PIH+IWKENRP+S++VLMPGDEVPRFIAMACP      LVEIV+Q
Sbjct: 61  PP-ETPAFSPPDKFSPIHTIWKENRPESLTVLMPGDEVPRFIAMACPPCGAAPLVEIVIQ 120

Query: 121 KPSQSISSDNP 123
           KPSQSIS   P
Sbjct: 121 KPSQSISGALP 130

[Close]

BLAST of Chy4G069010 vs. NCBI nr
Match: XP_022975977.1 (uncharacterized protein At5g65660-like [Cucurbita maxima])

HSP 1 Score: 198 bits (504), Expect = 4.38e-63
Identity = 101/131 (77.10%), Postives = 109/131 (83.21%), Query Frame = 0


Query: 1   MEYDNREAQDPASLSFPVGLVLLLTFLFCMCCFFCCCLHWEKLRSFLGCPDHLHHHHPPI 60
           MEYD+REAQD ASLSFPVGLVLLLTFLFCMCCFF CCLHWEKLRS LGCPDH  H HP I
Sbjct: 1   MEYDDREAQDSASLSFPVGLVLLLTFLFCMCCFFSCCLHWEKLRSILGCPDHSDHLHPSI 60

Query: 61  PPPQSPA---PDKVPPIHSIWKENRPQSVSVLMPGDEVPRFIAMACPA-----LVEIVVQ 120
           PP ++PA   PDK  PIH+IWKENRP+S++VLMPGDEVPRFIAMACP      LVEIV+Q
Sbjct: 61  PP-ETPAFSPPDKFSPIHTIWKENRPESLTVLMPGDEVPRFIAMACPPCGAAPLVEIVIQ 120

Query: 121 KPSQSISSDNP 123
           KPSQSIS   P
Sbjct: 121 KPSQSISGALP 130

[Close]

BLAST of Chy4G069010 vs. TAIR 10
Match: AT5G65660.1 (hydroxyproline-rich glycoprotein family protein )

HSP 1 Score: 57.0 bits (136), Expect = 1.3e-08
Identity = 43/111 (38.74%), Postives = 56/111 (50.45%), Query Frame = 0


Query: 13  SLSFPVGLVLLLTFLFCMCCFFCCCLHWEKLRSFLGCPDHLHHHHPPIPPPQSPAPDKVP 72
           SL FP+G  LLL  +F +   F CC HW+K RS       L +  P      +P   K P
Sbjct: 18  SLGFPLGTALLLIIIFSLSGIFSCCYHWDKHRSL---RRSLANGRPSADIESNPYKPK-P 77

Query: 73  PIHSIWKENRPQSVSVLMPGDEVPRFIAMACPAL------VEIVVQKPSQS 118
           P   + K+ +  SV VLMPGD  P+FIA+ CP        + + VQ P QS
Sbjct: 78  PFPEM-KKPQNLSVPVLMPGDNTPKFIALPCPCAPPRPEKLTVDVQTPPQS 123

[Close]

BLAST of Chy4G069010 vs. TAIR 10
Match: AT4G28170.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G11120.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 41.2 bits (95), Expect = 7.1e-04
Identity = 25/60 (41.67%), Postives = 30/60 (50.00%), Query Frame = 0


Query: 61  PPPQSPAPDKVPPIHSIWKENRPQSVSVLMPGDEVPRFIAMACPALVEIVVQKPSQSISS 120
           P P  P   K PP  S   +   + +SVLMPG++VP FIA  CP         PS S SS
Sbjct: 92  PTPSPPLDQKFPPFASPKMDVCKREISVLMPGEDVPTFIAQPCP---------PSSSSSS 142

The following BLAST results are available for this feature:

BLAST of Chy4G069010 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LSK9	1.8e-07	38.74	Uncharacterized protein At5g65660 OS=Arabidopsis thaliana OX=3702 GN=At5g65660 P...	[more]

BLAST of Chy4G069010 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3E545	5.1e-58	85.71	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3CQS4	5.1e-58	85.71	uncharacterized protein At5g65660-like OS=Cucumis melo OX=3656 GN=LOC103503633 P...	[more]
A0A6J1F906	6.2e-48	76.92	uncharacterized protein At5g65660-like OS=Cucurbita moschata OX=3662 GN=LOC11144...	[more]
A0A6J1IEI5	1.8e-47	76.92	uncharacterized protein At5g65660-like OS=Cucurbita maxima OX=3661 GN=LOC1114765...	[more]
A0A0A0LE40	5.8e-46	96.81	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G893400 PE=4 SV=1	[more]

BLAST of Chy4G069010 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008466113.1	1.26e-76	85.71	PREDICTED: uncharacterized protein At5g65660-like [Cucumis melo] >KAA0038642.1 u...	[more]
XP_038899315.1	4.82e-69	82.44	uncharacterized protein At5g65660-like [Benincasa hispida]	[more]
KAG6591711.1	1.08e-63	77.10	hypothetical protein SDJN03_14057, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022936981.1	1.08e-63	77.10	uncharacterized protein At5g65660-like [Cucurbita moschata]	[more]
XP_022975977.1	4.38e-63	77.10	uncharacterized protein At5g65660-like [Cucurbita maxima]	[more]

BLAST of Chy4G069010 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G65660.1	1.3e-08	38.74	hydroxyproline-rich glycoprotein family protein	[more]
AT4G28170.1	7.1e-04	41.67	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34291:SF7	PROTEIN, PUTATIVE-RELATED	coord: 5..118
IPR037699	Uncharacterized protein At5g65660-like	PANTHER	PTHR34291	HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY PROTEIN	coord: 5..118

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy4G069010.1	Chy4G069010.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane