Chy4G068870 (gene) Cucumber (hystrix) v1

Overview
NameChy4G068870
Typegene
OrganismCucumis hystrix (Cucumber (hystrix) v1)
DescriptionGlutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial
LocationchrH04: 1481375 .. 1486366 (+)
RNA-Seq ExpressionChy4G068870
SyntenyChy4G068870
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTATGCACTTCTAGGCATTGGAAGAGATGGTTGTTCAAACCACAGTGGGGAAACAGATGCAGAGGCATCTCCAGCCACCCCAGTTACATCTACTTCGTTGCCAGAGAATCATCAGACCACGACCAGTTCGATTCCGCTTCTTTCTAGTTCCGACACTCGCAGAAGTTCGTTTCATGGCCTTCAATTTCAACAATGCAGCAACGCCACTGCTGAGAGAAATCCTAATGGAGGAGATTCGGACAAAGTATGACAACCAAGGTGTGTTTGCTCTTAGTTGTAGTGTAGAATCTATTGACAAAGCTTTTCTTTTATATCATGTGTAATTTATGGAAAATTTGCAAAGCATAGGTTGTACTTGTATATATCTATTTTAATTACCAAATATATGCATTTGTTATGTGTCATGCACCCCGTGGGTAAAGTTAACCAAAACTTTCACATCTGTGTTTGGATTGACTTTTTATTTTAAGTGTTTTAAAACATTTACATAGTCAATCCAAACAGATCTTTTAACATTGAGATTTACTTTTGAGAGAGATTTGTAATATAAATTTTACTCAAACCTTAAATTAAATGAGTGTCTCGATACCAATTAGCAATGAATGTCATTATAAATTTTACTCAAACCTTAAATTAAATGAGCACACATAGTCAAAGTGTCTTGATACCAATTAGCAATGAATAATTTTGACATGTATAATTCATATGGTTTTGTTAAACTATATAGAACAAAATGCAAATTTTAAAATTAAAAGGATTGAATTAAATTTAATCTTAAATGGTAGAAATTGAATTACTATTTTAAAATTGTAGAGGTCGACTTGGAAATGTGTTTATCTTTGCGAGTTATTAAAAATATATAATTTTGAAAATTTTAAAAATTTATAAAATATCAATGAATTTCTAATTTGGAATATTAATGAATAAAATGGTGTGATCTCTTTTAGTGCAATTGAGAACGATGGGATTTGAATCTTCTCTTGTATACACGTATAACGTTAAAATGTTCAATTCTTGTTCAAAAGAAATATAGTCTTTCTTAATAAATCGTGATGCTATAAAATTTAAAAAGAAAAACTGTATTTATTAACATTTTCATAACTAAGTTCAGTAAAGATTAATTTTCAAATACATAAAAAAAATTTCAAATATAAAAAAATAAATTAAAATATCACATTTTTTCTATAGTGGTAAATATATTAGGAATAGATTTGCAATATTTTGCTATATTTGTAAATTTCTTCGAAAGTTTGTTATTTAAAATAATTTTTCAAAAGTAATAATAATTCAATTGGTGTAAGTGGAGTTTGTGAATGACTTCTTTTTTAAAAAAAGATGTTGAATAGTCCTTGGTTGACATCAAATTTGAGTTGAATTACAAAAATACACTAGCATCTACACGAAAAAGCTGTCTCGTCTCGCTCGACCTTTCTCACATTGTTGGTGTCACTCATTGTTGAAGAAGAAGCCGAAGAAGAAGAAGAATCCGCCAAAAAACTTAAATCAACGTTGAAGTTAATGCTATAATTTCACGCGAGGATGACATCATCGAACTGCCATTCGATATTTTTCTTTAAAAAAAAGAAGTTTGAATCATTTATCATCTTGAGCTCTTAAAATGGGTGTTTTAGACAATACCCTTCAACTTGTAGGTGTGGCGCAACTCGTGAGGATTGTGATAGAGATTGGAGAAAAGGCTGAATATCAAAATTTGGCGAATAGCCTTCCATTTTGGTTTCCGCGATTAGCAGTTGGATTGAAATGGGAAGTAAAGCTCTTCCTCTGCTCAAAGGAGCTTCATCATTCCCATCGTTAAAGCGCCAAATCTTCATCTCTACCGCCTTCCATTCCCTACCTGTTTCCAACATCTCAATCCGAAATTCTTCGACTGCTTCAGGAATTTCATCTTCTCTTCAACCTCCCGATGTTCCCCGTTTAGCTCAAACAGCTCGAATTTCTCTCACTCCCACTCAGGTATGCAACGCCCTCACCTCCTCCATCTTTACTTCTATTTTTCTTCAATCTTTTATCCACTAACATCTGGTTATTCTTTATTATTCAGGCTGAAGAATTTGCGCCTAAAATTACTCAAGTTGTTGACTGGTGAGTTCCTCTCTCTCTTTCTCTCTCGCTCGCACGCGCATATACACAGACTCTTAGAAAGTAGTAAACCTTGAAACACGTTAGTGTATGATAATGCTGAAACCAAGATTAATATTAAGATTAAGATTAGAAGTCTGTGGCTTCTGTAGGCATGGTTTAGAGTTAGTTATTGGAAATCTTATCTTGTTTTCTTAGGTGAGATTGAGAAGATGGTTTGTGTTGGACGTAGGAGGTGGATTTTGTCCTCCATTATTGTCTTTGATGGTTTTGGTGGTCTTTAGGTAAATTATGATGAGACAATGGCCTGTGATGGCCGAAAAACTGAAGGAATCTTCACGAAGAGGTTGTATAGTGAGATTCTATGAATTGGCGTTTGCTTCTCTCAACTGAGAAAAGAGATTGAGTTTCATGCGAGATTGCATAATTTGTCTGGTTTACTTGATCGACTGTAACTTTTAGGGATATATAAAAGAACAAGAAAAAGCCGGGCAGGGCAACTTCTTAGGAGACAGTAGTTAAATTATTTGTCATCTTTGCAACCTTTTTTACATTAACTTGGGGGTATAAGATAATCTTATTGGCGAATTGGTTCATTGGAATGCCGTTCTGGTAGTTCTTTTTTTCCCCCTATTTGAAGTTAAAAATGCTCAAACGTTGAAACTTCCGCATAATGTTCATTGTTGTTTTTTTTAACAATCTGTAAGCATGAAGCTCATGGACCAAGAGTGCCTATAAATTGGATTGCCAGTCTTGTTACATTGGAAATCCAAGATACCCTTGTTTTGTGGTACAAACATTCTACTAGCTTCTTACTCTCTTTCAAGTTATAGCTCTTCAGTCAATGAAACTGTTTCCTATCAAAAAAGAAACGGCTACAACTCTTTATTCGAAGGGAAAATCATCTTAAGGCTTTGATAATATTAAGTATTCAGGATGGCTAAAGGGGATAACAGTCAGCAAACTTATTACTGGTGCTTTTCTGGGCATAGAGCACCATACAAAATTTTGTTACGTATGTTCGTCAACTGCCTAATTCAGTTGACAATAATAATCAATATCCATAATTTCTTCTTCAAACATTCAAATAGTGAAAAGTTACAAAAGGTATGTTCAAGGGGATTATTGAAGACAGATTCAATTAGTTTTAATAAGCAGTATATAACCCTTGTTAGCACGAATAAAAGTGCACCAAGGTAAACCAAATTGAATGAATTAGATCCCAAACTTCTTATATGACTCCCGTGACAGCATAAGATCAAATGACTGGAGATTCGGGAGTGAGGTACGGTCGCACAAAAGCTGTTCAATGCAGTGGGAAGGCTTCATTAGATAGCACCCAGACAAATCAAAAGAGTAAATGAGAATTCCAGATTTTATTTTATTTATTTTTTTTGGAGAAAGGACAATGTAGGGAGAGATGACAACAATTTCATACATCTTCCTGCCAAAGAACGCACCAGCTTGAGAGGAGAGAGCGTGGGGTAGCTTTTTTGAACCTTCGCAAAATTTGAGCCCCCATGAGCCGGGGTCAATCCAAAAATCTCACCTTTTTGGACACCTTCTTCCTCCAACTAACCTTAATTAATGGCTCTGAAGGGAAACGCCCCTATATTCTTTCATTATTTTTCAATGAAAATTGCTAGAATCTAAACTCCAACAATAAAATAGCCATTTATTCAGGAGTTCAAACATTTTCCAGAAGAAATGGCAGATCCATTCCCTCAAGATCTCTATAGCCCTTCTGAACTTTAGGTTCCACATGAGCCACATTCCTGACCCAGATGGAATCAAAATTAACGAGTAGGAAATTTTGGAGAACTTTTTCTTTAGAGGTTGTGAGGTGTCCATTTATCTGACCAAAAAGAAATTGACACAAATATCCACCTAACATTCATAATCACCTTCATCCTCTGTCTACCTCTAGCACTCGGGCTGTTTTACACTTCAGTTCTTGATAACTTTAATATGATAACATTACGTTTCAGGTTTGGGCAGCTCCAGACAGTTGATCTTCAAAGTATTGAACCATCCATTAGAGCAGGTGCATGCAATCACTTGTAGAAGTTCCTTGTTGTCAATCATTTTGCAACTTGCTTGTTATTTTTCTTCTAGCATGCCTTTGCTTGTTTCACTGTTAGTGTTGACTTTAAAATCACACAAATCTTCTCAAAATGGAAATTTTATATCACACAGTCATTATTTTTTTCATTGAAAAGTAATAATCATAAGACATGGAGGTACTGTAACTTGCCACAGAAACTAGTGAAATAATGAAGCGCATCAAGGAGGGGACAGCAGCAGTAGGAATGATTATGATTTGTCTTTTCTTGCCACAGAAACTTGTGCTATCAATTGCTATATAACTGATTATGATTTCAGAACCCCCCCCCCCCCACCCCACCCCCACCCCCACAGACATTTGTAAATGTTTCTGGAAGAGAACATTTTGAGCATGAATTATTTTAAAGTGATCAAAATGCTAAAATCACAAGAACTTTTGGCCGACAGAATAGGCAAACTAGTTCAACAATTTTTTTATTTTAAAAATAAAACTGCCGGGATGGAAGATTGAACTTCCAACCTCTATCACACCAATACCACTTAGTCAAACTCACTTTAGCATAGTGCAACAAAATTAGCACTAATTTTCCTACTCCTATGTACAGATACTGAAGTTGGCAATCAGCGGAACGACATTCCTGAAACATTTGAAAATAGGTAACTAACGAACTTGGTTACTTTGCAACTTGGGCTATCCCAAACTTTGGCAGGAAACTTGTTCATAACCCTCTTTTTTTTTCATGACCTCAGAGAGGCCATGATTGGCGCAGTTCCAGTCTTCGATGAGCCGTATATCAAAGTTCCCAAAGTTCTGAATAAGGAGTAG

mRNA sequence

ATGTATGCACTTCTAGGCATTGGAAGAGATGGTTGTTCAAACCACAGTGGGGAAACAGATGCAGAGGCATCTCCAGCCACCCCAGTTACATCTACTTCGTTGCCAGAGAATCATCAGACCACGACCAGTTCGATTCCGCTTCTTTCTAGTTCCGACACTCGCAGAAGTTCGTTTCATGGCCTTCAATTTCAACAATGCAGCAACGCCACTGCTGAGAGAAATCCTAATGGAGGAGATTCGGACAAACCTTCCATTTTGGTTTCCGCGATTAGCAGTTGGATTGAAATGGGAAGTAAAGCTCTTCCTCTGCTCAAAGGAGCTTCATCATTCCCATCGTTAAAGCGCCAAATCTTCATCTCTACCGCCTTCCATTCCCTACCTGTTTCCAACATCTCAATCCGAAATTCTTCGACTGCTTCAGGAATTTCATCTTCTCTTCAACCTCCCGATGTTCCCCGTTTAGCTCAAACAGCTCGAATTTCTCTCACTCCCACTCAGGCTGAAGAATTTGCGCCTAAAATTACTCAAGTTGTTGACTGGTTTGGGCAGCTCCAGACAGTTGATCTTCAAAGTATTGAACCATCCATTAGAGCAGATACTGAAGTTGGCAATCAGCGGAACGACATTCCTGAAACATTTGAAAATAGAGAGGCCATGATTGGCGCAGTTCCAGTCTTCGATGAGCCGTATATCAAAGTTCCCAAAGTTCTGAATAAGGAGTAG

Coding sequence (CDS)

ATGTATGCACTTCTAGGCATTGGAAGAGATGGTTGTTCAAACCACAGTGGGGAAACAGATGCAGAGGCATCTCCAGCCACCCCAGTTACATCTACTTCGTTGCCAGAGAATCATCAGACCACGACCAGTTCGATTCCGCTTCTTTCTAGTTCCGACACTCGCAGAAGTTCGTTTCATGGCCTTCAATTTCAACAATGCAGCAACGCCACTGCTGAGAGAAATCCTAATGGAGGAGATTCGGACAAACCTTCCATTTTGGTTTCCGCGATTAGCAGTTGGATTGAAATGGGAAGTAAAGCTCTTCCTCTGCTCAAAGGAGCTTCATCATTCCCATCGTTAAAGCGCCAAATCTTCATCTCTACCGCCTTCCATTCCCTACCTGTTTCCAACATCTCAATCCGAAATTCTTCGACTGCTTCAGGAATTTCATCTTCTCTTCAACCTCCCGATGTTCCCCGTTTAGCTCAAACAGCTCGAATTTCTCTCACTCCCACTCAGGCTGAAGAATTTGCGCCTAAAATTACTCAAGTTGTTGACTGGTTTGGGCAGCTCCAGACAGTTGATCTTCAAAGTATTGAACCATCCATTAGAGCAGATACTGAAGTTGGCAATCAGCGGAACGACATTCCTGAAACATTTGAAAATAGAGAGGCCATGATTGGCGCAGTTCCAGTCTTCGATGAGCCGTATATCAAAGTTCCCAAAGTTCTGAATAAGGAGTAG

Protein sequence

MYALLGIGRDGCSNHSGETDAEASPATPVTSTSLPENHQTTTSSIPLLSSSDTRRSSFHGLQFQQCSNATAERNPNGGDSDKPSILVSAISSWIEMGSKALPLLKGASSFPSLKRQIFISTAFHSLPVSNISIRNSSTASGISSSLQPPDVPRLAQTARISLTPTQAEEFAPKITQVVDWFGQLQTVDLQSIEPSIRADTEVGNQRNDIPETFENREAMIGAVPVFDEPYIKVPKVLNKE*
Homology
[Close]
BLAST of Chy4G068870 vs. ExPASy Swiss-Prot
Match: D7STK2 (Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial OS=Vitis vinifera OX=29760 GN=GATC PE=3 SV=1)

HSP 1 Score: 164.9 bits (416), Expect = 1.2e-39
Identity = 89/145 (61.38%), Postives = 109/145 (75.17%), Query Frame = 0 

Query: 96  MGSKALPLLKGASSFPSLKRQIFISTAFHSLPVSNISIRNSSTASGISSSLQPPDVPRLA 155
           MGS+AL LLK  ++    +  +F S +      S   IRNS+ +    S+L PPD+PRLA
Sbjct: 1   MGSRALLLLKATTA----ETLLFTSKS----TFSKALIRNSTRSFSTRSALLPPDLPRLA 60

Query: 156 QTARISLTPTQAEEFAPKITQVVDWFGQLQTVDLQSIEPSIRADTEVGNQRNDIPETFEN 215
           +TARISLTP + EEFAPKI QV+DWFGQLQ VDLQSIEPSIRADTE  N R+D PETFEN
Sbjct: 61  ETARISLTPHEVEEFAPKIRQVIDWFGQLQAVDLQSIEPSIRADTEGDNLRDDSPETFEN 120

Query: 216 REAMIGAVPVFDEPYIKVPKVLNKE 241
           REA+I A+P ++EPY+KVPKVLNK+
Sbjct: 121 REAIIAAIPSYEEPYLKVPKVLNKD 137

[Close]
BLAST of Chy4G068870 vs. ExPASy Swiss-Prot
Match: B9RRX2 (Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial OS=Ricinus communis OX=3988 GN=GATC PE=3 SV=1)

HSP 1 Score: 151.8 bits (382), Expect = 1.0e-35
Identity = 86/146 (58.90%), Postives = 103/146 (70.55%), Query Frame = 0 

Query: 96  MGSKALPLLKGASSFPSLKRQIFISTAFHSLPVSN-ISIRNSSTASGISSSLQPPDVPRL 155
           MGS+AL LLK A     LK QI         P S  ++ R  S  +   SSLQPPDV RL
Sbjct: 1   MGSRALLLLKVAL---PLKHQIKCLNYTKITPASELLTKRRFSIKATNGSSLQPPDVSRL 60

Query: 156 AQTARISLTPTQAEEFAPKITQVVDWFGQLQTVDLQSIEPSIRADTEVGNQRNDIPETFE 215
           A+TARISL   + EEFAPKI QV+DWFGQLQ VDL S+EP+IRAD+E  N R+D+PETF 
Sbjct: 61  AETARISLNQNEVEEFAPKIRQVIDWFGQLQAVDLNSVEPAIRADSEGENLRDDVPETFS 120

Query: 216 NREAMIGAVPVFDEPYIKVPKVLNKE 241
            REA+I AVP +++PY+KVPKVLNKE
Sbjct: 121 EREAIIAAVPSYEKPYVKVPKVLNKE 143

[Close]
BLAST of Chy4G068870 vs. ExPASy Swiss-Prot
Match: B9INH0 (Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial OS=Populus trichocarpa OX=3694 GN=GATC PE=3 SV=1)

HSP 1 Score: 147.9 bits (372), Expect = 1.5e-34
Identity = 85/145 (58.62%), Postives = 104/145 (71.72%), Query Frame = 0 

Query: 96  MGSKALPLLKGASSFPSLKRQIFISTAFHSLPVSNISIRNSSTASGISSSLQPPDVPRLA 155
           MGS+A+ LLKG S  P     +F+       P  +I  R ++ A+   SSL+PPDV RLA
Sbjct: 1   MGSRAVLLLKGPS--PPKHSILFLLNHKKISPAPSIR-RFTTKATANGSSLEPPDVARLA 60

Query: 156 QTARISLTPTQAEEFAPKITQVVDWFGQLQTVDLQSIEPSIRADTEVGNQRNDIPETFEN 215
           +TARISLTP Q EEF PKI QV+DW   L +VDL S+EPSIRADTE  N R+D PETFEN
Sbjct: 61  ETARISLTPQQVEEFGPKIRQVIDWHA-LLSVDLDSVEPSIRADTEGDNLRHDNPETFEN 120

Query: 216 REAMIGAVPVFDEPYIKVPKVLNKE 241
           REA+I AVP +++PY+KVPKVLNKE
Sbjct: 121 REAIIAAVPNYEDPYVKVPKVLNKE 141

[Close]
BLAST of Chy4G068870 vs. ExPASy Swiss-Prot
Match: A2XK57 (Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial OS=Oryza sativa subsp. indica OX=39946 GN=GATC PE=3 SV=1)

HSP 1 Score: 143.3 bits (360), Expect = 3.6e-33
Identity = 70/106 (66.04%), Postives = 87/106 (82.08%), Query Frame = 0 

Query: 136 SSTASGISSSLQPPDVPRLAQTARISLTPTQAEEFAPKITQVVDWFGQLQTVDLQSIEPS 195
           ++ A+  S +L+PPD+PRLA  ARISL+P +AEEFAPKI QVVDWFGQLQ VDL+S+EPS
Sbjct: 48  AAAAAAGSGALEPPDLPRLANAARISLSPEEAEEFAPKIRQVVDWFGQLQAVDLESVEPS 107

Query: 196 IRADTEVGNQ-RNDIPETFENREAMIGAVPVFDEPYIKVPKVLNKE 241
           +RA T  GN  R D PETF NR+A+I +VP +D+PYIKVP+VLNKE
Sbjct: 108 LRAGTAAGNSLREDRPETFTNRDAIIESVPSYDDPYIKVPRVLNKE 153

[Close]
BLAST of Chy4G068870 vs. ExPASy Swiss-Prot
Match: Q7XZZ1 (Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial OS=Oryza sativa subsp. japonica OX=39947 GN=GATC PE=2 SV=1)

HSP 1 Score: 143.3 bits (360), Expect = 3.6e-33
Identity = 70/106 (66.04%), Postives = 87/106 (82.08%), Query Frame = 0 

Query: 136 SSTASGISSSLQPPDVPRLAQTARISLTPTQAEEFAPKITQVVDWFGQLQTVDLQSIEPS 195
           ++ A+  S +L+PPD+PRLA  ARISL+P +AEEFAPKI QVVDWFGQLQ VDL+S+EPS
Sbjct: 48  AAAAAAGSGALEPPDLPRLANAARISLSPEEAEEFAPKIRQVVDWFGQLQAVDLESVEPS 107

Query: 196 IRADTEVGNQ-RNDIPETFENREAMIGAVPVFDEPYIKVPKVLNKE 241
           +RA T  GN  R D PETF NR+A+I +VP +D+PYIKVP+VLNKE
Sbjct: 108 LRAGTAAGNSLREDRPETFTNRDAIIESVPSYDDPYIKVPRVLNKE 153

[Close]
BLAST of Chy4G068870 vs. ExPASy TrEMBL
Match: A0A0A0LJU5 (Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial OS=Cucumis sativus OX=3659 GN=GATC PE=3 SV=1)

HSP 1 Score: 274.6 bits (701), Expect = 3.9e-70
Identity = 142/145 (97.93%), Postives = 144/145 (99.31%), Query Frame = 0 

Query: 96  MGSKALPLLKGASSFPSLKRQIFISTAFHSLPVSNISIRNSSTASGISSSLQPPDVPRLA 155
           MGSKALPLLKGASSFPSLKRQIFISTAFHSLPVSNISIRNSSTASGIS+SLQPPDVPRLA
Sbjct: 1   MGSKALPLLKGASSFPSLKRQIFISTAFHSLPVSNISIRNSSTASGISASLQPPDVPRLA 60

Query: 156 QTARISLTPTQAEEFAPKITQVVDWFGQLQTVDLQSIEPSIRADTEVGNQRNDIPETFEN 215
           QTARISLTPTQAEEFAPKITQVVDWFGQLQTVDLQSIEPSIRADTE G+QRNDIPETFEN
Sbjct: 61  QTARISLTPTQAEEFAPKITQVVDWFGQLQTVDLQSIEPSIRADTEGGSQRNDIPETFEN 120

Query: 216 REAMIGAVPVFDEPYIKVPKVLNKE 241
           REAMIGAVPVFDEPYIKVPKVLNKE
Sbjct: 121 REAMIGAVPVFDEPYIKVPKVLNKE 145

[Close]
BLAST of Chy4G068870 vs. ExPASy TrEMBL
Match: A0A5A7T6R5 (Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial OS=Cucumis melo var. makuwa OX=1194695 GN=GATC PE=3 SV=1)

HSP 1 Score: 268.5 bits (685), Expect = 2.8e-68
Identity = 137/145 (94.48%), Postives = 141/145 (97.24%), Query Frame = 0 

Query: 96  MGSKALPLLKGASSFPSLKRQIFISTAFHSLPVSNISIRNSSTASGISSSLQPPDVPRLA 155
           MGSKALPLLKGASSFPSLKRQIFISTAFHSLPVSNI+IR SSTASG+ +SLQPPDVPRLA
Sbjct: 1   MGSKALPLLKGASSFPSLKRQIFISTAFHSLPVSNITIRKSSTASGVLASLQPPDVPRLA 60

Query: 156 QTARISLTPTQAEEFAPKITQVVDWFGQLQTVDLQSIEPSIRADTEVGNQRNDIPETFEN 215
           QTARISLTPTQ EEFAPKITQVVDWFGQLQTVDLQSIEPSIRADTE GNQRND+PETFEN
Sbjct: 61  QTARISLTPTQVEEFAPKITQVVDWFGQLQTVDLQSIEPSIRADTEGGNQRNDVPETFEN 120

Query: 216 REAMIGAVPVFDEPYIKVPKVLNKE 241
           REAMIGAVPVFDEPYIKVPKVLNKE
Sbjct: 121 REAMIGAVPVFDEPYIKVPKVLNKE 145

[Close]
BLAST of Chy4G068870 vs. ExPASy TrEMBL
Match: A0A1S3CQE8 (Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial OS=Cucumis melo OX=3656 GN=LOC103503618 PE=3 SV=1)

HSP 1 Score: 268.5 bits (685), Expect = 2.8e-68
Identity = 137/145 (94.48%), Postives = 141/145 (97.24%), Query Frame = 0 

Query: 96  MGSKALPLLKGASSFPSLKRQIFISTAFHSLPVSNISIRNSSTASGISSSLQPPDVPRLA 155
           MGSKALPLLKGASSFPSLKRQIFISTAFHSLPVSNI+IR SSTASG+ +SLQPPDVPRLA
Sbjct: 1   MGSKALPLLKGASSFPSLKRQIFISTAFHSLPVSNITIRKSSTASGVLASLQPPDVPRLA 60

Query: 156 QTARISLTPTQAEEFAPKITQVVDWFGQLQTVDLQSIEPSIRADTEVGNQRNDIPETFEN 215
           QTARISLTPTQ EEFAPKITQVVDWFGQLQTVDLQSIEPSIRADTE GNQRND+PETFEN
Sbjct: 61  QTARISLTPTQVEEFAPKITQVVDWFGQLQTVDLQSIEPSIRADTEGGNQRNDVPETFEN 120

Query: 216 REAMIGAVPVFDEPYIKVPKVLNKE 241
           REAMIGAVPVFDEPYIKVPKVLNKE
Sbjct: 121 REAMIGAVPVFDEPYIKVPKVLNKE 145

[Close]
BLAST of Chy4G068870 vs. ExPASy TrEMBL
Match: A0A6J1CQ90 (Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial OS=Momordica charantia OX=3673 GN=LOC111013151 PE=3 SV=1)

HSP 1 Score: 228.8 bits (582), Expect = 2.4e-56
Identity = 120/147 (81.63%), Postives = 128/147 (87.07%), Query Frame = 0 

Query: 96  MGSKALPLLKGASSFPSLKRQIFISTA--FHSLPVSNISIRNSSTASGISSSLQPPDVPR 155
           MGSKALPLLKGA S PSL+RQIFI     FH+LP+S+  IR  ST   I +SLQPPDVPR
Sbjct: 1   MGSKALPLLKGALSLPSLQRQIFIYNGFQFHTLPISSNKIRKCSTTPRIRASLQPPDVPR 60

Query: 156 LAQTARISLTPTQAEEFAPKITQVVDWFGQLQTVDLQSIEPSIRADTEVGNQRNDIPETF 215
           LA+TARISLTPT+ EEFAPKI QVVDWFGQLQTVDLQSIEPSIRADTE GNQRNDI ETF
Sbjct: 61  LAETARISLTPTEVEEFAPKIRQVVDWFGQLQTVDLQSIEPSIRADTEGGNQRNDISETF 120

Query: 216 ENREAMIGAVPVFDEPYIKVPKVLNKE 241
           ENREAMIGAVPVFDEPYI+VPKVLNKE
Sbjct: 121 ENREAMIGAVPVFDEPYIRVPKVLNKE 147

[Close]
BLAST of Chy4G068870 vs. ExPASy TrEMBL
Match: A0A6J1FM33 (Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial OS=Cucurbita moschata OX=3662 GN=LOC111446647 PE=3 SV=1)

HSP 1 Score: 226.9 bits (577), Expect = 9.2e-56
Identity = 118/145 (81.38%), Postives = 127/145 (87.59%), Query Frame = 0 

Query: 96  MGSKALPLLKGASSFPSLKRQIFISTAFHSLPVSNISIRNSSTASGISSSLQPPDVPRLA 155
           MGS AL LLKGASS PSL  QIFIST+ +SLPVS+I IR  STA GI +SLQPPDVPRLA
Sbjct: 1   MGSGALRLLKGASSLPSLNPQIFISTSLNSLPVSSIRIRKCSTAPGIRASLQPPDVPRLA 60

Query: 156 QTARISLTPTQAEEFAPKITQVVDWFGQLQTVDLQSIEPSIRADTEVGNQRNDIPETFEN 215
           +TARISL P + EEFAPKI QVVDWFGQLQ VDLQSIEPSIRADTE GNQR+D+ ETFEN
Sbjct: 61  ETARISLNPNEVEEFAPKIRQVVDWFGQLQAVDLQSIEPSIRADTEGGNQRDDVSETFEN 120

Query: 216 REAMIGAVPVFDEPYIKVPKVLNKE 241
           REAMIGAVPVFDEPYI+VPKVLNKE
Sbjct: 121 REAMIGAVPVFDEPYIRVPKVLNKE 145

[Close]
BLAST of Chy4G068870 vs. NCBI nr
Match: XP_004136231.1 (glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial [Cucumis sativus] >KGN60306.1 hypothetical protein Csa_001068 [Cucumis sativus])

HSP 1 Score: 273 bits (699), Expect = 1.28e-90
Identity = 142/145 (97.93%), Postives = 144/145 (99.31%), Query Frame = 0 

Query: 96  MGSKALPLLKGASSFPSLKRQIFISTAFHSLPVSNISIRNSSTASGISSSLQPPDVPRLA 155
           MGSKALPLLKGASSFPSLKRQIFISTAFHSLPVSNISIRNSSTASGIS+SLQPPDVPRLA
Sbjct: 1   MGSKALPLLKGASSFPSLKRQIFISTAFHSLPVSNISIRNSSTASGISASLQPPDVPRLA 60

Query: 156 QTARISLTPTQAEEFAPKITQVVDWFGQLQTVDLQSIEPSIRADTEVGNQRNDIPETFEN 215
           QTARISLTPTQAEEFAPKITQVVDWFGQLQTVDLQSIEPSIRADTE G+QRNDIPETFEN
Sbjct: 61  QTARISLTPTQAEEFAPKITQVVDWFGQLQTVDLQSIEPSIRADTEGGSQRNDIPETFEN 120

Query: 216 REAMIGAVPVFDEPYIKVPKVLNKE 240
           REAMIGAVPVFDEPYIKVPKVLNKE
Sbjct: 121 REAMIGAVPVFDEPYIKVPKVLNKE 145

[Close]
BLAST of Chy4G068870 vs. NCBI nr
Match: XP_008466091.1 (PREDICTED: glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial [Cucumis melo] >KAA0038633.1 glutamyl-tRNA(Gln) amidotransferase subunit C [Cucumis melo var. makuwa] >TYK31232.1 glutamyl-tRNA(Gln) amidotransferase subunit C [Cucumis melo var. makuwa])

HSP 1 Score: 267 bits (683), Expect = 3.49e-88
Identity = 137/145 (94.48%), Postives = 141/145 (97.24%), Query Frame = 0 

Query: 96  MGSKALPLLKGASSFPSLKRQIFISTAFHSLPVSNISIRNSSTASGISSSLQPPDVPRLA 155
           MGSKALPLLKGASSFPSLKRQIFISTAFHSLPVSNI+IR SSTASG+ +SLQPPDVPRLA
Sbjct: 1   MGSKALPLLKGASSFPSLKRQIFISTAFHSLPVSNITIRKSSTASGVLASLQPPDVPRLA 60

Query: 156 QTARISLTPTQAEEFAPKITQVVDWFGQLQTVDLQSIEPSIRADTEVGNQRNDIPETFEN 215
           QTARISLTPTQ EEFAPKITQVVDWFGQLQTVDLQSIEPSIRADTE GNQRND+PETFEN
Sbjct: 61  QTARISLTPTQVEEFAPKITQVVDWFGQLQTVDLQSIEPSIRADTEGGNQRNDVPETFEN 120

Query: 216 REAMIGAVPVFDEPYIKVPKVLNKE 240
           REAMIGAVPVFDEPYIKVPKVLNKE
Sbjct: 121 REAMIGAVPVFDEPYIKVPKVLNKE 145

[Close]
BLAST of Chy4G068870 vs. NCBI nr
Match: XP_038897282.1 (glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial [Benincasa hispida] >XP_038897283.1 glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial [Benincasa hispida])

HSP 1 Score: 241 bits (616), Expect = 5.41e-78
Identity = 127/145 (87.59%), Postives = 131/145 (90.34%), Query Frame = 0 

Query: 96  MGSKALPLLKGASSFPSLKRQIFISTAFHSLPVSNISIRNSSTASGISSSLQPPDVPRLA 155
           MGSKALPLLKGASS PSLK +IFIST  HSLP S I IR  STAS I +SLQPPDVPRLA
Sbjct: 1   MGSKALPLLKGASSCPSLKLRIFISTGLHSLPASLIRIRKCSTASRILASLQPPDVPRLA 60

Query: 156 QTARISLTPTQAEEFAPKITQVVDWFGQLQTVDLQSIEPSIRADTEVGNQRNDIPETFEN 215
           +TARISLTPTQ EEFAPKI QVVDWFGQLQTVDLQSIEP+IRADTE GNQRNDIPETFEN
Sbjct: 61  ETARISLTPTQVEEFAPKIRQVVDWFGQLQTVDLQSIEPAIRADTEGGNQRNDIPETFEN 120

Query: 216 REAMIGAVPVFDEPYIKVPKVLNKE 240
           REAMIGAVPVFDEPYIKVPKVLNKE
Sbjct: 121 REAMIGAVPVFDEPYIKVPKVLNKE 145

[Close]
BLAST of Chy4G068870 vs. NCBI nr
Match: XP_022143239.1 (glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial [Momordica charantia] >XP_022143247.1 glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial [Momordica charantia])

HSP 1 Score: 228 bits (580), Expect = 1.71e-72
Identity = 120/147 (81.63%), Postives = 128/147 (87.07%), Query Frame = 0 

Query: 96  MGSKALPLLKGASSFPSLKRQIFISTAF--HSLPVSNISIRNSSTASGISSSLQPPDVPR 155
           MGSKALPLLKGA S PSL+RQIFI   F  H+LP+S+  IR  ST   I +SLQPPDVPR
Sbjct: 1   MGSKALPLLKGALSLPSLQRQIFIYNGFQFHTLPISSNKIRKCSTTPRIRASLQPPDVPR 60

Query: 156 LAQTARISLTPTQAEEFAPKITQVVDWFGQLQTVDLQSIEPSIRADTEVGNQRNDIPETF 215
           LA+TARISLTPT+ EEFAPKI QVVDWFGQLQTVDLQSIEPSIRADTE GNQRNDI ETF
Sbjct: 61  LAETARISLTPTEVEEFAPKIRQVVDWFGQLQTVDLQSIEPSIRADTEGGNQRNDISETF 120

Query: 216 ENREAMIGAVPVFDEPYIKVPKVLNKE 240
           ENREAMIGAVPVFDEPYI+VPKVLNKE
Sbjct: 121 ENREAMIGAVPVFDEPYIRVPKVLNKE 147

[Close]
BLAST of Chy4G068870 vs. NCBI nr
Match: XP_023521629.1 (glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial [Cucurbita pepo subsp. pepo] >XP_023521637.1 glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial [Cucurbita pepo subsp. pepo])

HSP 1 Score: 226 bits (575), Expect = 9.19e-72
Identity = 118/145 (81.38%), Postives = 127/145 (87.59%), Query Frame = 0 

Query: 96  MGSKALPLLKGASSFPSLKRQIFISTAFHSLPVSNISIRNSSTASGISSSLQPPDVPRLA 155
           M S AL LLKGASS PSL  QIFIST+ +SLPVSNI IR  STA GI +SLQPPDVPRLA
Sbjct: 1   MASGALRLLKGASSLPSLNPQIFISTSLNSLPVSNIRIRKCSTAPGIRASLQPPDVPRLA 60

Query: 156 QTARISLTPTQAEEFAPKITQVVDWFGQLQTVDLQSIEPSIRADTEVGNQRNDIPETFEN 215
           +TARISL P++ EEFAPKI QVVDWFGQLQ VDLQSIEPSIRADTE GNQR+D+ ETFEN
Sbjct: 61  ETARISLNPSEVEEFAPKIRQVVDWFGQLQAVDLQSIEPSIRADTEGGNQRDDVSETFEN 120

Query: 216 REAMIGAVPVFDEPYIKVPKVLNKE 240
           REAMIGAVPVFDEPYI+VPKVLNKE
Sbjct: 121 REAMIGAVPVFDEPYIRVPKVLNKE 145

[Close]
BLAST of Chy4G068870 vs. TAIR 10
Match: AT4G32915.1 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: regulation of translational fidelity; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glu-tRNAGln amidotransferase, C subunit (InterPro:IPR003837); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 132.5 bits (332), Expect = 4.6e-31
Identity = 64/111 (57.66%), Postives = 84/111 (75.68%), Query Frame = 0 

Query: 130 NISIRNSSTASGISSSLQPPDVPRLAQTARISLTPTQAEEFAPKITQVVDWFGQLQTVDL 189
           N  I  S ++   SS LQPPDV RLAQTARISLTP + EE   KI +V+DWFGQLQ VD+
Sbjct: 45  NHRIARSYSSDSDSSVLQPPDVARLAQTARISLTPAEIEECETKIRRVIDWFGQLQQVDV 104

Query: 190 QSIEPSIRADTEVGNQRNDIPETFENREAMIGAVPVFDEPYIKVPKVLNKE 241
            S+EP+IRA+ + GN R D PETF+NR+++  ++P F++ Y+KVPK+LNKE
Sbjct: 105 NSVEPAIRAEMDGGNLREDAPETFDNRDSIRASIPSFEDAYLKVPKILNKE 155

The following BLAST results are available for this feature:
BLAST of Chy4G068870 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
D7STK21.2e-3961.38Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial OS=Vi... [more]
B9RRX21.0e-3558.90Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial OS=Ri... [more]
B9INH01.5e-3458.62Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial OS=Po... [more]
A2XK573.6e-3366.04Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial OS=Or... [more]
Q7XZZ13.6e-3366.04Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial OS=Or... [more]
BLAST of Chy4G068870 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LJU53.9e-7097.93Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial OS=Cu... [more]
A0A5A7T6R52.8e-6894.48Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial OS=Cu... [more]
A0A1S3CQE82.8e-6894.48Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial OS=Cu... [more]
A0A6J1CQ902.4e-5681.63Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial OS=Mo... [more]
A0A6J1FM339.2e-5681.38Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial OS=Cu... [more]
BLAST of Chy4G068870 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004136231.11.28e-9097.93glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial [Cucu... [more]
XP_008466091.13.49e-8894.48PREDICTED: glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochon... [more]
XP_038897282.15.41e-7887.59glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial [Beni... [more]
XP_022143239.11.71e-7281.63glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial [Momo... [more]
XP_023521629.19.19e-7281.38glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial [Cucu... [more]
BLAST of Chy4G068870 vs. TAIR 10
Match NameE-valueIdentityDescription
AT4G32915.14.6e-3157.66FUNCTIONS IN: molecular_function unknown; INVOLVED IN: regulation of translation... [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D1.10.20.60coord: 148..188
e-value: 5.3E-7
score: 31.6
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 17..53
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..53
IPR003837Glu-tRNAGln amidotransferase C subunitTIGRFAMTIGR00135TIGR00135coord: 150..237
e-value: 7.4E-16
score: 56.3
IPR003837Glu-tRNAGln amidotransferase C subunitPFAMPF02686Glu-tRNAGlncoord: 162..233
e-value: 5.4E-8
score: 33.0
IPR003837Glu-tRNAGln amidotransferase C subunitPANTHERPTHR15004UNCHARACTERIZEDcoord: 113..240
IPR003837Glu-tRNAGln amidotransferase C subunitHAMAPMF_00122GatCcoord: 145..238
score: 18.519711
IPR036113Glu-tRNAGln amidotransferase superfamily, subunit CSUPERFAMILY141000Glu-tRNAGln amidotransferase C subunitcoord: 147..236

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Chy4G068870.1Chy4G068870.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0070681 glutaminyl-tRNAGln biosynthesis via transamidation
biological_process GO:0032543 mitochondrial translation
biological_process GO:0006450 regulation of translational fidelity
cellular_component GO:0009507 chloroplast
cellular_component GO:0030956 glutamyl-tRNA(Gln) amidotransferase complex
cellular_component GO:0005739 mitochondrion
molecular_function GO:0005524 ATP binding
molecular_function GO:0050567 glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity
molecular_function GO:0016740 transferase activity