Chy4G068620 (gene) Cucumber (hystrix) v1

Overview
NameChy4G068620
Typegene
OrganismCucumis hystrix (Cucumber (hystrix) v1)
DescriptionUnknown protein
LocationchrH04: 1301066 .. 1301566 (-)
RNA-Seq ExpressionChy4G068620
SyntenyChy4G068620
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACTCATATCTCGCTGGCGCGAACCGCCGATACTTGTTCGGCCCCATTCGCGCCAAAATGGAGCCCCAAATCACCGCTTGATCAACGAAACCTAAAACCCATTCGCATCAGACGGTATCCCGCCCCTGCTCTCCCATTCACTCAATTTCCACCATCACAATGATTTTCAATTTCACCCCTTCGATCATTCTCATATCGATCAGATCGGTGGAGTTTGTGTCAATCCTCACGATTCACCGAACGGAAAATTTTCAATTTTCAAATACACCGACACAGAGCGCGTTAAACACGAACTGTTCTTCGCAATCTTCATCCACTTTGCTCCGCCTTACGAGTTCAGATTCCGGATGTACGTAAGATCTCATCTACTCTTAAAATCTTCATAGGTTTCTCATTTCCGTATAAATTACCATTGTTTTAATTTGTTTAGAATCAGCTCTCAGAGCTCGCCTTGATCGCCTATCTTCACCTGAAATCCTTTAGGGCTCGAGTTCTTTAG

mRNA sequence

ATGACTCATATCTCGCTGGCGCGAACCGCCGATACTTGTTCGGCCCCATTCGCGCCAAAATGGAGCCCCAAATCACCGCTTGATCAACGAAACCTAAAACCCATTCGCATCAGACGGTATCCCGCCCCTGCTCTCCCATTCACTCAATTTCCACCATCACAAGCGCGTTAAACACGAACTGTTCTTCGCAATCTTCATCCACTTTGCTCCGCCTTACGAGTTCAGATTCCGGATAATCAGCTCTCAGAGCTCGCCTTGATCGCCTATCTTCACCTGAAATCCTTTAGGGCTCGAGTTCTTTAG

Coding sequence (CDS)

ATGACTCATATCTCGCTGGCGCGAACCGCCGATACTTGTTCGGCCCCATTCGCGCCAAAATGGAGCCCCAAATCACCGCTTGATCAACGAAACCTAAAACCCATTCGCATCAGACGGTATCCCGCCCCTGCTCTCCCATTCACTCAATTTCCACCATCACAAGCGCGTTAAACACGAACTGTTCTTCGCAATCTTCATCCACTTTGCTCCGCCTTACGAGTTCAGATTCCGGATAATCAGCTCTCAGAGCTCGCCTTGATCGCCTATCTTCACCTGAAATCCTTTAGGGCTCGAGTTCTTTAG

Protein sequence

MTHISLARTADTCSAPFAPKWSPKSPLDQRNLKPIRIRRYPAPALPFTQFPPSQAR*TRTVLRNLHPLCSALRVQIPDNQLSELALIAYLHLKSFRARVL*
Homology
[Close]
BLAST of Chy4G068620 vs. ExPASy TrEMBL
Match: A0A0A0LE68 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G895760 PE=4 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 5.1e-32
Identity = 80/108 (74.07%), Postives = 83/108 (76.85%), Query Frame = 0 

Query: 1   MTHISLARTADTCSAPFAPKWSPKSPLDQRNLKPIRIRRYPAPALPFTQFPPSQAR*TRT 60
           MTHISLARTADTC APFAPKWSPKSPLDQRNLKPIRIRRYPAPALPFTQFPPSQ      
Sbjct: 1   MTHISLARTADTCPAPFAPKWSPKSPLDQRNLKPIRIRRYPAPALPFTQFPPSQ------ 60

Query: 61  VLRNLHPLCSALRV--------QIPDNQLSELALIAYLHLKSFRARVL 101
             R  H L  A+ V        +IP+NQLSEL LIAYLH KSFRARVL
Sbjct: 61  --RVKHELFFAIFVHFAPPYEFRIPENQLSELDLIAYLHQKSFRARVL 100

[Close]
BLAST of Chy4G068620 vs. NCBI nr
Match: KGN60330.1 (hypothetical protein Csa_001095 [Cucumis sativus])

HSP 1 Score: 144 bits (362), Expect = 2.77e-42
Identity = 80/108 (74.07%), Postives = 83/108 (76.85%), Query Frame = 0 

Query: 1   MTHISLARTADTCSAPFAPKWSPKSPLDQRNLKPIRIRRYPAPALPFTQFPPSQAR*TRT 60
           MTHISLARTADTC APFAPKWSPKSPLDQRNLKPIRIRRYPAPALPFTQFPPSQ      
Sbjct: 1   MTHISLARTADTCPAPFAPKWSPKSPLDQRNLKPIRIRRYPAPALPFTQFPPSQ------ 60

Query: 61  VLRNLHPLCSALRV--------QIPDNQLSELALIAYLHLKSFRARVL 100
             R  H L  A+ V        +IP+NQLSEL LIAYLH KSFRARVL
Sbjct: 61  --RVKHELFFAIFVHFAPPYEFRIPENQLSELDLIAYLHQKSFRARVL 100

The following BLAST results are available for this feature:
BLAST of Chy4G068620 vs.
Match NameE-valueIdentityDescription
BLAST of Chy4G068620 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LE685.1e-3274.07Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G895760 PE=4 SV=1[more]
BLAST of Chy4G068620 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN60330.12.77e-4274.07hypothetical protein Csa_001095 [Cucumis sativus][more]
BLAST of Chy4G068620 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Chy4G068620.1Chy4G068620.1mRNA