Chy4G068380 (gene) Cucumber (hystrix) v1

Overview
NameChy4G068380
Typegene
OrganismCucumis hystrix (Cucumber (hystrix) v1)
DescriptionUnknown protein
LocationchrH04: 1075520 .. 1076773 (+)
RNA-Seq ExpressionChy4G068380
SyntenyChy4G068380
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
GTGCATTTCCGTCCGGTTAGGGAAGTTCGCTTTTTACTCCTTTTTCCCGCCGGAAAACCGCTTCAACCTCCGGAGAACCTCTACTCTCTTCTCAACAATGCTCATCTTCCTCATTTCCCCTTCTCCTTTAGCTTGGATTGGTCGGAGAATGGCGTTCGATTTTCAAGTAGTTGGTCCAGTGACTCGGTTGTGTTGTTTGCTCTGTTCTTTGTGAATGTGGTCACTCTCCTGCTCGTGGAAGGCTTGATCCTTACTGTTCGTGGTCATAACTACGACCTAAGTTTATTTTTCTGGATTTTTTATTTTGTTCGTGGTTCTGTTCTTTCTTTTCTTCTCCGGTTGTTTGTTGTTCGGCGAAGTGATCACACACGGAGACGTGTACGGAATGATTTCGGCATGAGATGGTACTATTTCAATTCTTTGTTTTTTCTGTGTTGGAGTTTTCTTGTAGCTTCACGATATTGTTATTCGCATCTTTTCAAGCTGATCATTCTCTATCATTACGTTCGCAGGGGTCGTACATTGTTTCGTTTTACCACAGTTTTAGAGAAGTGACAAACAATTTTTGTTCACGTTCTTGCCTTCTATAATTTTTGCTTCTTCTATGCAGCTTTTGTACTGGAAAAAAGTCTGACTTTTTTGGAATCTAAGGATGAAATGGTTGAATGGATAAACTTTTTTCTTGCTGGAAATTTTAGGAACTATTTGTCTTTATCTATCTATTCATTTAACCTTCAATTTTGTTTGTAGTTGTTTTTGTCCTCTTAAATTAGGACGCTGGACTTCGGCTTGAACTTTGAAGACCTTAATTGTATTTTAAAATAGATTATTTTGGTATTATATAGAGGTTGAACTATCGAATTTTAGCAATTCCTTATCGAACTGTCGTTTTAGTAATTATAATTCTATCTCGTGCTGTTCATTATTGAAGCATGTTGGCTTTGCTGATATAGTTTTAAATGAAGCTCGTTAATCAATTCGATTAAGTTGTTTCTTCTTTCCAATTTGATTATGTTCTTCTGTTAATAGGTCAAGAGTAAAAATAATGATAAAGGCAGTAATCTTTCATAACTGGAATTCTTCAAGCTCCTGGTTCCCCAATAGCCTCTGTAGTTCGAATATCTTGTATAATTTCAAAACTGAAATTTAATCCATGACTACTTGTAGAATCATATTTGCTATCTCACCCTGATTATAGTATTCACAGGTGGGGAAGACGAATCTGAATGTTCTGGGAGTCCTAACATGGCGTAG

mRNA sequence

GTGCATTTCCGTCCGGTTAGGGAAGTTCGCTTTTTACTCCTTTTTCCCGCCGGAAAACCGCTTCAACCTCCGGAGAACCTCTACTCTCTTCTCAACAATGCTCATCTTCCTCATTTCCCCTTCTCCTTTAGCTTGGATTGGTCGGAGAATGGCGTTCGATTTTCAAGTAGTTGGTCCAGTGACTCGGTTGTGTTGTTTGCTCTGTTCTTTGTGAATGTGGTCACTCTCCTGCTCGTGGAAGGCTTGATCCTTACTGTTCGTGGTCATAACTACGACCTAAGTTTATTTTTCTGGATTTTTTATTTTGTTCGTGGTTCTGTTCTTTCTTTTCTTCTCCGGTTGTTTGTTGTTCGGCGAAGTGATCACACACGGAGACAATCATATTTGCTATCTCACCCTGATTATAGTATTCACAGGTGGGGAAGACGAATCTGAATGTTCTGGGAGTCCTAACATGGCGTAG

Coding sequence (CDS)

GTGCATTTCCGTCCGGTTAGGGAAGTTCGCTTTTTACTCCTTTTTCCCGCCGGAAAACCGCTTCAACCTCCGGAGAACCTCTACTCTCTTCTCAACAATGCTCATCTTCCTCATTTCCCCTTCTCCTTTAGCTTGGATTGGTCGGAGAATGGCGTTCGATTTTCAAGTAGTTGGTCCAGTGACTCGGTTGTGTTGTTTGCTCTGTTCTTTGTGAATGTGGTCACTCTCCTGCTCGTGGAAGGCTTGATCCTTACTGTTCGTGGTCATAACTACGACCTAAGTTTATTTTTCTGGATTTTTTATTTTGTTCGTGGTTCTGTTCTTTCTTTTCTTCTCCGGTTGTTTGTTGTTCGGCGAAGTGATCACACACGGAGACAATCATATTTGCTATCTCACCCTGATTATAGTATTCACAGGTGGGGAAGACGAATCTGAATGTTCTGGGAGTCCTAACATGGCGTAG

Protein sequence

VHFRPVREVRFLLLFPAGKPLQPPENLYSLLNNAHLPHFPFSFSLDWSENGVRFSSSWSSDSVVLFALFFVNVVTLLLVEGLILTVRGHNYDLSLFFWIFYFVRGSVLSFLLRLFVVRRSDHTRRQSYLLSHPDYSIHRWGRRI*MFWES*HGVX
Homology
BLAST of Chy4G068380 vs. ExPASy TrEMBL
Match: A0A1S4E5J6 (uncharacterized protein LOC107992217 OS=Cucumis melo OX=3656 GN=LOC107992217 PE=4 SV=1)

HSP 1 Score: 238.8 bits (608), Expect = 1.5e-59
Identity = 125/150 (83.33%), Postives = 128/150 (85.33%), Query Frame = 0

Query: 1   VHFRPVREVRFLLLFPAGKPLQPPENLYSLLNNAHLPHFPFSFSLDWSENGVRFSSSWSS 60
           +HFRPVREVRF LLFPAGKPLQPPENLYS LNNAHLPHFPFSF  DWSE+GVR SSSWSS
Sbjct: 1   MHFRPVREVRFFLLFPAGKPLQPPENLYSRLNNAHLPHFPFSFRSDWSESGVRSSSSWSS 60

Query: 61  DSVVLFALFFVNVVTLLLVEGLILTVRGHNYDLSLFFWIFYFVRGSVLSFLLRLFVVRRS 120
           DSVVLF LFF NVVTLLLVEGLILTVRGHNYDLSLFFWI  FVRGSVLSFLLRLFVVRRS
Sbjct: 61  DSVVLFDLFFENVVTLLLVEGLILTVRGHNYDLSLFFWILDFVRGSVLSFLLRLFVVRRS 120

Query: 121 DHTRRQSYLLSHPDYSIHRWGRRI*MFWES 151
           DH RR+          I RWGRRI MFWES
Sbjct: 121 DH-RRKRIRNDFAMRCIDRWGRRICMFWES 149

BLAST of Chy4G068380 vs. ExPASy TrEMBL
Match: A0A5D3E6C4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G004700 PE=4 SV=1)

HSP 1 Score: 221.1 bits (562), Expect = 3.3e-54
Identity = 112/126 (88.89%), Postives = 116/126 (92.06%), Query Frame = 0

Query: 1   VHFRPVREVRFLLLFPAGKPLQPPENLYSLLNNAHLPHFPFSFSLDWSENGVRFSSSWSS 60
           +HFRPVREVRF LLFPAGKPLQPPENLYS LNNAHLPHFPFSF  DWSE+GVR SSSWSS
Sbjct: 1   MHFRPVREVRFFLLFPAGKPLQPPENLYSRLNNAHLPHFPFSFRSDWSESGVRSSSSWSS 60

Query: 61  DSVVLFALFFVNVVTLLLVEGLILTVRGHNYDLSLFFWIFYFVRGSVLSFLLRLFVVRRS 120
           DSVVLF LFF NVVTLLLVEGLILTVRGHNYDLSLFFWI  FVRGSVLSFLLRLFVVRRS
Sbjct: 61  DSVVLFDLFFENVVTLLLVEGLILTVRGHNYDLSLFFWILDFVRGSVLSFLLRLFVVRRS 120

Query: 121 DHTRRQ 127
           DH R++
Sbjct: 121 DHRRKR 126

BLAST of Chy4G068380 vs. NCBI nr
Match: XP_016903492.1 (PREDICTED: uncharacterized protein LOC107992217 [Cucumis melo])

HSP 1 Score: 240 bits (613), Expect = 6.55e-79
Identity = 125/153 (81.70%), Postives = 131/153 (85.62%), Query Frame = 0

Query: 1   VHFRPVREVRFLLLFPAGKPLQPPENLYSLLNNAHLPHFPFSFSLDWSENGVRFSSSWSS 60
           +HFRPVREVRF LLFPAGKPLQPPENLYS LNNAHLPHFPFSF  DWSE+GVR SSSWSS
Sbjct: 1   MHFRPVREVRFFLLFPAGKPLQPPENLYSRLNNAHLPHFPFSFRSDWSESGVRSSSSWSS 60

Query: 61  DSVVLFALFFVNVVTLLLVEGLILTVRGHNYDLSLFFWIFYFVRGSVLSFLLRLFVVRRS 120
           DSVVLF LFF NVVTLLLVEGLILTVRGHNYDLSLFFWI  FVRGSVLSFLLRLFVVRRS
Sbjct: 61  DSVVLFDLFFENVVTLLLVEGLILTVRGHNYDLSLFFWILDFVRGSVLSFLLRLFVVRRS 120

Query: 121 DHTRRQSYLLSHPDYS---IHRWGRRI*MFWES 150
           DH R++       D++   I RWGRRI MFWES
Sbjct: 121 DHRRKRI----RNDFAMRCIDRWGRRICMFWES 149

BLAST of Chy4G068380 vs. NCBI nr
Match: TYK31186.1 (uncharacterized protein E5676_scaffold455G004700 [Cucumis melo var. makuwa])

HSP 1 Score: 222 bits (565), Expect = 2.07e-71
Identity = 112/126 (88.89%), Postives = 116/126 (92.06%), Query Frame = 0

Query: 1   VHFRPVREVRFLLLFPAGKPLQPPENLYSLLNNAHLPHFPFSFSLDWSENGVRFSSSWSS 60
           +HFRPVREVRF LLFPAGKPLQPPENLYS LNNAHLPHFPFSF  DWSE+GVR SSSWSS
Sbjct: 1   MHFRPVREVRFFLLFPAGKPLQPPENLYSRLNNAHLPHFPFSFRSDWSESGVRSSSSWSS 60

Query: 61  DSVVLFALFFVNVVTLLLVEGLILTVRGHNYDLSLFFWIFYFVRGSVLSFLLRLFVVRRS 120
           DSVVLF LFF NVVTLLLVEGLILTVRGHNYDLSLFFWI  FVRGSVLSFLLRLFVVRRS
Sbjct: 61  DSVVLFDLFFENVVTLLLVEGLILTVRGHNYDLSLFFWILDFVRGSVLSFLLRLFVVRRS 120

Query: 121 DHTRRQ 126
           DH R++
Sbjct: 121 DHRRKR 126

BLAST of Chy4G068380 vs. NCBI nr
Match: KAG6606270.1 (hypothetical protein SDJN03_03587, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 52.4 bits (124), Expect = 8.94e-06
Identity = 30/51 (58.82%), Postives = 35/51 (68.63%), Query Frame = 0

Query: 76  LLLVEGLILTVRGHNYDLSLFFWIFYFVRGSVLSFLLRLFVVRRSDHTRRQ 126
           LLLVEGL+L VR H+YDLSLFF I  F+RGS         + RRSDH RR+
Sbjct: 22  LLLVEGLVLCVRDHDYDLSLFFRILDFLRGSA--------IFRRSDHIRRR 64

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A1S4E5J61.5e-5983.33uncharacterized protein LOC107992217 OS=Cucumis melo OX=3656 GN=LOC107992217 PE=... [more]
A0A5D3E6C43.3e-5488.89Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
Match NameE-valueIdentityDescription
XP_016903492.16.55e-7981.70PREDICTED: uncharacterized protein LOC107992217 [Cucumis melo][more]
TYK31186.12.07e-7188.89uncharacterized protein E5676_scaffold455G004700 [Cucumis melo var. makuwa][more]
KAG6606270.18.94e-0658.82hypothetical protein SDJN03_03587, partial [Cucurbita argyrosperma subsp. sorori... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Chy4G068380.1Chy4G068380.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane