Chy3G067080 (gene) Cucumber (hystrix) v1

Overview
NameChy3G067080
Typegene
OrganismCucumis hystrix (Cucumber (hystrix) v1)
DescriptionRNA polymerases N / 8 kDa subunit
LocationchrH03: 18767178 .. 18768002 (-)
RNA-Seq ExpressionChy3G067080
SyntenyChy3G067080
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAAGGAAATACCGAAGGGGTCAAACCCTGATTGGGATCGAGGCACGTAGGGTTGTGCAGAAAGCAGAAAGCGAAGATGATCATCCCAGTGCGTTGCTTCACTTGCGGGAAGGTAAGCTATGGACAACTATATTCAACATTGAGTTAAAGTTTCTTCTCAGAATTCCATTTTCCTGTTTTCTCTATCCTTCTATGTCCCACTGTCTTTGGGTTCTTGCCTACCCACCACCCCCAAAGTTTTCAATTACTCTCAACTCAACTCACCTCTTAGAACCCTTCGGTTGGGTGATTGGAAACAAGTGGGATCTTTACCTTGATCTTCTGAAGGCCGATTATTCAGAAGGGTAAGGGAGTGCAACACTTCACTTCATGTACATTTTGATTTCCGTCTTGGTTTCTTACAACATCCAAAAGCATACCTGTTTTACCTTGCCTTTTAGAAGAGATCCTAATGCATTTACTTTTCCCGTATTAGGGATGCACTTGATGCACTGGGTCTGGTTCGCTACTGCTGTAGACGAATGCTCATGACTCATGTTGACCTAATTGAGAAGCTTCTTAATTACAATAGTAATCCCTTTTCGCTCTCCTTCTCTTCCTTCATGCACGAGCTGTTTGCCTACTTCAGTTTTTCGCTGTCCTTTCACACATTTATCGCTTTCTGTTTCAGCTCTGGATAAGTCTGATACCAGTTAGGCGGGGGAAAAGTTTTCTGCTTGTTCATGTTCTGTGCTGTGCAGGAGTCAGTATTGGCGTTTAGTTAAAGAGAAGATTCAGTGCATGACTCGAGTTGAGCTGTGTCTTGGTGTCCCGCTCTGTTAA

mRNA sequence

ATGGAAAGGAAATACCGAAGGGGTCAAACCCTGATTGGGATCGAGGCACGTAGGGTTGTGCAGAAAGCAGAAAGCGAAGATGATCATCCCAGTGCGTTGCTTCACTTGCGGGAAGGTAAGCTATGGACAACTATATTCAACATTGAGTTAAAGTTTCTTCTCAGAATTCCATTTTCCTGTTTTCTCTATCCTTCTATGTCCCACTGTCTTTGGGTTCTTGCCTACCCACCACCCCCAAAGTTTTCAATTACTCTCAACTCAACTCACCTCTTAGAACCCTTCGGTTGGGTGATTGGAAACAAGTGGGATCTTTACCTTGATCTTCTGAAGGCCGATTATTCAGAAGGGAGTCAGTATTGGCGTTTAGTTAAAGAGAAGATTCAGTGCATGACTCGAGTTGAGCTGTGTCTTGGTGTCCCGCTCTGTTAA

Coding sequence (CDS)

ATGGAAAGGAAATACCGAAGGGGTCAAACCCTGATTGGGATCGAGGCACGTAGGGTTGTGCAGAAAGCAGAAAGCGAAGATGATCATCCCAGTGCGTTGCTTCACTTGCGGGAAGGTAAGCTATGGACAACTATATTCAACATTGAGTTAAAGTTTCTTCTCAGAATTCCATTTTCCTGTTTTCTCTATCCTTCTATGTCCCACTGTCTTTGGGTTCTTGCCTACCCACCACCCCCAAAGTTTTCAATTACTCTCAACTCAACTCACCTCTTAGAACCCTTCGGTTGGGTGATTGGAAACAAGTGGGATCTTTACCTTGATCTTCTGAAGGCCGATTATTCAGAAGGGAGTCAGTATTGGCGTTTAGTTAAAGAGAAGATTCAGTGCATGACTCGAGTTGAGCTGTGTCTTGGTGTCCCGCTCTGTTAA

Protein sequence

MERKYRRGQTLIGIEARRVVQKAESEDDHPSALLHLREGKLWTTIFNIELKFLLRIPFSCFLYPSMSHCLWVLAYPPPPKFSITLNSTHLLEPFGWVIGNKWDLYLDLLKADYSEGSQYWRLVKEKIQCMTRVELCLGVPLC*
Homology
[Close]
BLAST of Chy3G067080 vs. NCBI nr
Match: KAE8652040.1 (hypothetical protein Csa_018608 [Cucumis sativus])

HSP 1 Score: 200 bits (508), Expect = 1.89e-62
Identity = 111/194 (57.22%), Postives = 116/194 (59.79%), Query Frame = 0 

Query: 1   MERKYRRGQTLIGIEARRVVQKAESEDDHPSALLHLREGKLWTTIFNIELKFLLRIPFSC 60
           ME+KY+RGQTL+GIEARRVVQKAESEDDHPSALLHLREGKLWTTIFNIELKFLLRIPFSC
Sbjct: 1   MEKKYQRGQTLVGIEARRVVQKAESEDDHPSALLHLREGKLWTTIFNIELKFLLRIPFSC 60

Query: 61  FLYPSMSHCLWVLAYPPPPKFSITLNSTHLLEPFGWVIGNKWDLYLDLLKADYSEG---- 120
           FLYPSMSHCLWV                         IGNKWD YLDLL+ADYSEG    
Sbjct: 61  FLYPSMSHCLWV-------------------------IGNKWDHYLDLLQADYSEGQVSA 120

Query: 121 ------------------------------------------------SQYWRLVKEKIQ 142
                                                           SQYWRL+KEKIQ
Sbjct: 121 TRHFIYILISVLVSYNIQKHTCFTLPFRRDPNAFTFPVLGMHLMHWVWSQYWRLLKEKIQ 169

[Close]
BLAST of Chy3G067080 vs. NCBI nr
Match: KAG6419837.1 (hypothetical protein SASPL_116349 [Salvia splendens])

HSP 1 Score: 49.7 bits (117), Expect = 6.40e-05
Identity = 25/45 (55.56%), Postives = 30/45 (66.67%), Query Frame = 0 

Query: 95  GWVIGNKWDLYLDLLKADYSEGSQYWRLVKEKIQC----MTRVEL 135
           G VIGNKWD+YLDLL+ADYSEG     L+  +  C    MT V+L
Sbjct: 11  GKVIGNKWDMYLDLLQADYSEGDALDSLLLVRYCCRRMLMTHVDL 55

[Close]
BLAST of Chy3G067080 vs. NCBI nr
Match: XP_041992151.1 (DNA-directed RNA polymerases II, IV and V subunit 10-like [Salvia splendens])

HSP 1 Score: 49.7 bits (117), Expect = 8.25e-05
Identity = 25/45 (55.56%), Postives = 30/45 (66.67%), Query Frame = 0 

Query: 95  GWVIGNKWDLYLDLLKADYSEGSQYWRLVKEKIQC----MTRVEL 135
           G VIGNKWD+YLDLL+ADYSEG     L+  +  C    MT V+L
Sbjct: 11  GKVIGNKWDMYLDLLQADYSEGDALDSLLLVRYCCRRMLMTHVDL 55

[Close]
BLAST of Chy3G067080 vs. NCBI nr
Match: KAF2909906.1 (hypothetical protein DAI22_11g061800, partial [Oryza sativa Japonica Group])

HSP 1 Score: 49.7 bits (117), Expect = 1.18e-04
Identity = 29/68 (42.65%), Postives = 37/68 (54.41%), Query Frame = 0 

Query: 77  PPPKFSITLNSTHLLEPF-----GWVIGNKWDLYLDLLKADYSEGSQYWRLVKEKIQC-- 135
           P P+  I   +  ++ P      G VIGNKWDLYLDLL+ADY+EG     L   +  C  
Sbjct: 12  PSPEPPIPAAAAKMIIPVRCFTCGKVIGNKWDLYLDLLQADYTEGDALDALGLVRYCCRR 71

[Close]
BLAST of Chy3G067080 vs. NCBI nr
Match: VAH81139.1 (unnamed protein product [Triticum turgidum subsp. durum])

HSP 1 Score: 49.3 bits (116), Expect = 1.21e-04
Identity = 29/69 (42.03%), Postives = 37/69 (53.62%), Query Frame = 0 

Query: 71  WVLAYPPPPKFSITLNSTHLLEPFGWVIGNKWDLYLDLLKADYSEGSQYWRLVKEKIQC- 130
           W  ++P P +       T L+   G VIGNKWD YLDLL+ADY+EG     L   +  C 
Sbjct: 3   WENSWPLPEERD---QLTRLVFMLGQVIGNKWDHYLDLLQADYTEGDALDALGLVRYCCR 62

Query: 131 ---MTRVEL 135
              MT V+L
Sbjct: 63  RMLMTHVDL 68

[Close]
BLAST of Chy3G067080 vs. TAIR 10
Match: AT1G61700.1 (RNA polymerases N / 8 kDa subunit )

HSP 1 Score: 44.3 bits (103), Expect = 9.7e-05
Identity = 23/45 (51.11%), Postives = 28/45 (62.22%), Query Frame = 0 

Query: 95  GWVIGNKWDLYLDLLKADYSEGSQYWRLVKEKIQC----MTRVEL 136
           G VIGNKWD YL+LL+ADY+EG     L   +  C    MT V+L
Sbjct: 11  GKVIGNKWDTYLELLQADYAEGDALDALGLVRYCCRRMLMTHVDL 55

[Close]
BLAST of Chy3G067080 vs. TAIR 10
Match: AT1G11475.1 (RNA polymerases N / 8 kDa subunit )

HSP 1 Score: 43.9 bits (102), Expect = 1.3e-04
Identity = 23/45 (51.11%), Postives = 27/45 (60.00%), Query Frame = 0 

Query: 95  GWVIGNKWDLYLDLLKADYSEGSQYWRLVKEKIQC----MTRVEL 136
           G VIGNKWD YLDLL+ DY+EG     L   +  C    MT V+L
Sbjct: 11  GKVIGNKWDQYLDLLQLDYTEGDALDALQLVRYCCRRMLMTHVDL 55

The following BLAST results are available for this feature:
BLAST of Chy3G067080 vs.
Match NameE-valueIdentityDescription
BLAST of Chy3G067080 vs.
Match NameE-valueIdentityDescription
BLAST of Chy3G067080 vs. NCBI nr
Match NameE-valueIdentityDescription
KAE8652040.11.89e-6257.22hypothetical protein Csa_018608 [Cucumis sativus][more]
KAG6419837.16.40e-0555.56hypothetical protein SASPL_116349 [Salvia splendens][more]
XP_041992151.18.25e-0555.56DNA-directed RNA polymerases II, IV and V subunit 10-like [Salvia splendens][more]
KAF2909906.11.18e-0442.65hypothetical protein DAI22_11g061800, partial [Oryza sativa Japonica Group][more]
VAH81139.11.21e-0442.03unnamed protein product [Triticum turgidum subsp. durum][more]
BLAST of Chy3G067080 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G61700.19.7e-0551.11RNA polymerases N / 8 kDa subunit [more]
AT1G11475.11.3e-0451.11RNA polymerases N / 8 kDa subunit [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Chy3G067080.1Chy3G067080.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006351 transcription, DNA-templated
cellular_component GO:0055029 nuclear DNA-directed RNA polymerase complex
cellular_component GO:0031981 nuclear lumen
molecular_function GO:0046872 metal ion binding