Chy3G066370 (gene) Cucumber (hystrix) v1

Overview
NameChy3G066370
Typegene
OrganismCucumis hystrix (Cucumber (hystrix) v1)
DescriptionUnknown protein
LocationchrH03: 18358261 .. 18359566 (-)
RNA-Seq ExpressionChy3G066370
SyntenyChy3G066370
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTATTTCGGAACGAACGACTACACAACCGGTAGGGTTCCGTGTCAAAGAGATTTTGTTTTGGGCCAAATTTCGTATGTAAAGGCCCATTTCGATAATTGTGGGAAAAGAAAAATCTTTTATTCCCTATTTATAAAATTCTTAAACGAAAGTCATAAAATTGCTTGGTAAACATCAAATTTAAATTATATATTTAATTTCATTATCATATTTCCATGATAAAAGAAAATCGAGGGTGCAGATAGGGATATGGGATGTTAAAAATAATTTAAAAGATATTTTAAACTGATTTTATTGTTTGTTAAAACAAATTGTTGCTAAATATTTTTAAACTTTTGGTAAAACGCAATCTAATTTACTTTGAATTCCACTGACGAATGTAAAGTTGGCCACGAAGTCATGATTAAGAAAAGAAGGGAAAAACAGGTCCGTTTGATTTGGTCAACAGTGAACGTGGCAGACACGTGGACAACCGAAGTTGGGGGCCCAGTGAAGGTCTGACTGTAGCCGATTCTCCAACGCATCACGTTTCCGAGAAGAAAAAGGGAAAAACAAATTTTTAAATCCCATTAAGAAACGCATCGAAAGAACAAACCAATCCAGATTCAAGAGAGAGGAAGATTCAGAGAGAGGCGACGGAGTAGACGGGGGATTCGGCGTAGCCGCTAGGAAAGATTTCCTTTTCCCTTGCGGTGAAGAAGAACGGTTTCTGATTATATATATGGTAGTTTACTAAGATTGTCACAAGGAACTGCGATTTGTACTGCCCCTTCTCCCGTCATCACTCAGTCAAATCACGAGTAAGTTCTTCCCGTCAACTTGTTGTTTGTTTTTTCATCCTTTGTGTTTGATTGGATTTTCTCTTTTCGATGTATTTCATTGTTTTCATTGGTTCTTCCTGGGGGTTTTTGGGTAGTTTGTAATTTCAATTCGCAAAATTTTTCTGCAAATGGGTTTTTGTTTTTATCGAAATATCTTAATTAGGGGTTCAAAAGGTTTTGATTGGGTGGGATTTGTATTGGGTTGCGGGAGTTTTTCGTTTTGCTTTTCTTCCTTTATGAGTTTGTTGTGATTGAGTAATTCTTTACGATTATGATGATCGAATTCTGATGGGGGATTTGTATCTCTTTGATAGATTGATGGGGGCTTTGTTATAATTGAAGCCGTTTGGAATATATTTGGTCTGCAGGCTCAGCTTAATTGTTCCTGTGGATGTATCTTGTCGTCTTTCAAGAAGAAGATTGGCTTGTGAATTTGCCCAAATCCTTTCTGGGTATTCTCAGGCCTCCTTGTCCATCTATTGA

mRNA sequence

ATGGCTATTTCGGAACGAACGACTACACAACCGACACGTGGACAACCGAAGTTGGGGGCCCAGTGAAGGTCTGACTGTAGCCGATTCTCCAACGCATCACGTTTCCGAGAAGAAAAAGGGAAAAACAAATTTTTAAATCCCATTAAGAAACGCATCGAAAGAACAAACCAATCCAGATTCAAGAGAGAGGAAGATTCAGAGAGAGGCGACGGAGTAGACGGGGGATTCGGCGTAGCCGCTAGGAAAGATTTCCTTTTCCCTTGCGGTGAAGAAGAACGGTTTCTGATTATATATATGGTAGTTTACTAAGATTGTCACAAGGAACTGCGATTTGTACTGCCCCTTCTCCCGTCATCACTCAGTCAAATCACGAGCTCAGCTTAATTGTTCCTGTGGATGTATCTTGTCGTCTTTCAAGAAGAAGATTGGCTTGTGAATTTGCCCAAATCCTTTCTGGGTATTCTCAGGCCTCCTTGTCCATCTATTGA

Coding sequence (CDS)

ATGGCTATTTCGGAACGAACGACTACACAACCGACACGTGGACAACCGAAGTTGGGGGCCCAGTGAAGGTCTGACTGTAGCCGATTCTCCAACGCATCACGTTTCCGAGAAGAAAAAGGGAAAAACAAATTTTTAAATCCCATTAAGAAACGCATCGAAAGAACAAACCAATCCAGATTCAAGAGAGAGGAAGATTCAGAGAGAGGCGACGGAGTAGACGGGGGATTCGGCGTAGCCGCTAGGAAAGATTTCCTTTTCCCTTGCGGTGAAGAAGAACGGTTTCTGATTATATATATGGTAGTTTACTAAGATTGTCACAAGGAACTGCGATTTGTACTGCCCCTTCTCCCGTCATCACTCAGTCAAATCACGAGCTCAGCTTAATTGTTCCTGTGGATGTATCTTGTCGTCTTTCAAGAAGAAGATTGGCTTGTGAATTTGCCCAAATCCTTTCTGGGTATTCTCAGGCCTCCTTGTCCATCTATTGA

Protein sequence

MAISERTTTQPTRGQPKLGAQ*RSDCSRFSNASRFREEKGKNKFLNPIKKRIERTNQSRFKREEDSERGDGVDGGFGVAARKDFLFPCGEEERFLIIYMVVY*DCHKELRFVLPLLPSSLSQITSSA*LFLWMYLVVFQEEDWLVNLPKSFLGILRPPCPSIX
Homology
[Close]
BLAST of Chy3G066370 vs. ExPASy TrEMBL
Match: A0A0A0LN05 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G351600 PE=4 SV=1)

HSP 1 Score: 183.7 bits (465), Expect = 6.1e-43
Identity = 95/101 (94.06%), Postives = 95/101 (94.06%), Query Frame = 0 

Query: 1   MAISERTTTQPTRGQPKLGAQ*RSDCSRFSNASRFREEKGKNKFLNPIKKRIERTNQSRF 60
           MAISER TTQPTRGQPKLGAQ RSD SRFSNASRFREE GKNKFLNPIKKRIERTNQSRF
Sbjct: 1   MAISERMTTQPTRGQPKLGAQGRSDYSRFSNASRFREEIGKNKFLNPIKKRIERTNQSRF 60

Query: 61  KREEDSERGDGVDGGFGVAARKDFLFPCGEEERFLIIYMVV 102
           KREED ERGDGVDGGFGVAARKDFL PCGEEERFLIIYMVV
Sbjct: 61  KREEDPERGDGVDGGFGVAARKDFLSPCGEEERFLIIYMVV 101

[Close]
BLAST of Chy3G066370 vs. NCBI nr
Match: KGN62379.1 (hypothetical protein Csa_018717 [Cucumis sativus])

HSP 1 Score: 184 bits (467), Expect = 2.29e-56
Identity = 95/101 (94.06%), Postives = 95/101 (94.06%), Query Frame = 0 

Query: 1   MAISERTTTQPTRGQPKLGAQ*RSDCSRFSNASRFREEKGKNKFLNPIKKRIERTNQSRF 60
           MAISER TTQPTRGQPKLGAQ RSD SRFSNASRFREE GKNKFLNPIKKRIERTNQSRF
Sbjct: 1   MAISERMTTQPTRGQPKLGAQGRSDYSRFSNASRFREEIGKNKFLNPIKKRIERTNQSRF 60

Query: 61  KREEDSERGDGVDGGFGVAARKDFLFPCGEEERFLIIYMVV 101
           KREED ERGDGVDGGFGVAARKDFL PCGEEERFLIIYMVV
Sbjct: 61  KREEDPERGDGVDGGFGVAARKDFLSPCGEEERFLIIYMVV 101

[Close]
BLAST of Chy3G066370 vs. NCBI nr
Match: KAG6598285.1 (hypothetical protein SDJN03_08063, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 88.2 bits (217), Expect = 2.06e-19
Identity = 41/48 (85.42%), Postives = 42/48 (87.50%), Query Frame = 0 

Query: 115 LLPSSLSQITSSA*LFLWMYLVVFQEEDWLVNLPKSFLGILRPPCPSI 162
           LLPSSLSQ TSSA LFLWMYLVV QEEDWLVN P SFLGILRPPC S+
Sbjct: 20  LLPSSLSQTTSSASLFLWMYLVVIQEEDWLVNWPDSFLGILRPPCLSV 67

The following BLAST results are available for this feature:
BLAST of Chy3G066370 vs.
Match NameE-valueIdentityDescription
BLAST of Chy3G066370 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LN056.1e-4394.06Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G351600 PE=4 SV=1[more]
BLAST of Chy3G066370 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN62379.12.29e-5694.06hypothetical protein Csa_018717 [Cucumis sativus][more]
KAG6598285.12.06e-1985.42hypothetical protein SDJN03_08063, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of Chy3G066370 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..28
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..71
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 29..70

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Chy3G066370.1Chy3G066370.1mRNA