Chy3G066210 (gene) Cucumber (hystrix) v1

Overview


Name	Chy3G066210
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	Homeobox domain-containing protein
Location	chrH03: 18279295 .. 18279543 (-)
RNA-Seq Expression	Chy3G066210
Synteny	Chy3G066210

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGCTGAGAAGACCTGGCAGGAACAGAAGTTTCAACAGAGAGAATCCAGATATTTTGATTATGATGATTGCAGTGGATCAGATAATAAGAGGTTGTGAGCAGGACAAAGGAGATGGCACAGAGAGGAAGGGGATGGGCCCTTTAAAGCCTGCAACAAAGAGTGAGTGGTTTCTGCATCCCAAGAGCTATGATCTCTCTCCCTCCCTTTCTTGCTCTCCACCCCCTGGTTTTCTCTTGTGCGGCTGA

mRNA sequence

ATGGTGCTGAGAAGACCTGGCAGGAACAGAAGTTTCAACAGAGAGAATCCAGATATTTTGATTATGATGATTGCAGTGGATCAGATAATAAGAGGTTGTGAGCAGGACAAAGGAGATGGCACAGAGAGGAAGGGGATGGGCCCTTTAAAGCCTGCAACAAAGAGTGAGTGGTTTCTGCATCCCAAGAGCTATGATCTCTCTCCCTCCCTTTCTTGCTCTCCACCCCCTGGTTTTCTCTTGTGCGGCTGA

Coding sequence (CDS)

ATGGTGCTGAGAAGACCTGGCAGGAACAGAAGTTTCAACAGAGAGAATCCAGATATTTTGATTATGATGATTGCAGTGGATCAGATAATAAGAGGTTGTGAGCAGGACAAAGGAGATGGCACAGAGAGGAAGGGGATGGGCCCTTTAAAGCCTGCAACAAAGAGTGAGTGGTTTCTGCATCCCAAGAGCTATGATCTCTCTCCCTCCCTTTCTTGCTCTCCACCCCCTGGTTTTCTCTTGTGCGGCTGA

Protein sequence

MVLRRPGRNRSFNRENPDILIMMIAVDQIIRGCEQDKGDGTERKGMGPLKPATKSEWFLHPKSYDLSPSLSCSPPPGFLLCG*

Homology

[Close]

BLAST of Chy3G066210 vs. ExPASy TrEMBL
Match: A0A5A7V591 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold501G001300 PE=4 SV=1)

HSP 1 Score: 176.0 bits (445), Expect = 6.4e-41
Identity = 81/82 (98.78%), Postives = 81/82 (98.78%), Query Frame = 0


Query: 1  MVLRRPGRNRSFNRENPDILIMMIAVDQIIRGCEQDKGDGTERKGMGPLKPATKSEWFLH 60
          MVLRRPGRNRSFNRENPDILIMMIAVDQIIRGCEQDKGDGTERKGMGPLKPATKSEWFLH
Sbjct: 1  MVLRRPGRNRSFNRENPDILIMMIAVDQIIRGCEQDKGDGTERKGMGPLKPATKSEWFLH 60

Query: 61 PKSYDLSPSLSCSPPPGFLLCG 83
          PKSY LSPSLSCSPPPGFLLCG
Sbjct: 61 PKSYGLSPSLSCSPPPGFLLCG 82

[Close]

BLAST of Chy3G066210 vs. ExPASy TrEMBL
Match: A0A0A0LN23 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G351750 PE=4 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 2.3e-22
Identity = 53/56 (94.64%), Postives = 55/56 (98.21%), Query Frame = 0


Query: 1  MVLRRPGRNRSFNRENPDILIMMIAVDQIIRGCEQDKGDGTERKGMGPLKPATKSE 57
          MVLRRPGRNR+FNRENPDILIMMIAVDQIIRGCEQDKGDGTERKGMGPLKPATK +
Sbjct: 1  MVLRRPGRNRNFNRENPDILIMMIAVDQIIRGCEQDKGDGTERKGMGPLKPATKRD 56

[Close]

BLAST of Chy3G066210 vs. ExPASy TrEMBL
Match: A0A0R0JC99 (Uncharacterized protein OS=Glycine max OX=3847 GN=GLYMA_06G051700 PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 2.2e-09
Identity = 38/54 (70.37%), Postives = 40/54 (74.07%), Query Frame = 0


Query: 1  MVLRRPGRNRSFNRENPDILIMMIAVDQIIRGCEQDKGDGTERKGMGPLKPATK 55
          M LR P  NRS NRENPDIL MMIA  QIIRG E DK D  ERK MGP+KPAT+
Sbjct: 1  MFLRVPAMNRSLNRENPDILNMMIAGKQIIRGVEDDKRDQRERK-MGPVKPATQ 53

[Close]

BLAST of Chy3G066210 vs. ExPASy TrEMBL
Match: A0A6A5PA14 (Homeobox domain-containing protein OS=Lupinus albus OX=3870 GN=Lal_00001993 PE=3 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 2.2e-09
Identity = 38/55 (69.09%), Postives = 41/55 (74.55%), Query Frame = 0


Query: 1  MVLRRPGRNRSFNRENPDILIMMIAVDQIIRGCEQDKGDGTER-KGMGPLKPATK 55
          M LR    NRS NRENPDILIMMIA  QIIRG E+DK D  ER K MGP+KPAT+
Sbjct: 1  MFLRHSAMNRSLNRENPDILIMMIAGKQIIRGGEEDKRDQREREKKMGPVKPATE 55

[Close]

BLAST of Chy3G066210 vs. ExPASy TrEMBL
Match: A0A6A4PQS0 (Putative transcription factor Homeodomain-TALE-BEL family OS=Lupinus albus OX=3870 GN=Lalb_Chr11g0063111 PE=3 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 2.2e-09
Identity = 38/55 (69.09%), Postives = 41/55 (74.55%), Query Frame = 0


Query: 1  MVLRRPGRNRSFNRENPDILIMMIAVDQIIRGCEQDKGDGTER-KGMGPLKPATK 55
          M LR    NRS NRENPDILIMMIA  QIIRG E+DK D  ER K MGP+KPAT+
Sbjct: 1  MFLRHSAMNRSLNRENPDILIMMIAGKQIIRGGEEDKRDQREREKKMGPVKPATE 55

[Close]

BLAST of Chy3G066210 vs. NCBI nr
Match: KAA0060995.1 (hypothetical protein E6C27_scaffold501G001300 [Cucumis melo var. makuwa])

HSP 1 Score: 176 bits (446), Expect = 1.17e-55
Identity = 81/82 (98.78%), Postives = 81/82 (98.78%), Query Frame = 0


Query: 1  MVLRRPGRNRSFNRENPDILIMMIAVDQIIRGCEQDKGDGTERKGMGPLKPATKSEWFLH 60
          MVLRRPGRNRSFNRENPDILIMMIAVDQIIRGCEQDKGDGTERKGMGPLKPATKSEWFLH
Sbjct: 1  MVLRRPGRNRSFNRENPDILIMMIAVDQIIRGCEQDKGDGTERKGMGPLKPATKSEWFLH 60

Query: 61 PKSYDLSPSLSCSPPPGFLLCG 82
          PKSY LSPSLSCSPPPGFLLCG
Sbjct: 61 PKSYGLSPSLSCSPPPGFLLCG 82

[Close]

BLAST of Chy3G066210 vs. NCBI nr
Match: KAG7029268.1 (hypothetical protein SDJN02_07606, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 121 bits (303), Expect = 3.48e-33
Identity = 63/82 (76.83%), Postives = 63/82 (76.83%), Query Frame = 0


Query: 1  MVLRRPGRNRSFNRENPDILIMMIAVDQIIRGCEQDKGDGTERKGMGPLKPATKSEWFLH 60
          MVLRR GRNRSFNRENPDILIMMIAVDQIIRG EQDKGDGTERKGMGPLKP TKSEW   
Sbjct: 1  MVLRRLGRNRSFNRENPDILIMMIAVDQIIRGHEQDKGDGTERKGMGPLKPVTKSEWLCT 60

Query: 61 PKSYDLSP-SLSCSPPPGFLLC 81
               LSP SL  SP P    C
Sbjct: 61 QGQISLSPLSLLLSPHPLVFSC 82

[Close]

BLAST of Chy3G066210 vs. NCBI nr
Match: KGN62652.2 (hypothetical protein Csa_018750 [Cucumis sativus])

HSP 1 Score: 115 bits (287), Expect = 4.54e-31
Identity = 53/56 (94.64%), Postives = 55/56 (98.21%), Query Frame = 0


Query: 1  MVLRRPGRNRSFNRENPDILIMMIAVDQIIRGCEQDKGDGTERKGMGPLKPATKSE 56
          MVLRRPGRNR+FNRENPDILIMMIAVDQIIRGCEQDKGDGTERKGMGPLKPATK +
Sbjct: 1  MVLRRPGRNRNFNRENPDILIMMIAVDQIIRGCEQDKGDGTERKGMGPLKPATKRD 56

[Close]

BLAST of Chy3G066210 vs. NCBI nr
Match: KAF3975862.1 (hypothetical protein CMV_000902 [Castanea mollissima])

HSP 1 Score: 81.6 bits (200), Expect = 6.20e-18
Identity = 38/54 (70.37%), Postives = 44/54 (81.48%), Query Frame = 0


Query: 1  MVLRRPGRNRSFNRENPDILIMMIAVDQIIRGCEQDKGDGTERKGMGPLKPATK 54
          MVLRRPG NRS NRENPDILIMM A  QI+RG  +DKG+  E++GMGPLKP T+
Sbjct: 1  MVLRRPGMNRSLNRENPDILIMMNAEQQIMRGGGEDKGEKREKEGMGPLKPVTQ 54

[Close]

BLAST of Chy3G066210 vs. NCBI nr
Match: KAG6674396.1 (hypothetical protein I3842_15G039000 [Carya illinoinensis])

HSP 1 Score: 80.5 bits (197), Expect = 2.08e-17
Identity = 42/80 (52.50%), Postives = 51/80 (63.75%), Query Frame = 0


Query: 1  MVLRRPGRNRSFNRENPDILIMMIAVDQIIRGCEQDKGDGTERKGMGPLKPATKSEWFLH 60
          M LRRPG NRS NRENPDILI+MIA +QI+RG  +DKGD  +R+GMGPLK A +      
Sbjct: 1  MGLRRPGMNRSLNRENPDILIVMIAEEQIMRGGGEDKGDQRQREGMGPLKTAAEMS---- 60

Query: 61 PKSYDLSPSLSCSPPPGFLL 80
                +P  +  PPP   L
Sbjct: 61 ----GTAPKGNVFPPPSLSL 72

The following BLAST results are available for this feature:

BLAST of Chy3G066210 vs.


Match Name	E-value	Identity	Description

BLAST of Chy3G066210 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7V591	6.4e-41	98.78	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A0A0LN23	2.3e-22	94.64	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G351750 PE=4 SV=1	[more]
A0A0R0JC99	2.2e-09	70.37	Uncharacterized protein OS=Glycine max OX=3847 GN=GLYMA_06G051700 PE=4 SV=1	[more]
A0A6A5PA14	2.2e-09	69.09	Homeobox domain-containing protein OS=Lupinus albus OX=3870 GN=Lal_00001993 PE=3...	[more]
A0A6A4PQS0	2.2e-09	69.09	Putative transcription factor Homeodomain-TALE-BEL family OS=Lupinus albus OX=38...	[more]

BLAST of Chy3G066210 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0060995.1	1.17e-55	98.78	hypothetical protein E6C27_scaffold501G001300 [Cucumis melo var. makuwa]	[more]
KAG7029268.1	3.48e-33	76.83	hypothetical protein SDJN02_07606, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KGN62652.2	4.54e-31	94.64	hypothetical protein Csa_018750 [Cucumis sativus]	[more]
KAF3975862.1	6.20e-18	70.37	hypothetical protein CMV_000902 [Castanea mollissima]	[more]
KAG6674396.1	2.08e-17	52.50	hypothetical protein I3842_15G039000 [Carya illinoinensis]	[more]

BLAST of Chy3G066210 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy3G066210.1	Chy3G066210.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009451	RNA modification
cellular_component	GO:0043231	intracellular membrane-bounded organelle
cellular_component	GO:0016020	membrane
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0008270	zinc ion binding