Chy3G066120 (gene) Cucumber (hystrix) v1

Overview


Name	Chy3G066120
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	Arabinogalactan peptide
Location	chrH03: 18228778 .. 18228966 (+)
RNA-Seq Expression	Chy3G066120
Synteny	Chy3G066120

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCGCCCTCCCCAAACTTTCTCTCCTGGCTCTCATTGCCGTCATCTTCGCCCTTTCCTCCGTCGCCGCTCAGGAGGCTCCGGCTCCCAGTCCGGCCTCCCCTGCCACCTCCATTGCTCCTTCGGCCGTCTCCGCTTGCCTTGCTGCTTTCCTTGCTCTCGCCTTCGGATCTACTCTCAGGATCTGA

mRNA sequence

ATGGCCGCCCTCCCCAAACTTTCTCTCCTGGCTCTCATTGCCGTCATCTTCGCCCTTTCCTCCGTCGCCGCTCAGGAGGCTCCGGCTCCCAGTCCGGCCTCCCCTGCCACCTCCATTGCTCCTTCGGCCGTCTCCGCTTGCCTTGCTGCTTTCCTTGCTCTCGCCTTCGGATCTACTCTCAGGATCTGA

Coding sequence (CDS)

ATGGCCGCCCTCCCCAAACTTTCTCTCCTGGCTCTCATTGCCGTCATCTTCGCCCTTTCCTCCGTCGCCGCTCAGGAGGCTCCGGCTCCCAGTCCGGCCTCCCCTGCCACCTCCATTGCTCCTTCGGCCGTCTCCGCTTGCCTTGCTGCTTTCCTTGCTCTCGCCTTCGGATCTACTCTCAGGATCTGA

Protein sequence

MAALPKLSLLALIAVIFALSSVAAQEAPAPSPASPATSIAPSAVSACLAAFLALAFGSTLRI*

Homology

[Close]

BLAST of Chy3G066120 vs. ExPASy TrEMBL
Match: A0A0A0LKU1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G351840 PE=4 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 8.4e-17
Identity = 59/62 (95.16%), Postives = 61/62 (98.39%), Query Frame = 0


Query: 1   MAALPKLSLLALIAVIFALSSVAAQEAPAPSPASPATSIAPSAVSACLAAFLALAFGSTL 60
           MAAL K+SLLALIA+IFALSSVAAQEAPAPSPASPATSIAPSAVSACLAAFLALAFGSTL
Sbjct: 67  MAALSKVSLLALIALIFALSSVAAQEAPAPSPASPATSIAPSAVSACLAAFLALAFGSTL 126

Query: 61  RI 63
           RI
Sbjct: 127 RI 128

[Close]

BLAST of Chy3G066120 vs. ExPASy TrEMBL
Match: Q96504 (CRG16 OS=Cucumis sativus OX=3659 GN=Csa_4G645890 PE=2 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 2.5e-05
Identity = 37/64 (57.81%), Postives = 48/64 (75.00%), Query Frame = 0


Query: 1  MAALPKLSLLALIAVIFALSSVA---AQEAPAPSPASPATSIAPSAVSACLAAFLALAFG 60
          MAA+ K+S +AL+AV+FA+ SVA   + E+PAP PASPA S+ PS   AC+ AFLAL FG
Sbjct: 1  MAAVSKVSFMALVAVLFAVLSVAVAQSAESPAPPPASPANSVVPSLSFACVGAFLALLFG 60

Query: 61 STLR 62
          S L+
Sbjct: 61 SALK 64

[Close]

BLAST of Chy3G066120 vs. ExPASy TrEMBL
Match: A0A2Z6NC77 (Uncharacterized protein OS=Trifolium subterraneum OX=3900 GN=TSUD_06290 PE=4 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 2.8e-04
Identity = 37/61 (60.66%), Postives = 47/61 (77.05%), Query Frame = 0


Query: 3  ALPKLSLLALIAVIFALSSVA-AQEAPAPSPASPATSIAPSAVSACLAAFLALAFGSTLR 62
          A   + LLA +AVIF++ S+A A +APAPSPASPATS++PS V+  +AA  ALAFGS LR
Sbjct: 2  ASTNMMLLATMAVIFSVISIASAADAPAPSPASPATSVSPSFVAGLVAAVAALAFGSNLR 61

[Close]

BLAST of Chy3G066120 vs. ExPASy TrEMBL
Match: A0A2P5EL16 (Arabinogalactan peptide OS=Trema orientale OX=63057 GN=TorRG33x02_180590 PE=4 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 3.6e-04
Identity = 35/59 (59.32%), Postives = 45/59 (76.27%), Query Frame = 0


Query: 8  SLLALIAVIFALSSVA----AQEAPAPSPASPATSIAPSAVSACLAAFLALAFGSTLRI 63
          SL+ L+AVI  + SV     A EAPAPSPASPA++I+PS +SACLAA +AL FGS +R+
Sbjct: 9  SLIVLMAVIVTVLSVVGAAHAAEAPAPSPASPASAISPSFLSACLAALVALVFGSAVRV 67

[Close]

BLAST of Chy3G066120 vs. ExPASy TrEMBL
Match: A0A5N5HNG8 (Uncharacterized protein OS=Pyrus ussuriensis x Pyrus communis OX=2448454 GN=D8674_032566 PE=4 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 6.2e-04
Identity = 38/64 (59.38%), Postives = 45/64 (70.31%), Query Frame = 0


Query: 1  MAALPKLSLLALIAVIFALSSV--AAQEAPAPSPASPATSIAPSAVSACLAAFLALAFGS 60
          MA     S+LAL+AV+FA+ S   AAQE+PAPSP SPA SI PS VSA +A    LAFGS
Sbjct: 1  MAVSKASSVLALVAVLFAVLSAIGAAQESPAPSPTSPAASIYPSFVSALVAVVATLAFGS 60

Query: 61 TLRI 63
           LR+
Sbjct: 61 ALRV 64

[Close]

BLAST of Chy3G066120 vs. NCBI nr
Match: KGN62403.1 (hypothetical protein Csa_018595 [Cucumis sativus])

HSP 1 Score: 95.5 bits (236), Expect = 2.01e-23
Identity = 59/62 (95.16%), Postives = 61/62 (98.39%), Query Frame = 0


Query: 1   MAALPKLSLLALIAVIFALSSVAAQEAPAPSPASPATSIAPSAVSACLAAFLALAFGSTL 60
           MAAL K+SLLALIA+IFALSSVAAQEAPAPSPASPATSIAPSAVSACLAAFLALAFGSTL
Sbjct: 67  MAALSKVSLLALIALIFALSSVAAQEAPAPSPASPATSIAPSAVSACLAAFLALAFGSTL 126

Query: 61  RI 62
           RI
Sbjct: 127 RI 128

[Close]

BLAST of Chy3G066120 vs. NCBI nr
Match: KAG6598305.1 (hypothetical protein SDJN03_08083, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 80.5 bits (197), Expect = 1.70e-17
Identity = 48/62 (77.42%), Postives = 57/62 (91.94%), Query Frame = 0


Query: 1   MAALPKLSLLALIAVIFALSSVAAQEAPAPSPASPATSIAPSAVSACLAAFLALAFGSTL 60
           MA + + SL+ALIA++FA++SVAA EAPAPSPASPATSIAPS VSAC+AAF+ALAFGSTL
Sbjct: 68  MAGVSQASLVALIAIVFAVASVAATEAPAPSPASPATSIAPSFVSACVAAFVALAFGSTL 127

Query: 61  RI 62
           RI
Sbjct: 128 RI 129

[Close]

BLAST of Chy3G066120 vs. NCBI nr
Match: KAG6585732.1 (CXXC motif containing zinc binding protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 70.1 bits (170), Expect = 2.12e-12
Identity = 43/55 (78.18%), Postives = 49/55 (89.09%), Query Frame = 0


Query: 8   SLLALIAVIFALSSVAAQEAPAPSPASPATSIAPSAVSACLAAFLALAFGSTLRI 62
           SL+ALIA+I A++SVAAQEAPAPSPASPA+SIAPS VSAC A F+AL  GSTLRI
Sbjct: 212 SLMALIALIIAVASVAAQEAPAPSPASPASSIAPSFVSACTAFFVALVLGSTLRI 266

[Close]

BLAST of Chy3G066120 vs. NCBI nr
Match: KGN55315.1 (hypothetical protein Csa_012200 [Cucumis sativus] >BAA08394.1 CRG16 [Cucumis sativus] >BAA11428.1 CRG16 [Cucumis sativus])

HSP 1 Score: 57.0 bits (136), Expect = 6.22e-09
Identity = 37/64 (57.81%), Postives = 48/64 (75.00%), Query Frame = 0


Query: 1  MAALPKLSLLALIAVIFALSSVA---AQEAPAPSPASPATSIAPSAVSACLAAFLALAFG 60
          MAA+ K+S +AL+AV+FA+ SVA   + E+PAP PASPA S+ PS   AC+ AFLAL FG
Sbjct: 1  MAAVSKVSFMALVAVLFAVLSVAVAQSAESPAPPPASPANSVVPSLSFACVGAFLALLFG 60

[Close]

BLAST of Chy3G066120 vs. NCBI nr
Match: KAG7024335.1 (hypothetical protein SDJN02_13149, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 56.6 bits (135), Expect = 1.53e-08
Identity = 36/64 (56.25%), Postives = 48/64 (75.00%), Query Frame = 0


Query: 1  MAALPKLSLLALIAVIFALSSVA---AQEAPAPSPASPATSIAPSAVSACLAAFLALAFG 60
          MAA+ K S +AL+AV+F + SVA   + E+PAP+PASPATS+ PS   AC+ AF+AL FG
Sbjct: 24 MAAVSKTSFMALVAVLFTVVSVAVAQSAESPAPAPASPATSVVPSLSVACVGAFVALVFG 83

[Close]

BLAST of Chy3G066120 vs. TAIR 10
Match: AT5G11740.1 (arabinogalactan protein 15 )

HSP 1 Score: 42.4 bits (98), Expect = 1.6e-04
Identity = 30/60 (50.00%), Postives = 42/60 (70.00%), Query Frame = 0


Query: 3  ALPKLSLLALIAVIFALSSVAAQEAPAPSPASPATSIAPSAVSACLAAFLALAFGSTLRI 62
          A+ K S++ L+ VI ++ + A  EAPAPSP S +++I+ S VSA +AA  AL FGS LRI
Sbjct: 2  AISKASIVVLMMVIISVVASAQSEAPAPSPTSGSSAISASFVSAGVAAVAALVFGSALRI 61

The following BLAST results are available for this feature:

BLAST of Chy3G066120 vs.


Match Name	E-value	Identity	Description

BLAST of Chy3G066120 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LKU1	8.4e-17	95.16	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G351840 PE=4 SV=1	[more]
Q96504	2.5e-05	57.81	CRG16 OS=Cucumis sativus OX=3659 GN=Csa_4G645890 PE=2 SV=1	[more]
A0A2Z6NC77	2.8e-04	60.66	Uncharacterized protein OS=Trifolium subterraneum OX=3900 GN=TSUD_06290 PE=4 SV=...	[more]
A0A2P5EL16	3.6e-04	59.32	Arabinogalactan peptide OS=Trema orientale OX=63057 GN=TorRG33x02_180590 PE=4 SV...	[more]
A0A5N5HNG8	6.2e-04	59.38	Uncharacterized protein OS=Pyrus ussuriensis x Pyrus communis OX=2448454 GN=D867...	[more]

BLAST of Chy3G066120 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN62403.1	2.01e-23	95.16	hypothetical protein Csa_018595 [Cucumis sativus]	[more]
KAG6598305.1	1.70e-17	77.42	hypothetical protein SDJN03_08083, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG6585732.1	2.12e-12	78.18	CXXC motif containing zinc binding protein, partial [Cucurbita argyrosperma subs...	[more]
KGN55315.1	6.22e-09	57.81	hypothetical protein Csa_012200 [Cucumis sativus] >BAA08394.1 CRG16 [Cucumis sat...	[more]
KAG7024335.1	1.53e-08	56.25	hypothetical protein SDJN02_13149, partial [Cucurbita argyrosperma subsp. argyro...	[more]

BLAST of Chy3G066120 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G11740.1	1.6e-04	50.00	arabinogalactan protein 15	[more]

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy3G066120.1	Chy3G066120.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane