Chy3G065480 (gene) Cucumber (hystrix) v1

Overview
NameChy3G065480
Typegene
OrganismCucumis hystrix (Cucumber (hystrix) v1)
DescriptionUnknown protein
LocationchrH03: 17810287 .. 17810867 (-)
RNA-Seq ExpressionChy3G065480
SyntenyChy3G065480
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCGGTTCTTGAAGAAATCTCCTACTGCAGGCGCCGGTGTGAACCCGCGTGGTATTATAATAGCACTATTAACAGTGGTGACTTTTTTGACGTTATTGCTACTGATTTCTTCTTCACCTCCGATCCTTCATAATGTCAATGCTGTGAAGTTAAAGAAAGAAGGAGGAAGATCAGCAACCCCATCGTCTCAGAAACTCCACCACCGTAGGATGAGGCGGCCATCCTATGTTTTACAGTCAAGTAAGAGAAAAGTTCCAAATGCTTCAGACCCACTTCACAATCGTTGACTGATTAATTACTACTCCTTTTCTAGTTCCCCCTCCTTTCTTCCTTTTTGTTTACATTCACATCATCCCATCTTTCCGTATATAAACATATTTTTATAAATAATCACATTCATTTCTCACACTTCTTATTATATATATATATAATTTTATTCTTTTGGATTTTGTGATGGGTGTTAACGTGATTGAAAATGGCTGTGCTGTGTGTGCAAATGATAGATGGAAACATTATCGGAATAGTGTTCAAGATTTTGAGACTCGTGTCACTTGGGTTAGGGTTCTACAGTGAGACATGA

mRNA sequence

ATGCGGTTCTTGAAGAAATCTCCTACTGCAGGCGCCGGTGTGAACCCGCGTGGTATTATAATAGCACTATTAACAGTGGTGACTTTTTTGACGTTATTGCTACTGATTTCTTCTTCACCTCCGATCCTTCATAATGTCAATGCTGTGAAGTTAAAGAAAGAAGGAGGAAGATCAGCAACCCCATCGTCTCAGAAACTCCACCACCGTAGGATGAGGCGGCCATCCTATGTTTTACAGTCAAATGGAAACATTATCGGAATAGTGTTCAAGATTTTGAGACTCGTGTCACTTGGGTTAGGGTTCTACAGTGAGACATGA

Coding sequence (CDS)

ATGCGGTTCTTGAAGAAATCTCCTACTGCAGGCGCCGGTGTGAACCCGCGTGGTATTATAATAGCACTATTAACAGTGGTGACTTTTTTGACGTTATTGCTACTGATTTCTTCTTCACCTCCGATCCTTCATAATGTCAATGCTGTGAAGTTAAAGAAAGAAGGAGGAAGATCAGCAACCCCATCGTCTCAGAAACTCCACCACCGTAGGATGAGGCGGCCATCCTATGTTTTACAGTCAAATGGAAACATTATCGGAATAGTGTTCAAGATTTTGAGACTCGTGTCACTTGGGTTAGGGTTCTACAGTGAGACATGA

Protein sequence

MRFLKKSPTAGAGVNPRGIIIALLTVVTFLTLLLLISSSPPILHNVNAVKLKKEGGRSATPSSQKLHHRRMRRPSYVLQSNGNIIGIVFKILRLVSLGLGFYSET*
Homology
[Close]
BLAST of Chy3G065480 vs. ExPASy TrEMBL
Match: A0A0A0LL43 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G354990 PE=4 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 2.6e-31
Identity = 77/81 (95.06%), Postives = 79/81 (97.53%), Query Frame = 0 

Query: 1  MRFLKKSPTAGAGVNPRGIIIALLTVVTFLTLLLLISSSPPILHNVNAVKLKKEGGRSAT 60
          MRFLKKSPTAGAGVNPRGI+IALLTVVTFLTLLLLISSSPPI HNVNAVKLKKEGGR AT
Sbjct: 1  MRFLKKSPTAGAGVNPRGIVIALLTVVTFLTLLLLISSSPPIPHNVNAVKLKKEGGR-AT 60

Query: 61 PSSQKLHHRRMRRPSYVLQSN 82
          PSSQKLHHRRMRRPSYVLQS+
Sbjct: 61 PSSQKLHHRRMRRPSYVLQSS 80

[Close]
BLAST of Chy3G065480 vs. ExPASy TrEMBL
Match: A0A5A7UYF8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold501G00650 PE=4 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 3.3e-26
Identity = 67/81 (82.72%), Postives = 70/81 (86.42%), Query Frame = 0 

Query: 1  MRFLKKSPTAGAGVNPRGIIIALLTVVTFLTLLLLISSSPPILHNVNAVKLKKEGGRSAT 60
          MRFLKKSPTAGAGV PRGIII +LT VTFLTLLLLISSS PILHNVN VKLKKEG R+  
Sbjct: 1  MRFLKKSPTAGAGVKPRGIIITILTAVTFLTLLLLISSSSPILHNVNVVKLKKEGARATP 60

Query: 61 PSSQKLHHRRMRRPSYVLQSN 82
           SSQKLHHRRMR P YVLQS+
Sbjct: 61 SSSQKLHHRRMRPPFYVLQSS 81

[Close]
BLAST of Chy3G065480 vs. NCBI nr
Match: KGN62473.1 (hypothetical protein Csa_018580 [Cucumis sativus])

HSP 1 Score: 142 bits (357), Expect = 1.63e-41
Identity = 77/81 (95.06%), Postives = 79/81 (97.53%), Query Frame = 0 

Query: 1  MRFLKKSPTAGAGVNPRGIIIALLTVVTFLTLLLLISSSPPILHNVNAVKLKKEGGRSAT 60
          MRFLKKSPTAGAGVNPRGI+IALLTVVTFLTLLLLISSSPPI HNVNAVKLKKEGGR AT
Sbjct: 1  MRFLKKSPTAGAGVNPRGIVIALLTVVTFLTLLLLISSSPPIPHNVNAVKLKKEGGR-AT 60

Query: 61 PSSQKLHHRRMRRPSYVLQSN 81
          PSSQKLHHRRMRRPSYVLQS+
Sbjct: 61 PSSQKLHHRRMRRPSYVLQSS 80

[Close]
BLAST of Chy3G065480 vs. NCBI nr
Match: KAA0060932.1 (hypothetical protein E6C27_scaffold501G00650 [Cucumis melo var. makuwa])

HSP 1 Score: 125 bits (313), Expect = 8.51e-35
Identity = 67/81 (82.72%), Postives = 70/81 (86.42%), Query Frame = 0 

Query: 1  MRFLKKSPTAGAGVNPRGIIIALLTVVTFLTLLLLISSSPPILHNVNAVKLKKEGGRSAT 60
          MRFLKKSPTAGAGV PRGIII +LT VTFLTLLLLISSS PILHNVN VKLKKEG R+  
Sbjct: 1  MRFLKKSPTAGAGVKPRGIIITILTAVTFLTLLLLISSSSPILHNVNVVKLKKEGARATP 60

Query: 61 PSSQKLHHRRMRRPSYVLQSN 81
           SSQKLHHRRMR P YVLQS+
Sbjct: 61 SSSQKLHHRRMRPPFYVLQSS 81

The following BLAST results are available for this feature:
BLAST of Chy3G065480 vs.
Match NameE-valueIdentityDescription
BLAST of Chy3G065480 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LL432.6e-3195.06Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G354990 PE=4 SV=1[more]
A0A5A7UYF83.3e-2682.72Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
BLAST of Chy3G065480 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN62473.11.63e-4195.06hypothetical protein Csa_018580 [Cucumis sativus][more]
KAA0060932.18.51e-3582.72hypothetical protein E6C27_scaffold501G00650 [Cucumis melo var. makuwa][more]
BLAST of Chy3G065480 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Chy3G065480.1Chy3G065480.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane