Chy3G065230 (gene) Cucumber (hystrix) v1

Overview


Name	Chy3G065230
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	Chlorophyll a-b binding protein, chloroplastic
Location	chrH03: 17608116 .. 17609465 (-)
RNA-Seq Expression	Chy3G065230
Synteny	Chy3G065230

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGTTTCAATTTCAGCAGCCACTGCCTTCCATCTCCATCCTTCTTCTTCATCTTACACTCCCTTATTCAACCCTAACCAGTTCCTTCGCCTCCGATCACTTTCCCGCCGCACACTATTAATAGCTCATGCTCAATCGGAGCACCGTCAAACATGGCTTCCCGGCCTCGACCCGCCACAGCATCTCGACGGAACCCTTGCTGGGGATTTTGGATTCGACCCACTTGGGCTCGGTGAGGACCCACAAAGCTTGAAGTGGTACGTTCAAGCAGAGCTTGTTCATTGCCGCTTCGCCATGCTCGGCGTTTCTGGAGTTCTTCTCACTGATGTCTGTAACCAATTAGTCTTACATTACCACTCAATAATTGCACAAAATTGGAAACCTTAATTTAAAGATTGATGTTCTTTGTGTTGTGGCAGTTGCTTCGTGTTACAGGGATCAGTGAATTGCCAGTTTGGTATAATGCCGGTGCCGTCGAATATGGTTTTGCCAACAAACGAACTCTTTTCATTGTTCAGCTGCTTTTGATGGGGTTCTAATTCTTCCTTATCCTCCATTTCCTTTCTTTAGGTGTGGCTGTATTCATCACCTTATCTGGTTTTACTTGGCTTTGAAGGTTTGTGGAAACTAAAAGGTATATGGATTTCAAAAGCCCTGGATCTCAAGCACAAGAAGGAACTTTCTTTGGATTAGAAGCTGCCTTTGAAGGTCTCGAGCCCGGGTAATTTACATTTCTCTTGAAATTCTTAGAATGTTAGATAAAATATTGCAACGAAACAGAGTTCCGAAGCTACCTGTCAATTCTATACGAAGGCACCGTCTTACTATTCTGAGTCTCAATTTTTGTGTAACATTCAATTAAAACTCATACTTCGAAGGTAGTTTTGAAACAGTCATAAAAAGTGGAAGGAAGGAGTATGAATTTTTTTTAAAATAAAGGATCTGAAGTTTATAGGATGCTCTTTTGATCATTTTACCAACTAGAGTGCCCTAGAATGTGAACAGTTTTGACTTTGAGGGATGATTAACTTGCAGATACCCTGGGGGTCCTCTGTTGAATCCTCTTGGCATTGCTAAAGATATCAAGAATGCTCATCACTGGAAACTCAAGGAGATTAAGAATGGTTAAATTTTCCACTCACATTCTCATCAAAATTTTCGTCTATTGTTTTCCCGGATTAATCTTTGTACGTTCAAATTACAGGACGGCTTGCAATGGTAGCCATGCTTGGGATCTTTGTGCAAGCTTATGTTACTCATACAGGGCCAATAGATAACCTTGTGGAGCACCTTTCTAATCCATGGCACAAGACTATTATCCAGACACTTTCAAGCTCAAGTCCTTAA

mRNA sequence

ATGGCGGTTTCAATTTCAGCAGCCACTGCCTTCCATCTCCATCCTTCTTCTTCATCTTACACTCCCTTATTCAACCCTAACCAGTTCCTTCGCCTCCGATCACTTTCCCGCCGCACACTATTAATAGCTCATGCTCAATCGGAGCACCGTCAAACATGGCTTCCCGGCCTCGACCCGCCACAGCATCTCGACGGAACCCTTGCTGGGGATTTTGGATTCGACCCACTTGGGCTCGGTGAGGACCCACAAAGCTTGAAGTGGTACGTTCAAGCAGAGCTTGTTCATTGCCGCTTCGCCATGCTCGGCGTTTCTGGAGTTCTTCTCACTGATTTGCTTCGTGTTACAGGGATCAGTGAATTGCCAGTTTGGTATAATGCCGGTGCCGTCGAATATGGTTTTGCCAACAAACGAACTCTTTTCATTGTTCAGCTGCTTTTGATGGGGTTTGTGGAAACTAAAAGGTATATGGATTTCAAAAGCCCTGGATCTCAAGCACAAGAAGGAACTTTCTTTGGATTAGAAGCTGCCTTTGAAGGTCTCGAGCCCGGATACCCTGGGGGTCCTCTGTTGAATCCTCTTGGCATTGCTAAAGATATCAAGAATGCTCATCACTGGAAACTCAAGGAGATTAAGAATGGACGGCTTGCAATGGTAGCCATGCTTGGGATCTTTGTGCAAGCTTATGTTACTCATACAGGGCCAATAGATAACCTTGTGGAGCACCTTTCTAATCCATGGCACAAGACTATTATCCAGACACTTTCAAGCTCAAGTCCTTAA

Coding sequence (CDS)

ATGGCGGTTTCAATTTCAGCAGCCACTGCCTTCCATCTCCATCCTTCTTCTTCATCTTACACTCCCTTATTCAACCCTAACCAGTTCCTTCGCCTCCGATCACTTTCCCGCCGCACACTATTAATAGCTCATGCTCAATCGGAGCACCGTCAAACATGGCTTCCCGGCCTCGACCCGCCACAGCATCTCGACGGAACCCTTGCTGGGGATTTTGGATTCGACCCACTTGGGCTCGGTGAGGACCCACAAAGCTTGAAGTGGTACGTTCAAGCAGAGCTTGTTCATTGCCGCTTCGCCATGCTCGGCGTTTCTGGAGTTCTTCTCACTGATTTGCTTCGTGTTACAGGGATCAGTGAATTGCCAGTTTGGTATAATGCCGGTGCCGTCGAATATGGTTTTGCCAACAAACGAACTCTTTTCATTGTTCAGCTGCTTTTGATGGGGTTTGTGGAAACTAAAAGGTATATGGATTTCAAAAGCCCTGGATCTCAAGCACAAGAAGGAACTTTCTTTGGATTAGAAGCTGCCTTTGAAGGTCTCGAGCCCGGATACCCTGGGGGTCCTCTGTTGAATCCTCTTGGCATTGCTAAAGATATCAAGAATGCTCATCACTGGAAACTCAAGGAGATTAAGAATGGACGGCTTGCAATGGTAGCCATGCTTGGGATCTTTGTGCAAGCTTATGTTACTCATACAGGGCCAATAGATAACCTTGTGGAGCACCTTTCTAATCCATGGCACAAGACTATTATCCAGACACTTTCAAGCTCAAGTCCTTAA

Protein sequence

MAVSISAATAFHLHPSSSSYTPLFNPNQFLRLRSLSRRTLLIAHAQSEHRQTWLPGLDPPQHLDGTLAGDFGFDPLGLGEDPQSLKWYVQAELVHCRFAMLGVSGVLLTDLLRVTGISELPVWYNAGAVEYGFANKRTLFIVQLLLMGFVETKRYMDFKSPGSQAQEGTFFGLEAAFEGLEPGYPGGPLLNPLGIAKDIKNAHHWKLKEIKNGRLAMVAMLGIFVQAYVTHTGPIDNLVEHLSNPWHKTIIQTLSSSSP*

Homology

[Close]

BLAST of Chy3G065230 vs. ExPASy Swiss-Prot
Match: Q9C639 (Photosystem I chlorophyll a/b-binding protein 5, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=LHCA5 PE=1 SV=1)

HSP 1 Score: 365.9 bits (938), Expect = 3.7e-100
Identity = 170/210 (80.95%), Postives = 189/210 (90.00%), Query Frame = 0


Query: 50  RQTWLPGLDPPQHLDGTLAGDFGFDPLGLGEDPQSLKWYVQAELVHCRFAMLGVSGVLLT 109
           R TWLPGL+PP +LDG LAGD+GFDPLGLGEDP+SLKWYVQAELVH RFAMLGV+G+L T
Sbjct: 46  RATWLPGLNPPPYLDGNLAGDYGFDPLGLGEDPESLKWYVQAELVHSRFAMLGVAGILFT 105

Query: 110 DLLRVTGISELPVWYNAGAVEYGFANKRTLFIVQLLLMGFVETKRYMDFKSPGSQAQEGT 169
           DLLR TGI  LPVWY AGAV++ FA+ +TL +VQ LLMGF ETKRYMDF SPGSQA+EG+
Sbjct: 106 DLLRTTGIRNLPVWYEAGAVKFDFASTKTLIVVQFLLMGFAETKRYMDFVSPGSQAKEGS 165

Query: 170 -FFGLEAAFEGLEPGYPGGPLLNPLGIAKDIKNAHHWKLKEIKNGRLAMVAMLGIFVQAY 229
            FFGLEAA EGLEPGYPGGPLLNPLG+AKD++NAH WKLKEIKNGRLAM+AMLG FVQA 
Sbjct: 166 FFFGLEAALEGLEPGYPGGPLLNPLGLAKDVQNAHDWKLKEIKNGRLAMMAMLGFFVQAS 225

Query: 230 VTHTGPIDNLVEHLSNPWHKTIIQTLSSSS 259
           VTHTGPIDNLVEHLSNPWHKTIIQTL +S+
Sbjct: 226 VTHTGPIDNLVEHLSNPWHKTIIQTLFTST 255

[Close]

BLAST of Chy3G065230 vs. ExPASy Swiss-Prot
Match: Q9SQL2 (Chlorophyll a-b binding protein P4, chloroplastic OS=Pisum sativum OX=3888 GN=lhcA-P4 PE=1 SV=1)

HSP 1 Score: 209.5 bits (532), Expect = 4.4e-53
Identity = 106/207 (51.21%), Postives = 141/207 (68.12%), Query Frame = 0


Query: 53  WLPGLDPPQHLDGTLAGDFGFDPLGLGEDPQSLKWYVQAELVHCRFAMLGVSGVLLTDLL 112
           WLPGL  P +L G+L GD GFDPLGL EDP++L+W+VQAELV+ R+AMLGV+G+LL ++ 
Sbjct: 56  WLPGLASPGYLTGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVF 115

Query: 113 RVTGISELPVWYNAGAVEYGFANKRTLFIVQLLLMGFVETKRYMDFKSPGSQAQEGTF-- 172
              GI  +P WY AG  EY FA+  TLF+++ +L  +VE +R+ D K+PGS  Q+  F  
Sbjct: 116 TSIGIINVPKWYAAGKEEY-FASSSTLFVIEFILSHYVEIRRWQDIKNPGSVNQDPIFKQ 175

Query: 173 FGLEAAFEGLEPGYPGGPLLNPLGIAKDIKNAHHWKLKEIKNGRLAMVAMLGIFVQAYVT 232
           + L A     E GYPGG + NPL  A  ++     K KEI NGRLAM+A LG  +Q  VT
Sbjct: 176 YSLPAG----EVGYPGG-IFNPLNFAPTLEA----KEKEIANGRLAMLAFLGFIIQHNVT 235

Query: 233 HTGPIDNLVEHLSNPWHKTIIQTLSSS 258
             GP DNL++H+S+PWH TI+QTL  +
Sbjct: 236 GKGPFDNLLQHISDPWHNTIVQTLGGN 252

[Close]

BLAST of Chy3G065230 vs. ExPASy Swiss-Prot
Match: P27521 (Chlorophyll a-b binding protein 4, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=LHCA4 PE=1 SV=1)

HSP 1 Score: 208.8 bits (530), Expect = 7.6e-53
Identity = 104/203 (51.23%), Postives = 139/203 (68.47%), Query Frame = 0


Query: 53  WLPGLDPPQHLDGTLAGDFGFDPLGLGEDPQSLKWYVQAELVHCRFAMLGVSGVLLTDLL 112
           WLPGL  P +L G+LAGD GFDPLGL EDP++LKW+VQAELV+ R+AMLGV+G+LL ++ 
Sbjct: 57  WLPGLASPDYLTGSLAGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVF 116

Query: 113 RVTGISELPVWYNAGAVEYGFANKRTLFIVQLLLMGFVETKRYMDFKSPGSQAQEGTFFG 172
              GI  +P WY+AG  +Y FA+  TLF+++ +L  +VE +R+ D K+PGS  Q+  F  
Sbjct: 117 TKIGIINVPEWYDAGKEQY-FASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIF-- 176

Query: 173 LEAAFEGLEPGYPGGPLLNPLGIAKDIKNAHHWKLKEIKNGRLAMVAMLGIFVQAYVTHT 232
            + +    E GYPGG + NPL  A         K KE+ NGRLAM+A LG  VQ  VT  
Sbjct: 177 KQYSLPKGEVGYPGG-IFNPLNFAP----TQEAKEKELANGRLAMLAFLGFVVQHNVTGK 236

Query: 233 GPIDNLVEHLSNPWHKTIIQTLS 256
           GP +NL++HLS+PWH TI+QT +
Sbjct: 237 GPFENLLQHLSDPWHNTIVQTFN 251

[Close]

BLAST of Chy3G065230 vs. ExPASy Swiss-Prot
Match: Q9SYW8 (Photosystem I chlorophyll a/b-binding protein 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=LHCA2 PE=1 SV=1)

HSP 1 Score: 201.8 bits (512), Expect = 9.3e-51
Identity = 115/258 (44.57%), Postives = 152/258 (58.91%), Query Frame = 0


Query: 1   MAVSISAATAFHLHPSSSSYTPLFNPNQFLRLR------SLSRRTLLI-AHAQSEHRQTW 60
           MA S+ A++A      ++  +P F   + LRL+      ++SR    + A A    R  W
Sbjct: 1   MASSLCASSAI-----AAISSPSFLGGKKLRLKKKLTVPAVSRPDASVRAVAADPDRPIW 60

Query: 61  LPGLDPPQHLDGTLAGDFGFDPLGLGEDPQSLKWYVQAELVHCRFAMLGVSGVLLTDLLR 120
            PG  PP+ LDG+L GDFGFDPLGL  DP SLKW VQAE+VHCR+AMLG +G+ + + L 
Sbjct: 61  FPGSTPPEWLDGSLPGDFGFDPLGLSSDPDSLKWNVQAEIVHCRWAMLGAAGIFIPEFLT 120

Query: 121 VTGISELPVWYNAGAVEYGFANKRTLFIVQLLLMGFVETKRYMDFKSPGSQAQEGTFFGL 180
             GI   P WY AG  EY F +K TLF+V+L+L+G+ E +R+ D   PGS   +  F   
Sbjct: 121 KIGILNTPSWYTAGEQEY-FTDKTTLFVVELILIGWAEGRRWADIIKPGSVNTDPVF--P 180

Query: 181 EAAFEGLEPGYPGGPLLNPLGIAK-DIKNAHHWKLKEIKNGRLAMVAMLGIFVQAYVTHT 240
                G + GYPGG   +PLG            + KEIKNGRLAM+A++G + Q   T T
Sbjct: 181 NNKLTGTDVGYPGGLWFDPLGWGSGSPAKLKELRTKEIKNGRLAMLAVMGAWFQHIYTGT 240

Query: 241 GPIDNLVEHLSNPWHKTI 251
           GPIDNL  HL++P H TI
Sbjct: 241 GPIDNLFAHLADPGHATI 250

[Close]

BLAST of Chy3G065230 vs. ExPASy Swiss-Prot
Match: P13869 (Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida OX=4102 PE=2 SV=1)

HSP 1 Score: 199.9 bits (507), Expect = 3.5e-50
Identity = 102/221 (46.15%), Postives = 131/221 (59.28%), Query Frame = 0


Query: 36  SRRTLLIAHAQSEHRQTWLPGLDPPQHLDGTLAGDFGFDPLGLGEDPQSLKWYVQAELVH 95
           SR   + A A    R  W PG  PP+ LDG+L GDFGFDPLGLG DP+SLKW  QAELVH
Sbjct: 51  SRSVAVSAVAADPDRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPESLKWNAQAELVH 110

Query: 96  CRFAMLGVSGVLLTDLLRVTGISELPVWYNAGAVEYGFANKRTLFIVQLLLMGFVETKRY 155
            R+AMLG +G+ + + L   G+   P WY AG  EY F +  TLF+++L+L+G+ E +R+
Sbjct: 111 SRWAMLGAAGIFIPEFLTKIGVLNTPSWYTAGEQEY-FTDTTTLFVIELVLIGWAEGRRW 170

Query: 156 MDFKSPGSQAQEGTFFGLEAAFEGLEPGYPGGPLLNPLGIAK-DIKNAHHWKLKEIKNGR 215
            D   PG    +  F        G + GYPGG   +PLG            + KEIKNGR
Sbjct: 171 ADIIKPGCVNTDPIF--PNNKLTGTDVGYPGGLWFDPLGWGSGSPAKIKELRTKEIKNGR 230

Query: 216 LAMVAMLGIFVQAYVTHTGPIDNLVEHLSNPWHKTIIQTLS 256
           LAM+A++G + Q   T TGPIDNL  HL++P H TI    S
Sbjct: 231 LAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATIFAAFS 268

[Close]

BLAST of Chy3G065230 vs. ExPASy TrEMBL
Match: A0A0A0LRB4 (Chlorophyll a-b binding protein, chloroplastic OS=Cucumis sativus OX=3659 GN=Csa_2G357290 PE=3 SV=1)

HSP 1 Score: 518.8 bits (1335), Expect = 1.3e-143
Identity = 252/259 (97.30%), Postives = 254/259 (98.07%), Query Frame = 0


Query: 1   MAVSISAATAFHLHPSSSSYTPLFNPNQFLRLRSLSRRTLLIAHAQSEHRQTWLPGLDPP 60
           MAVS SAATA HLHPSSSSYTPLFNP+QFLRLRS SRRTLLIAHAQSEHRQTWLPGLDPP
Sbjct: 1   MAVSFSAATALHLHPSSSSYTPLFNPSQFLRLRSPSRRTLLIAHAQSEHRQTWLPGLDPP 60

Query: 61  QHLDGTLAGDFGFDPLGLGEDPQSLKWYVQAELVHCRFAMLGVSGVLLTDLLRVTGISEL 120
            HLDGTLAGDFGFDPLGLGEDPQSLKWYVQAELVHCRFAMLGVSGVLLTDLLRVTGISEL
Sbjct: 61  PHLDGTLAGDFGFDPLGLGEDPQSLKWYVQAELVHCRFAMLGVSGVLLTDLLRVTGISEL 120

Query: 121 PVWYNAGAVEYGFANKRTLFIVQLLLMGFVETKRYMDFKSPGSQAQEGTFFGLEAAFEGL 180
           PVWYNAGAVEYGFANKRTLFIVQLLLMGFVETKRYMDFKSPGSQAQEGTFFGLEAAF+GL
Sbjct: 121 PVWYNAGAVEYGFANKRTLFIVQLLLMGFVETKRYMDFKSPGSQAQEGTFFGLEAAFKGL 180

Query: 181 EPGYPGGPLLNPLGIAKDIKNAHHWKLKEIKNGRLAMVAMLGIFVQAYVTHTGPIDNLVE 240
           EPGYPGGPLLNPLGIAKDIKNAH WKLKEIKNGRLAMVAMLGIFVQAYVTHTGPIDNLVE
Sbjct: 181 EPGYPGGPLLNPLGIAKDIKNAHDWKLKEIKNGRLAMVAMLGIFVQAYVTHTGPIDNLVE 240

Query: 241 HLSNPWHKTIIQTLSSSSP 260
           HLSNPWHKTIIQTLSSSSP
Sbjct: 241 HLSNPWHKTIIQTLSSSSP 259

[Close]

BLAST of Chy3G065230 vs. ExPASy TrEMBL
Match: A0A5A7UY53 (Chlorophyll a-b binding protein, chloroplastic OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold501G00360 PE=3 SV=1)

HSP 1 Score: 505.0 bits (1299), Expect = 1.9e-139
Identity = 246/260 (94.62%), Postives = 252/260 (96.92%), Query Frame = 0


Query: 1   MAVSISAATAFHLHPSSSSYTPLFNP-NQFLRLRSLSRRTLLIAHAQSEHRQTWLPGLDP 60
           MAVSISAAT FHLHPSSSS+TPLFNP NQF+RLRS SR +LLIAHAQSEHRQTWLPGLDP
Sbjct: 1   MAVSISAATPFHLHPSSSSHTPLFNPTNQFVRLRSPSRPSLLIAHAQSEHRQTWLPGLDP 60

Query: 61  PQHLDGTLAGDFGFDPLGLGEDPQSLKWYVQAELVHCRFAMLGVSGVLLTDLLRVTGISE 120
           P +LDGTL GDFGFDPLGLGEDP SLKWYVQAELVHCRFAMLGV+GVLLTDLLRVTGISE
Sbjct: 61  PPYLDGTLVGDFGFDPLGLGEDPDSLKWYVQAELVHCRFAMLGVAGVLLTDLLRVTGISE 120

Query: 121 LPVWYNAGAVEYGFANKRTLFIVQLLLMGFVETKRYMDFKSPGSQAQEGTFFGLEAAFEG 180
           LPVWYNAGAVEYGFANKRTLFIVQLLLMGFVETKRYMDFKSPGSQAQEGTFFGLEAAFEG
Sbjct: 121 LPVWYNAGAVEYGFANKRTLFIVQLLLMGFVETKRYMDFKSPGSQAQEGTFFGLEAAFEG 180

Query: 181 LEPGYPGGPLLNPLGIAKDIKNAHHWKLKEIKNGRLAMVAMLGIFVQAYVTHTGPIDNLV 240
           LEPGYPGGPLLNPLGIAKD+KNAH WKLKEIKNGRLAMVAMLGIFVQAYVTHTGPIDNLV
Sbjct: 181 LEPGYPGGPLLNPLGIAKDVKNAHDWKLKEIKNGRLAMVAMLGIFVQAYVTHTGPIDNLV 240

Query: 241 EHLSNPWHKTIIQTLSSSSP 260
           EHLSNPWHKTIIQTLSSSSP
Sbjct: 241 EHLSNPWHKTIIQTLSSSSP 260

[Close]

BLAST of Chy3G065230 vs. ExPASy TrEMBL
Match: A0A1S3BBL1 (Chlorophyll a-b binding protein, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103487892 PE=3 SV=1)

HSP 1 Score: 505.0 bits (1299), Expect = 1.9e-139
Identity = 246/260 (94.62%), Postives = 252/260 (96.92%), Query Frame = 0


Query: 1   MAVSISAATAFHLHPSSSSYTPLFNP-NQFLRLRSLSRRTLLIAHAQSEHRQTWLPGLDP 60
           MAVSISAAT FHLHPSSSS+TPLFNP NQF+RLRS SR +LLIAHAQSEHRQTWLPGLDP
Sbjct: 1   MAVSISAATPFHLHPSSSSHTPLFNPTNQFVRLRSPSRPSLLIAHAQSEHRQTWLPGLDP 60

Query: 61  PQHLDGTLAGDFGFDPLGLGEDPQSLKWYVQAELVHCRFAMLGVSGVLLTDLLRVTGISE 120
           P +LDGTL GDFGFDPLGLGEDP SLKWYVQAELVHCRFAMLGV+GVLLTDLLRVTGISE
Sbjct: 61  PPYLDGTLVGDFGFDPLGLGEDPDSLKWYVQAELVHCRFAMLGVAGVLLTDLLRVTGISE 120

Query: 121 LPVWYNAGAVEYGFANKRTLFIVQLLLMGFVETKRYMDFKSPGSQAQEGTFFGLEAAFEG 180
           LPVWYNAGAVEYGFANKRTLFIVQLLLMGFVETKRYMDFKSPGSQAQEGTFFGLEAAFEG
Sbjct: 121 LPVWYNAGAVEYGFANKRTLFIVQLLLMGFVETKRYMDFKSPGSQAQEGTFFGLEAAFEG 180

Query: 181 LEPGYPGGPLLNPLGIAKDIKNAHHWKLKEIKNGRLAMVAMLGIFVQAYVTHTGPIDNLV 240
           LEPGYPGGPLLNPLGIAKD+KNAH WKLKEIKNGRLAMVAMLGIFVQAYVTHTGPIDNLV
Sbjct: 181 LEPGYPGGPLLNPLGIAKDVKNAHDWKLKEIKNGRLAMVAMLGIFVQAYVTHTGPIDNLV 240

Query: 241 EHLSNPWHKTIIQTLSSSSP 260
           EHLSNPWHKTIIQTLSSSSP
Sbjct: 241 EHLSNPWHKTIIQTLSSSSP 260

[Close]

BLAST of Chy3G065230 vs. ExPASy TrEMBL
Match: A0A6J1KNS0 (Chlorophyll a-b binding protein, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111495909 PE=3 SV=1)

HSP 1 Score: 454.1 bits (1167), Expect = 3.8e-124
Identity = 226/260 (86.92%), Postives = 236/260 (90.77%), Query Frame = 0


Query: 1   MAVSISAATAFHLHPSSSSYTPLFNPNQFLRLRSLSRRTLLI-AHAQSEHRQTWLPGLDP 60
           MAVS+SAAT FHL PSSS Y+   +  Q L LRS SRRT+   A +QS+ RQTWLPGLDP
Sbjct: 1   MAVSLSAATPFHLLPSSSLYSSSLSSKQHL-LRSPSRRTVTAQAQSQSQPRQTWLPGLDP 60

Query: 61  PQHLDGTLAGDFGFDPLGLGEDPQSLKWYVQAELVHCRFAMLGVSGVLLTDLLRVTGISE 120
           P HLDGTLAGDFGFDPLGLGEDP SLKW+VQAELVH RFAMLGVSG+LLTDLLRVTGISE
Sbjct: 61  PPHLDGTLAGDFGFDPLGLGEDPHSLKWFVQAELVHSRFAMLGVSGILLTDLLRVTGISE 120

Query: 121 LPVWYNAGAVEYGFANKRTLFIVQLLLMGFVETKRYMDFKSPGSQAQEGTFFGLEAAFEG 180
           LPVWYNAGAVEYGFANK TLFIVQLLLMGFVETKRYMDFKSPGSQAQEGTFFGLE+AFEG
Sbjct: 121 LPVWYNAGAVEYGFANKETLFIVQLLLMGFVETKRYMDFKSPGSQAQEGTFFGLESAFEG 180

Query: 181 LEPGYPGGPLLNPLGIAKDIKNAHHWKLKEIKNGRLAMVAMLGIFVQAYVTHTGPIDNLV 240
           LEPGYPGGPLLNPLG+AKDIKNAH WKLKEIKNGRLAMVAMLGIFVQAYVT TGPIDNLV
Sbjct: 181 LEPGYPGGPLLNPLGLAKDIKNAHEWKLKEIKNGRLAMVAMLGIFVQAYVTQTGPIDNLV 240

Query: 241 EHLSNPWHKTIIQTLSSSSP 260
           EHLSNPWH TII TLSSSSP
Sbjct: 241 EHLSNPWHNTIIHTLSSSSP 259

[Close]

BLAST of Chy3G065230 vs. ExPASy TrEMBL
Match: A0A6J1GH16 (Chlorophyll a-b binding protein, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111454144 PE=3 SV=1)

HSP 1 Score: 451.4 bits (1160), Expect = 2.5e-123
Identity = 223/257 (86.77%), Postives = 235/257 (91.44%), Query Frame = 0


Query: 1   MAVSISAATAFHLHPSSSSYTPLFNPNQFLRLRSLSRRTLLI-AHAQSEHRQTWLPGLDP 60
           MAVS+SAAT+FHL PSSS Y+   +P Q L LRS SRRT+   A +QS+ RQTWLPGLDP
Sbjct: 1   MAVSLSAATSFHLLPSSSFYSSSLSPKQHL-LRSPSRRTVTAQAQSQSQPRQTWLPGLDP 60

Query: 61  PQHLDGTLAGDFGFDPLGLGEDPQSLKWYVQAELVHCRFAMLGVSGVLLTDLLRVTGISE 120
           P HLDGTLAGDFGFDPLGLGEDP SLKW+VQAELVH RFAMLGVSG+LLTDLLRVTGISE
Sbjct: 61  PPHLDGTLAGDFGFDPLGLGEDPHSLKWFVQAELVHSRFAMLGVSGILLTDLLRVTGISE 120

Query: 121 LPVWYNAGAVEYGFANKRTLFIVQLLLMGFVETKRYMDFKSPGSQAQEGTFFGLEAAFEG 180
           LPVWYNAGAVEYGFANK TLFIVQLLLMGFVETKRYMDFKSPGSQAQEGTFFGLE+AFEG
Sbjct: 121 LPVWYNAGAVEYGFANKETLFIVQLLLMGFVETKRYMDFKSPGSQAQEGTFFGLESAFEG 180

Query: 181 LEPGYPGGPLLNPLGIAKDIKNAHHWKLKEIKNGRLAMVAMLGIFVQAYVTHTGPIDNLV 240
           LEPGYPGGPLLNPLG+AKDIKNAH WKLKEIKNGRLAMVAMLGIFVQAYVT TGPIDNLV
Sbjct: 181 LEPGYPGGPLLNPLGLAKDIKNAHDWKLKEIKNGRLAMVAMLGIFVQAYVTQTGPIDNLV 240

Query: 241 EHLSNPWHKTIIQTLSS 257
           EHLSNPWH T+I TLSS
Sbjct: 241 EHLSNPWHNTVIHTLSS 256

[Close]

BLAST of Chy3G065230 vs. NCBI nr
Match: XP_004150882.1 (photosystem I chlorophyll a/b-binding protein 5, chloroplastic [Cucumis sativus] >KGN62506.1 hypothetical protein Csa_022315 [Cucumis sativus])

HSP 1 Score: 520 bits (1338), Expect = 6.85e-186
Identity = 252/259 (97.30%), Postives = 254/259 (98.07%), Query Frame = 0


Query: 1   MAVSISAATAFHLHPSSSSYTPLFNPNQFLRLRSLSRRTLLIAHAQSEHRQTWLPGLDPP 60
           MAVS SAATA HLHPSSSSYTPLFNP+QFLRLRS SRRTLLIAHAQSEHRQTWLPGLDPP
Sbjct: 1   MAVSFSAATALHLHPSSSSYTPLFNPSQFLRLRSPSRRTLLIAHAQSEHRQTWLPGLDPP 60

Query: 61  QHLDGTLAGDFGFDPLGLGEDPQSLKWYVQAELVHCRFAMLGVSGVLLTDLLRVTGISEL 120
            HLDGTLAGDFGFDPLGLGEDPQSLKWYVQAELVHCRFAMLGVSGVLLTDLLRVTGISEL
Sbjct: 61  PHLDGTLAGDFGFDPLGLGEDPQSLKWYVQAELVHCRFAMLGVSGVLLTDLLRVTGISEL 120

Query: 121 PVWYNAGAVEYGFANKRTLFIVQLLLMGFVETKRYMDFKSPGSQAQEGTFFGLEAAFEGL 180
           PVWYNAGAVEYGFANKRTLFIVQLLLMGFVETKRYMDFKSPGSQAQEGTFFGLEAAF+GL
Sbjct: 121 PVWYNAGAVEYGFANKRTLFIVQLLLMGFVETKRYMDFKSPGSQAQEGTFFGLEAAFKGL 180

Query: 181 EPGYPGGPLLNPLGIAKDIKNAHHWKLKEIKNGRLAMVAMLGIFVQAYVTHTGPIDNLVE 240
           EPGYPGGPLLNPLGIAKDIKNAH WKLKEIKNGRLAMVAMLGIFVQAYVTHTGPIDNLVE
Sbjct: 181 EPGYPGGPLLNPLGIAKDIKNAHDWKLKEIKNGRLAMVAMLGIFVQAYVTHTGPIDNLVE 240

Query: 241 HLSNPWHKTIIQTLSSSSP 259
           HLSNPWHKTIIQTLSSSSP
Sbjct: 241 HLSNPWHKTIIQTLSSSSP 259

[Close]

BLAST of Chy3G065230 vs. NCBI nr
Match: XP_008444623.1 (PREDICTED: photosystem I chlorophyll a/b-binding protein 5, chloroplastic [Cucumis melo] >KAA0060903.1 photosystem I chlorophyll a/b-binding protein 5 [Cucumis melo var. makuwa])

HSP 1 Score: 506 bits (1302), Expect = 2.19e-180
Identity = 246/260 (94.62%), Postives = 252/260 (96.92%), Query Frame = 0


Query: 1   MAVSISAATAFHLHPSSSSYTPLFNP-NQFLRLRSLSRRTLLIAHAQSEHRQTWLPGLDP 60
           MAVSISAAT FHLHPSSSS+TPLFNP NQF+RLRS SR +LLIAHAQSEHRQTWLPGLDP
Sbjct: 1   MAVSISAATPFHLHPSSSSHTPLFNPTNQFVRLRSPSRPSLLIAHAQSEHRQTWLPGLDP 60

Query: 61  PQHLDGTLAGDFGFDPLGLGEDPQSLKWYVQAELVHCRFAMLGVSGVLLTDLLRVTGISE 120
           P +LDGTL GDFGFDPLGLGEDP SLKWYVQAELVHCRFAMLGV+GVLLTDLLRVTGISE
Sbjct: 61  PPYLDGTLVGDFGFDPLGLGEDPDSLKWYVQAELVHCRFAMLGVAGVLLTDLLRVTGISE 120

Query: 121 LPVWYNAGAVEYGFANKRTLFIVQLLLMGFVETKRYMDFKSPGSQAQEGTFFGLEAAFEG 180
           LPVWYNAGAVEYGFANKRTLFIVQLLLMGFVETKRYMDFKSPGSQAQEGTFFGLEAAFEG
Sbjct: 121 LPVWYNAGAVEYGFANKRTLFIVQLLLMGFVETKRYMDFKSPGSQAQEGTFFGLEAAFEG 180

Query: 181 LEPGYPGGPLLNPLGIAKDIKNAHHWKLKEIKNGRLAMVAMLGIFVQAYVTHTGPIDNLV 240
           LEPGYPGGPLLNPLGIAKD+KNAH WKLKEIKNGRLAMVAMLGIFVQAYVTHTGPIDNLV
Sbjct: 181 LEPGYPGGPLLNPLGIAKDVKNAHDWKLKEIKNGRLAMVAMLGIFVQAYVTHTGPIDNLV 240

Query: 241 EHLSNPWHKTIIQTLSSSSP 259
           EHLSNPWHKTIIQTLSSSSP
Sbjct: 241 EHLSNPWHKTIIQTLSSSSP 260

[Close]

BLAST of Chy3G065230 vs. NCBI nr
Match: XP_038886221.1 (photosystem I chlorophyll a/b-binding protein 5, chloroplastic [Benincasa hispida])

HSP 1 Score: 491 bits (1263), Expect = 2.07e-174
Identity = 244/262 (93.13%), Postives = 246/262 (93.89%), Query Frame = 0


Query: 1   MAVSISAATA----FHLHPSSSS--YTPLFNPNQFLRLRSLSRRTLLIAHAQSEHRQTWL 60
           MAVS+SAATA    FHL PSSSS  YTP FNPNQ LRLRS SRRTLLIA AQSEHRQTWL
Sbjct: 1   MAVSVSAATARATAFHLQPSSSSSSYTPSFNPNQSLRLRSPSRRTLLIAQAQSEHRQTWL 60

Query: 61  PGLDPPQHLDGTLAGDFGFDPLGLGEDPQSLKWYVQAELVHCRFAMLGVSGVLLTDLLRV 120
           PGLDPP HLDGTLAGDFGFDPLGLGEDP SLKWYVQAELVH RFAMLGVSG+LLTDLLRV
Sbjct: 61  PGLDPPPHLDGTLAGDFGFDPLGLGEDPHSLKWYVQAELVHSRFAMLGVSGILLTDLLRV 120

Query: 121 TGISELPVWYNAGAVEYGFANKRTLFIVQLLLMGFVETKRYMDFKSPGSQAQEGTFFGLE 180
           TGISELPVWYNAGAVEYGFANK TLFIVQLLLMGFVETKRYMDFKSPGSQAQEGTFFGLE
Sbjct: 121 TGISELPVWYNAGAVEYGFANKETLFIVQLLLMGFVETKRYMDFKSPGSQAQEGTFFGLE 180

Query: 181 AAFEGLEPGYPGGPLLNPLGIAKDIKNAHHWKLKEIKNGRLAMVAMLGIFVQAYVTHTGP 240
           AAFEGLEPGYPGGPLLNPLGIAKDIKNAH WKLKEIKNGRLAMVAMLGIFVQAYVTHTGP
Sbjct: 181 AAFEGLEPGYPGGPLLNPLGIAKDIKNAHEWKLKEIKNGRLAMVAMLGIFVQAYVTHTGP 240

Query: 241 IDNLVEHLSNPWHKTIIQTLSS 256
           IDNLVEHLSNPWHKTIIQTLSS
Sbjct: 241 IDNLVEHLSNPWHKTIIQTLSS 262

[Close]

BLAST of Chy3G065230 vs. NCBI nr
Match: XP_023001834.1 (photosystem I chlorophyll a/b-binding protein 5, chloroplastic [Cucurbita maxima])

HSP 1 Score: 455 bits (1170), Expect = 2.77e-160
Identity = 226/260 (86.92%), Postives = 236/260 (90.77%), Query Frame = 0


Query: 1   MAVSISAATAFHLHPSSSSYTPLFNPNQFLRLRSLSRRTLLI-AHAQSEHRQTWLPGLDP 60
           MAVS+SAAT FHL PSSS Y+   +  Q L LRS SRRT+   A +QS+ RQTWLPGLDP
Sbjct: 1   MAVSLSAATPFHLLPSSSLYSSSLSSKQHL-LRSPSRRTVTAQAQSQSQPRQTWLPGLDP 60

Query: 61  PQHLDGTLAGDFGFDPLGLGEDPQSLKWYVQAELVHCRFAMLGVSGVLLTDLLRVTGISE 120
           P HLDGTLAGDFGFDPLGLGEDP SLKW+VQAELVH RFAMLGVSG+LLTDLLRVTGISE
Sbjct: 61  PPHLDGTLAGDFGFDPLGLGEDPHSLKWFVQAELVHSRFAMLGVSGILLTDLLRVTGISE 120

Query: 121 LPVWYNAGAVEYGFANKRTLFIVQLLLMGFVETKRYMDFKSPGSQAQEGTFFGLEAAFEG 180
           LPVWYNAGAVEYGFANK TLFIVQLLLMGFVETKRYMDFKSPGSQAQEGTFFGLE+AFEG
Sbjct: 121 LPVWYNAGAVEYGFANKETLFIVQLLLMGFVETKRYMDFKSPGSQAQEGTFFGLESAFEG 180

Query: 181 LEPGYPGGPLLNPLGIAKDIKNAHHWKLKEIKNGRLAMVAMLGIFVQAYVTHTGPIDNLV 240
           LEPGYPGGPLLNPLG+AKDIKNAH WKLKEIKNGRLAMVAMLGIFVQAYVT TGPIDNLV
Sbjct: 181 LEPGYPGGPLLNPLGLAKDIKNAHEWKLKEIKNGRLAMVAMLGIFVQAYVTQTGPIDNLV 240

Query: 241 EHLSNPWHKTIIQTLSSSSP 259
           EHLSNPWH TII TLSSSSP
Sbjct: 241 EHLSNPWHNTIIHTLSSSSP 259

[Close]

BLAST of Chy3G065230 vs. NCBI nr
Match: XP_022951251.1 (photosystem I chlorophyll a/b-binding protein 5, chloroplastic [Cucurbita moschata] >KAG6585667.1 Photosystem I chlorophyll a/b-binding protein 5, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia] >KAG7020573.1 Photosystem I chlorophyll a/b-binding protein 5, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 452 bits (1163), Expect = 2.90e-159
Identity = 223/257 (86.77%), Postives = 235/257 (91.44%), Query Frame = 0


Query: 1   MAVSISAATAFHLHPSSSSYTPLFNPNQFLRLRSLSRRTLLI-AHAQSEHRQTWLPGLDP 60
           MAVS+SAAT+FHL PSSS Y+   +P Q L LRS SRRT+   A +QS+ RQTWLPGLDP
Sbjct: 1   MAVSLSAATSFHLLPSSSFYSSSLSPKQHL-LRSPSRRTVTAQAQSQSQPRQTWLPGLDP 60

Query: 61  PQHLDGTLAGDFGFDPLGLGEDPQSLKWYVQAELVHCRFAMLGVSGVLLTDLLRVTGISE 120
           P HLDGTLAGDFGFDPLGLGEDP SLKW+VQAELVH RFAMLGVSG+LLTDLLRVTGISE
Sbjct: 61  PPHLDGTLAGDFGFDPLGLGEDPHSLKWFVQAELVHSRFAMLGVSGILLTDLLRVTGISE 120

Query: 121 LPVWYNAGAVEYGFANKRTLFIVQLLLMGFVETKRYMDFKSPGSQAQEGTFFGLEAAFEG 180
           LPVWYNAGAVEYGFANK TLFIVQLLLMGFVETKRYMDFKSPGSQAQEGTFFGLE+AFEG
Sbjct: 121 LPVWYNAGAVEYGFANKETLFIVQLLLMGFVETKRYMDFKSPGSQAQEGTFFGLESAFEG 180

Query: 181 LEPGYPGGPLLNPLGIAKDIKNAHHWKLKEIKNGRLAMVAMLGIFVQAYVTHTGPIDNLV 240
           LEPGYPGGPLLNPLG+AKDIKNAH WKLKEIKNGRLAMVAMLGIFVQAYVT TGPIDNLV
Sbjct: 181 LEPGYPGGPLLNPLGLAKDIKNAHDWKLKEIKNGRLAMVAMLGIFVQAYVTQTGPIDNLV 240

Query: 241 EHLSNPWHKTIIQTLSS 256
           EHLSNPWH T+I TLSS
Sbjct: 241 EHLSNPWHNTVIHTLSS 256

[Close]

BLAST of Chy3G065230 vs. TAIR 10
Match: AT1G45474.1 (photosystem I light harvesting complex gene 5 )

HSP 1 Score: 365.9 bits (938), Expect = 2.6e-101
Identity = 170/210 (80.95%), Postives = 189/210 (90.00%), Query Frame = 0


Query: 50  RQTWLPGLDPPQHLDGTLAGDFGFDPLGLGEDPQSLKWYVQAELVHCRFAMLGVSGVLLT 109
           R TWLPGL+PP +LDG LAGD+GFDPLGLGEDP+SLKWYVQAELVH RFAMLGV+G+L T
Sbjct: 46  RATWLPGLNPPPYLDGNLAGDYGFDPLGLGEDPESLKWYVQAELVHSRFAMLGVAGILFT 105

Query: 110 DLLRVTGISELPVWYNAGAVEYGFANKRTLFIVQLLLMGFVETKRYMDFKSPGSQAQEGT 169
           DLLR TGI  LPVWY AGAV++ FA+ +TL +VQ LLMGF ETKRYMDF SPGSQA+EG+
Sbjct: 106 DLLRTTGIRNLPVWYEAGAVKFDFASTKTLIVVQFLLMGFAETKRYMDFVSPGSQAKEGS 165

Query: 170 -FFGLEAAFEGLEPGYPGGPLLNPLGIAKDIKNAHHWKLKEIKNGRLAMVAMLGIFVQAY 229
            FFGLEAA EGLEPGYPGGPLLNPLG+AKD++NAH WKLKEIKNGRLAM+AMLG FVQA 
Sbjct: 166 FFFGLEAALEGLEPGYPGGPLLNPLGLAKDVQNAHDWKLKEIKNGRLAMMAMLGFFVQAS 225

Query: 230 VTHTGPIDNLVEHLSNPWHKTIIQTLSSSS 259
           VTHTGPIDNLVEHLSNPWHKTIIQTL +S+
Sbjct: 226 VTHTGPIDNLVEHLSNPWHKTIIQTLFTST 255

[Close]

BLAST of Chy3G065230 vs. TAIR 10
Match: AT1G45474.2 (photosystem I light harvesting complex gene 5 )

HSP 1 Score: 365.9 bits (938), Expect = 2.6e-101
Identity = 170/210 (80.95%), Postives = 189/210 (90.00%), Query Frame = 0


Query: 50  RQTWLPGLDPPQHLDGTLAGDFGFDPLGLGEDPQSLKWYVQAELVHCRFAMLGVSGVLLT 109
           R TWLPGL+PP +LDG LAGD+GFDPLGLGEDP+SLKWYVQAELVH RFAMLGV+G+L T
Sbjct: 46  RATWLPGLNPPPYLDGNLAGDYGFDPLGLGEDPESLKWYVQAELVHSRFAMLGVAGILFT 105

Query: 110 DLLRVTGISELPVWYNAGAVEYGFANKRTLFIVQLLLMGFVETKRYMDFKSPGSQAQEGT 169
           DLLR TGI  LPVWY AGAV++ FA+ +TL +VQ LLMGF ETKRYMDF SPGSQA+EG+
Sbjct: 106 DLLRTTGIRNLPVWYEAGAVKFDFASTKTLIVVQFLLMGFAETKRYMDFVSPGSQAKEGS 165

Query: 170 -FFGLEAAFEGLEPGYPGGPLLNPLGIAKDIKNAHHWKLKEIKNGRLAMVAMLGIFVQAY 229
            FFGLEAA EGLEPGYPGGPLLNPLG+AKD++NAH WKLKEIKNGRLAM+AMLG FVQA 
Sbjct: 166 FFFGLEAALEGLEPGYPGGPLLNPLGLAKDVQNAHDWKLKEIKNGRLAMMAMLGFFVQAS 225

Query: 230 VTHTGPIDNLVEHLSNPWHKTIIQTLSSSS 259
           VTHTGPIDNLVEHLSNPWHKTIIQTL +S+
Sbjct: 226 VTHTGPIDNLVEHLSNPWHKTIIQTLFTST 255

[Close]

BLAST of Chy3G065230 vs. TAIR 10
Match: AT3G47470.1 (light-harvesting chlorophyll-protein complex I subunit A4 )

HSP 1 Score: 208.8 bits (530), Expect = 5.4e-54
Identity = 104/203 (51.23%), Postives = 139/203 (68.47%), Query Frame = 0


Query: 53  WLPGLDPPQHLDGTLAGDFGFDPLGLGEDPQSLKWYVQAELVHCRFAMLGVSGVLLTDLL 112
           WLPGL  P +L G+LAGD GFDPLGL EDP++LKW+VQAELV+ R+AMLGV+G+LL ++ 
Sbjct: 57  WLPGLASPDYLTGSLAGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVF 116

Query: 113 RVTGISELPVWYNAGAVEYGFANKRTLFIVQLLLMGFVETKRYMDFKSPGSQAQEGTFFG 172
              GI  +P WY+AG  +Y FA+  TLF+++ +L  +VE +R+ D K+PGS  Q+  F  
Sbjct: 117 TKIGIINVPEWYDAGKEQY-FASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIF-- 176

Query: 173 LEAAFEGLEPGYPGGPLLNPLGIAKDIKNAHHWKLKEIKNGRLAMVAMLGIFVQAYVTHT 232
            + +    E GYPGG + NPL  A         K KE+ NGRLAM+A LG  VQ  VT  
Sbjct: 177 KQYSLPKGEVGYPGG-IFNPLNFAP----TQEAKEKELANGRLAMLAFLGFVVQHNVTGK 236

Query: 233 GPIDNLVEHLSNPWHKTIIQTLS 256
           GP +NL++HLS+PWH TI+QT +
Sbjct: 237 GPFENLLQHLSDPWHNTIVQTFN 251

[Close]

BLAST of Chy3G065230 vs. TAIR 10
Match: AT3G61470.1 (photosystem I light harvesting complex gene 2 )

HSP 1 Score: 201.8 bits (512), Expect = 6.6e-52
Identity = 115/258 (44.57%), Postives = 152/258 (58.91%), Query Frame = 0


Query: 1   MAVSISAATAFHLHPSSSSYTPLFNPNQFLRLR------SLSRRTLLI-AHAQSEHRQTW 60
           MA S+ A++A      ++  +P F   + LRL+      ++SR    + A A    R  W
Sbjct: 1   MASSLCASSAI-----AAISSPSFLGGKKLRLKKKLTVPAVSRPDASVRAVAADPDRPIW 60

Query: 61  LPGLDPPQHLDGTLAGDFGFDPLGLGEDPQSLKWYVQAELVHCRFAMLGVSGVLLTDLLR 120
            PG  PP+ LDG+L GDFGFDPLGL  DP SLKW VQAE+VHCR+AMLG +G+ + + L 
Sbjct: 61  FPGSTPPEWLDGSLPGDFGFDPLGLSSDPDSLKWNVQAEIVHCRWAMLGAAGIFIPEFLT 120

Query: 121 VTGISELPVWYNAGAVEYGFANKRTLFIVQLLLMGFVETKRYMDFKSPGSQAQEGTFFGL 180
             GI   P WY AG  EY F +K TLF+V+L+L+G+ E +R+ D   PGS   +  F   
Sbjct: 121 KIGILNTPSWYTAGEQEY-FTDKTTLFVVELILIGWAEGRRWADIIKPGSVNTDPVF--P 180

Query: 181 EAAFEGLEPGYPGGPLLNPLGIAK-DIKNAHHWKLKEIKNGRLAMVAMLGIFVQAYVTHT 240
                G + GYPGG   +PLG            + KEIKNGRLAM+A++G + Q   T T
Sbjct: 181 NNKLTGTDVGYPGGLWFDPLGWGSGSPAKLKELRTKEIKNGRLAMLAVMGAWFQHIYTGT 240

Query: 241 GPIDNLVEHLSNPWHKTI 251
           GPIDNL  HL++P H TI
Sbjct: 241 GPIDNLFAHLADPGHATI 250

[Close]

BLAST of Chy3G065230 vs. TAIR 10
Match: AT1G19150.1 (photosystem I light harvesting complex gene 6 )

HSP 1 Score: 177.2 bits (448), Expect = 1.7e-44
Identity = 92/208 (44.23%), Postives = 126/208 (60.58%), Query Frame = 0


Query: 50  RQTWLPGLDPPQHLDGTLAGDFGFDPLGLGEDPQSLKWYVQAELVHCRFAMLGVSGVLLT 109
           R  W PG  PP+ LDG+L GDFGFDPLGLG DP +LKW+ QAEL+H R+AML V+G+++ 
Sbjct: 65  RPLWFPGSSPPEWLDGSLPGDFGFDPLGLGSDPDTLKWFAQAELIHSRWAMLAVTGIIIP 124

Query: 110 DLLRVTGISELPVWYNAGAVEYGFANKRTLFIVQLLLMGFVETKRYMDFKSPGSQAQEGT 169
           + L   G  E   WY+AG+ EY FA+  TLF+ Q++LMG+ E +R+ D   PGS   E  
Sbjct: 125 ECLERLGFIENFSWYDAGSREY-FADSTTLFVAQMVLMGWAEGRRWADLIKPGSVDIEPK 184

Query: 170 FFGLEAAFEGLEPGYPGGPLLNPLGIAK-DIKNAHHWKLKEIKNGRLAMVAMLGIFVQAY 229
           +          + GYPGG   + +   +   +     + KEIKNGRLAM+A LG   QA 
Sbjct: 185 Y--PHKVNPKPDVGYPGGLWFDFMMWGRGSPEPVMVLRTKEIKNGRLAMLAFLGFCFQAT 244

Query: 230 VTHTGPIDNLVEHLSNPWHKTIIQTLSS 257
            T   PI+NL+ HL++P H  +    +S
Sbjct: 245 YTSQDPIENLMAHLADPGHCNVFSAFTS 269

The following BLAST results are available for this feature:

BLAST of Chy3G065230 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9C639	3.7e-100	80.95	Photosystem I chlorophyll a/b-binding protein 5, chloroplastic OS=Arabidopsis th...	[more]
Q9SQL2	4.4e-53	51.21	Chlorophyll a-b binding protein P4, chloroplastic OS=Pisum sativum OX=3888 GN=lh...	[more]
P27521	7.6e-53	51.23	Chlorophyll a-b binding protein 4, chloroplastic OS=Arabidopsis thaliana OX=3702...	[more]
Q9SYW8	9.3e-51	44.57	Photosystem I chlorophyll a/b-binding protein 2, chloroplastic OS=Arabidopsis th...	[more]
P13869	3.5e-50	46.15	Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida OX=4102 PE=2 S...	[more]

BLAST of Chy3G065230 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LRB4	1.3e-143	97.30	Chlorophyll a-b binding protein, chloroplastic OS=Cucumis sativus OX=3659 GN=Csa...	[more]
A0A5A7UY53	1.9e-139	94.62	Chlorophyll a-b binding protein, chloroplastic OS=Cucumis melo var. makuwa OX=11...	[more]
A0A1S3BBL1	1.9e-139	94.62	Chlorophyll a-b binding protein, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103...	[more]
A0A6J1KNS0	3.8e-124	86.92	Chlorophyll a-b binding protein, chloroplastic OS=Cucurbita maxima OX=3661 GN=LO...	[more]
A0A6J1GH16	2.5e-123	86.77	Chlorophyll a-b binding protein, chloroplastic OS=Cucurbita moschata OX=3662 GN=...	[more]

BLAST of Chy3G065230 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004150882.1	6.85e-186	97.30	photosystem I chlorophyll a/b-binding protein 5, chloroplastic [Cucumis sativus]...	[more]
XP_008444623.1	2.19e-180	94.62	PREDICTED: photosystem I chlorophyll a/b-binding protein 5, chloroplastic [Cucum...	[more]
XP_038886221.1	2.07e-174	93.13	photosystem I chlorophyll a/b-binding protein 5, chloroplastic [Benincasa hispid...	[more]
XP_023001834.1	2.77e-160	86.92	photosystem I chlorophyll a/b-binding protein 5, chloroplastic [Cucurbita maxima...	[more]
XP_022951251.1	2.90e-159	86.77	photosystem I chlorophyll a/b-binding protein 5, chloroplastic [Cucurbita moscha...	[more]

BLAST of Chy3G065230 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G45474.1	2.6e-101	80.95	photosystem I light harvesting complex gene 5	[more]
AT1G45474.2	2.6e-101	80.95	photosystem I light harvesting complex gene 5	[more]
AT3G47470.1	5.4e-54	51.23	light-harvesting chlorophyll-protein complex I subunit A4	[more]
AT3G61470.1	6.6e-52	44.57	photosystem I light harvesting complex gene 2	[more]
AT1G19150.1	1.7e-44	44.23	photosystem I light harvesting complex gene 6	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR022796	Chlorophyll A-B binding protein	PFAM	PF00504	Chloroa_b-bind	coord: 59..228 e-value: 6.1E-48 score: 163.4
IPR023329	Chlorophyll a/b binding domain superfamily	GENE3D	1.10.3460.10	Chlorophyll a/b binding protein domain	coord: 50..258 e-value: 2.5E-61 score: 209.1
None	No IPR available	PANTHER	PTHR21649:SF67	PHOTOSYSTEM I CHLOROPHYLL A/B-BINDING PROTEIN 5, CHLOROPLASTIC	coord: 43..256
None	No IPR available	SUPERFAMILY	103511	Chlorophyll a-b binding protein	coord: 47..256
IPR001344	Chlorophyll A-B binding protein, plant and chromista	PANTHER	PTHR21649	CHLOROPHYLL A/B BINDING PROTEIN	coord: 43..256

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy3G065230.1	Chy3G065230.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009768	photosynthesis, light harvesting in photosystem I
biological_process	GO:0018298	protein-chromophore linkage
biological_process	GO:0009416	response to light stimulus
biological_process	GO:0009765	photosynthesis, light harvesting
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0009522	photosystem I
cellular_component	GO:0009523	photosystem II
cellular_component	GO:0016020	membrane
molecular_function	GO:0016168	chlorophyll binding
molecular_function	GO:0046872	metal ion binding