Chy3G064380 (gene) Cucumber (hystrix) v1

Overview


Name	Chy3G064380
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	Unknown protein
Location	chrH03: 17137145 .. 17137683 (-)
RNA-Seq Expression	Chy3G064380
Synteny	Chy3G064380

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGACGGGTGGTAGCTGTGGTGAACCAGAAGCCTGCACCAAATTGAAGCAGGAGCAAGGTTTTCCATTATCATCAGGACTTGTTTTCCTAGAAGTATAATAAGGTCGTTATTTGTGCTATTTTGGCTATGGCTAACATCCAGTTGTAACCCATCTACTATGTTTTGTACTGCAGCATGAACTCTAATAAATGCAGCGCCTTGGAGTTGAAATACCAACCTGCATCAAGGAGAATGACCTGTGACTATCTACTATTGAAGGATGTTAGAGCACCTTCAATTTATGGAATCGAACCAGAGGGCACAAACAACAAGAATCAGTCCAGAAATCTCTTTAGGGTTGTTGCTTCGATCTTTCTTTATCTTCTCATGAAGGTTTCTCATGCATGCCGCTTCGCCTAGTGTTATCACGTGGTTCCAAAGTGCTCTTCCAGCTGCCATTCGACACTCCAAGCGTTGGAGGTAATCCCATATTTAGCCTCAAGTCTAGTATGGACTTCAAGTACACTGTCGTCCAACAACGCATCTGGAAGCTTTAG

mRNA sequence

ATGGGACGGGTGGTAGCTGTGGTGAACCAGAAGCCTGCACCAAATTGAAGCAGGAGCAAGGTTTTCCATTATCATCAGGACTTGTTTTCCTAGAAGTATAATAAGCATGAACTCTAATAAATGCAGCGCCTTGGAGTTGAAATACCAACCTGCATCAAGGAGAATGACCTGTGACTATCTACTATTGAAGGATGTTAGAGCACCTTCAATTTATGGAATCGAACCAGAGGGCACAAACAACAAGAATCAGTCCAGAAATCTCTTTAGGGTTGTTGCTTCGATCTTTCTTTATCTTCTCATGAAGGTTTCTCATGCATGCCGCTTCGCCTAGTGTTATCACGTGGTTCCAAAGTGCTCTTCCAGCTGCCATTCGACACTCCAAGCGTTGGAGGTAATCCCATATTTAGCCTCAAGTCTAGTATGGACTTCAAGTACACTGTCGTCCAACAACGCATCTGGAAGCTTTAG

Coding sequence (CDS)

ATGGGACGGGTGGTAGCTGTGGTGAACCAGAAGCCTGCACCAAATTGAAGCAGGAGCAAGGTTTTCCATTATCATCAGGACTTGTTTTCCTAGAAGTATAATAAGCATGAACTCTAATAAATGCAGCGCCTTGGAGTTGAAATACCAACCTGCATCAAGGAGAATGACCTGTGACTATCTACTATTGAAGGATGTTAGAGCACCTTCAATTTATGGAATCGAACCAGAGGGCACAAACAACAAGAATCAGTCCAGAAATCTCTTTAGGGTTGTTGCTTCGATCTTTCTTTATCTTCTCATGAAGGTTTCTCATGCATGCCGCTTCGCCTAGTGTTATCACGTGGTTCCAAAGTGCTCTTCCAGCTGCCATTCGACACTCCAAGCGTTGGAGGTAATCCCATATTTAGCCTCAAGTCTAGTATGGACTTCAAGTACACTGTCGTCCAACAACGCATCTGGAAGCTTTAG

Protein sequence

MGRVVAVVNQKPAPN*SRSKVFHYHQDLFS*KYNKHEL**MQRLGVEIPTCIKENDL*LSTIEGC*STFNLWNRTRGHKQQESVQKSL*GCCFDLSLSSHEGFSCMPLRLVLSRGSKVLFQLPFDTPSVGGNPIFSLKSSMDFKYTVVQQRIWKL*

Homology

[Close]

BLAST of Chy3G064380 vs. ExPASy TrEMBL
Match: A0A0A0LLG1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G361685 PE=4 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 6.0e-32
Identity = 80/155 (51.61%), Postives = 92/155 (59.35%), Query Frame = 0


Query: 1   MGRVVAVVNQKPAPN*SRSKVFHYHQDLFS*KYNKHEL**MQRLGVEIPTCIKENDL*LS 60
           MGRVVA VNQKPAPN SRSKVFHY +  F+             L ++     +       
Sbjct: 1   MGRVVAEVNQKPAPNSSRSKVFHYIRTCFARSITSMNSNKCGALELKYQPSSRRMTCDYL 60

Query: 61  TIEGC*STFNLWNRTRGHKQQESVQKSL*GCCFDLSLSSHEGFSCMPLRLVLSRGSKVLF 120
            ++   +         G   +   +           L+SHEGFS MPLRLVLS GSKVLF
Sbjct: 61  LLKNVRAPSIYGIEPEGTNNKNQCRNLFRVVASIFFLASHEGFSSMPLRLVLSHGSKVLF 120

Query: 121 QLPFDTPSVGGNPIFSLKSSMDFKYTVVQQRIWKL 156
           QLPFDTPSVGGNP+FSLKSSMDFKYTVVQQRIWKL
Sbjct: 121 QLPFDTPSVGGNPVFSLKSSMDFKYTVVQQRIWKL 155

[Close]

BLAST of Chy3G064380 vs. NCBI nr
Match: KGN62603.1 (hypothetical protein Csa_022280 [Cucumis sativus])

HSP 1 Score: 141 bits (356), Expect = 1.00e-39
Identity = 80/155 (51.61%), Postives = 92/155 (59.35%), Query Frame = 0


Query: 1   MGRVVAVVNQKPAPN*SRSKVFHYHQDLFS*KYNKHEL**MQRLGVEIPTCIKENDL*LS 60
           MGRVVA VNQKPAPN SRSKVFHY +  F+             L ++     +       
Sbjct: 1   MGRVVAEVNQKPAPNSSRSKVFHYIRTCFARSITSMNSNKCGALELKYQPSSRRMTCDYL 60

Query: 61  TIEGC*STFNLWNRTRGHKQQESVQKSL*GCCFDLSLSSHEGFSCMPLRLVLSRGSKVLF 120
            ++   +         G   +   +           L+SHEGFS MPLRLVLS GSKVLF
Sbjct: 61  LLKNVRAPSIYGIEPEGTNNKNQCRNLFRVVASIFFLASHEGFSSMPLRLVLSHGSKVLF 120

Query: 121 QLPFDTPSVGGNPIFSLKSSMDFKYTVVQQRIWKL 155
           QLPFDTPSVGGNP+FSLKSSMDFKYTVVQQRIWKL
Sbjct: 121 QLPFDTPSVGGNPVFSLKSSMDFKYTVVQQRIWKL 155

The following BLAST results are available for this feature:

BLAST of Chy3G064380 vs.


Match Name	E-value	Identity	Description

BLAST of Chy3G064380 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LLG1	6.0e-32	51.61	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G361685 PE=4 SV=1	[more]

BLAST of Chy3G064380 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN62603.1	1.00e-39	51.61	hypothetical protein Csa_022280 [Cucumis sativus]	[more]

BLAST of Chy3G064380 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy3G064380.1	Chy3G064380.1	mRNA