Chy3G064380 (gene) Cucumber (hystrix) v1

Overview
NameChy3G064380
Typegene
OrganismCucumis hystrix (Cucumber (hystrix) v1)
DescriptionUnknown protein
LocationchrH03: 17137145 .. 17137683 (-)
RNA-Seq ExpressionChy3G064380
SyntenyChy3G064380
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGACGGGTGGTAGCTGTGGTGAACCAGAAGCCTGCACCAAATTGAAGCAGGAGCAAGGTTTTCCATTATCATCAGGACTTGTTTTCCTAGAAGTATAATAAGGTCGTTATTTGTGCTATTTTGGCTATGGCTAACATCCAGTTGTAACCCATCTACTATGTTTTGTACTGCAGCATGAACTCTAATAAATGCAGCGCCTTGGAGTTGAAATACCAACCTGCATCAAGGAGAATGACCTGTGACTATCTACTATTGAAGGATGTTAGAGCACCTTCAATTTATGGAATCGAACCAGAGGGCACAAACAACAAGAATCAGTCCAGAAATCTCTTTAGGGTTGTTGCTTCGATCTTTCTTTATCTTCTCATGAAGGTTTCTCATGCATGCCGCTTCGCCTAGTGTTATCACGTGGTTCCAAAGTGCTCTTCCAGCTGCCATTCGACACTCCAAGCGTTGGAGGTAATCCCATATTTAGCCTCAAGTCTAGTATGGACTTCAAGTACACTGTCGTCCAACAACGCATCTGGAAGCTTTAG

mRNA sequence

ATGGGACGGGTGGTAGCTGTGGTGAACCAGAAGCCTGCACCAAATTGAAGCAGGAGCAAGGTTTTCCATTATCATCAGGACTTGTTTTCCTAGAAGTATAATAAGCATGAACTCTAATAAATGCAGCGCCTTGGAGTTGAAATACCAACCTGCATCAAGGAGAATGACCTGTGACTATCTACTATTGAAGGATGTTAGAGCACCTTCAATTTATGGAATCGAACCAGAGGGCACAAACAACAAGAATCAGTCCAGAAATCTCTTTAGGGTTGTTGCTTCGATCTTTCTTTATCTTCTCATGAAGGTTTCTCATGCATGCCGCTTCGCCTAGTGTTATCACGTGGTTCCAAAGTGCTCTTCCAGCTGCCATTCGACACTCCAAGCGTTGGAGGTAATCCCATATTTAGCCTCAAGTCTAGTATGGACTTCAAGTACACTGTCGTCCAACAACGCATCTGGAAGCTTTAG

Coding sequence (CDS)

ATGGGACGGGTGGTAGCTGTGGTGAACCAGAAGCCTGCACCAAATTGAAGCAGGAGCAAGGTTTTCCATTATCATCAGGACTTGTTTTCCTAGAAGTATAATAAGCATGAACTCTAATAAATGCAGCGCCTTGGAGTTGAAATACCAACCTGCATCAAGGAGAATGACCTGTGACTATCTACTATTGAAGGATGTTAGAGCACCTTCAATTTATGGAATCGAACCAGAGGGCACAAACAACAAGAATCAGTCCAGAAATCTCTTTAGGGTTGTTGCTTCGATCTTTCTTTATCTTCTCATGAAGGTTTCTCATGCATGCCGCTTCGCCTAGTGTTATCACGTGGTTCCAAAGTGCTCTTCCAGCTGCCATTCGACACTCCAAGCGTTGGAGGTAATCCCATATTTAGCCTCAAGTCTAGTATGGACTTCAAGTACACTGTCGTCCAACAACGCATCTGGAAGCTTTAG

Protein sequence

MGRVVAVVNQKPAPN*SRSKVFHYHQDLFS*KYNKHEL**MQRLGVEIPTCIKENDL*LSTIEGC*STFNLWNRTRGHKQQESVQKSL*GCCFDLSLSSHEGFSCMPLRLVLSRGSKVLFQLPFDTPSVGGNPIFSLKSSMDFKYTVVQQRIWKL*
Homology
[Close]
BLAST of Chy3G064380 vs. ExPASy TrEMBL
Match: A0A0A0LLG1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G361685 PE=4 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 6.0e-32
Identity = 80/155 (51.61%), Postives = 92/155 (59.35%), Query Frame = 0 

Query: 1   MGRVVAVVNQKPAPN*SRSKVFHYHQDLFS*KYNKHEL**MQRLGVEIPTCIKENDL*LS 60
           MGRVVA VNQKPAPN SRSKVFHY +  F+             L ++     +       
Sbjct: 1   MGRVVAEVNQKPAPNSSRSKVFHYIRTCFARSITSMNSNKCGALELKYQPSSRRMTCDYL 60

Query: 61  TIEGC*STFNLWNRTRGHKQQESVQKSL*GCCFDLSLSSHEGFSCMPLRLVLSRGSKVLF 120
            ++   +         G   +   +           L+SHEGFS MPLRLVLS GSKVLF
Sbjct: 61  LLKNVRAPSIYGIEPEGTNNKNQCRNLFRVVASIFFLASHEGFSSMPLRLVLSHGSKVLF 120

Query: 121 QLPFDTPSVGGNPIFSLKSSMDFKYTVVQQRIWKL 156
           QLPFDTPSVGGNP+FSLKSSMDFKYTVVQQRIWKL
Sbjct: 121 QLPFDTPSVGGNPVFSLKSSMDFKYTVVQQRIWKL 155

[Close]
BLAST of Chy3G064380 vs. NCBI nr
Match: KGN62603.1 (hypothetical protein Csa_022280 [Cucumis sativus])

HSP 1 Score: 141 bits (356), Expect = 1.00e-39
Identity = 80/155 (51.61%), Postives = 92/155 (59.35%), Query Frame = 0 

Query: 1   MGRVVAVVNQKPAPN*SRSKVFHYHQDLFS*KYNKHEL**MQRLGVEIPTCIKENDL*LS 60
           MGRVVA VNQKPAPN SRSKVFHY +  F+             L ++     +       
Sbjct: 1   MGRVVAEVNQKPAPNSSRSKVFHYIRTCFARSITSMNSNKCGALELKYQPSSRRMTCDYL 60

Query: 61  TIEGC*STFNLWNRTRGHKQQESVQKSL*GCCFDLSLSSHEGFSCMPLRLVLSRGSKVLF 120
            ++   +         G   +   +           L+SHEGFS MPLRLVLS GSKVLF
Sbjct: 61  LLKNVRAPSIYGIEPEGTNNKNQCRNLFRVVASIFFLASHEGFSSMPLRLVLSHGSKVLF 120

Query: 121 QLPFDTPSVGGNPIFSLKSSMDFKYTVVQQRIWKL 155
           QLPFDTPSVGGNP+FSLKSSMDFKYTVVQQRIWKL
Sbjct: 121 QLPFDTPSVGGNPVFSLKSSMDFKYTVVQQRIWKL 155

The following BLAST results are available for this feature:
BLAST of Chy3G064380 vs.
Match NameE-valueIdentityDescription
BLAST of Chy3G064380 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LLG16.0e-3251.61Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G361685 PE=4 SV=1[more]
BLAST of Chy3G064380 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN62603.11.00e-3951.61hypothetical protein Csa_022280 [Cucumis sativus][more]
BLAST of Chy3G064380 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Chy3G064380.1Chy3G064380.1mRNA