Chy3G063000 (gene) Cucumber (hystrix) v1

Overview


Name	Chy3G063000
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	CHCH domain-containing protein
Location	chrH03: 16202854 .. 16205100 (-)
RNA-Seq Expression	Chy3G063000
Synteny	Chy3G063000

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCTCGTCGTAGCTCCGGTGGTTAGTATTTCGTACATTTTCCCTTCATATCTTTTTATGTGACTAGTTATTCCTTTTTTCAGATTCATTTCATCCGGACAGTTTTTGTTTCCTGTTCTTTTTTCCTCGTTTATCTACCTACTTATATTTCTGGCGATGGTTTTGTATGAATAGTTGGATTGGGTTTCTGGCTTAGGGAAGTTCTTGATTTTTTGGATCTGATTTTACGACAAGATTGTTTACAATTTTCTTGTGGGGGGAAGGGACAAAACTAGGGTTTGAAGTTGAAGCGTTTACATGCTTTAGGTTTTAGAAATTTATGTGATTGCGATAGTTAATCTCTCTGATGTATGTGGTAAGTGGTTGGCCTTCGCTTATTTTGCAGGACGATCTGCTTCCCGTCCCGCCCCTCGCGCTCCACTTCGCAATCCTCCGGCGCCAGGTAAATTCCGACGATTTTTATATGATTTAGTTTAGTTGCCTATTTTCAAGACCTCATCTGGGGAGCAATGTTGAATTTGTCTGGTAGCCGTTATGAGGGCCTGTGTTTTAGTACGTAGATATGCTTATCCTCTTCATGTCCATAGTGACTGCATTCCAGTTCGGCCTCTTTGTATATGTGCCTTTACCAAGGCATCTTTCTGATGTCATTAGAAATATCTTTATTTCTTTTAGCTGAAGATCTTTGTTTGATAAGTCACAAGTTATGGCGTACTAAAGGAATTTGGTAACGAGGATTCGGTGGAAAGAGTTGAATTCATTCCAATTTAAGTTATATTTACAAACCACGAAACAGTTGTAGTTGCCAACTAAAGATTAGGTTCGAGCTCAACTATTTATGAACATGTCTTATGTAATAAATGTTGTATTATTATTATTATTATTCCATCCTATTTACCATGTTATATATCATCATTTGACCAAAATCAAATGAGTTTCTAGCCTGAAATTCTATATATCTGAATTGGTTTTGGACTTAAAAATTTCAAATTCAAAATTAGGCTACACAAAACCAATTAGCTGTTATAAAAACAAATTATATATAGCTATGATGTTATGCTAATGTACATCTTTTTATAACTATTTTACCTTCTTCTCCTTTGACCAATGGGAGGATTGTGTTGCAATTTCTTTGTTTTGGGACATTGCTCTCTTTTGTAAATTTGATAGGCCAGTAAAATTGGTTTACTATTTTTCCTTAAAAAAATTGTTTACTATGGGATACATTTGGTTCGGTGAATTGAAAGGTATACCATGAAAATTTTCCAATATCAGTAAAGAACATGAAAACATTGAACAATTCTAGATTGCATCCTAAACAGGCCTTAAATAACTTGAAAAACTAAAGAGCTAGAAAACTTGAGTAGTGGGGTGTGGTTATCCAATGAGAAGATGACAGGCTACACTATTACTATATGTAAAAATGATAGTTGCACCTGGACTTCAACCACCTTCCACTTTAATTTTAATTTATTCTTGCTCTTTCTTGGGAGGTATTTATTTTACCAAAATTCTTCTGTATATTGCTAATAACTGATGACATAGATTCATGGTTATTAGCTGCTGTATAGCTGGAATCTTTTGATTGCGAATGTTTATGCTGTTTCCTTCAATGTTCAACCCAATTTTTACTTATATTTTTGAAAGTTTATTCTTAGCAATATTGTTTTTGGTGCTAAACTTATCTTAACTTTTGCAGCTAGTCCCGCTCCTCCACCTGCACCTGTACAAGGTGGTGGTGGTGGTTCTATGCTTGGAGGTCTTGGTGCCACTATTGCTCAAGGTGAGGGAAGCACACATCCTTTCTGTTTCTACAACTAGTCATAATGCCATCGTAACTGTGTCTTTTTTTGTGCTGATGTGCAGGTATGGCCTTTGGTACCGGAAGTGCAGTGGCTCACAGGGCTGTCGATGCCGTAATGGGTCCTCGAACCATCCAGCATGAGACCATTGATTCATCAGCCTCCTCAGCACCTTCTGTTGCAAGCAATTCTGGTGGTTCTGATGCTTGTACTGTTCAGTCAAAATCCTTTCAAGATGTAAGTTCCTTGTTGCTTTATTGTTATTTACCATGACTTTTGGAGGCTGAAGCCTTTATTTGCCTCATCTTTATACTGGGGCAATTTTAACCTTTTCTTTCTTTGCAGTGCCTGAACCACTATGGAAGTGACATCAGCAAGTGCCAATTCTACTTGGATATGTTGCAGGAATGCCGCAGGAGCTCAGGTTCTGTTTTGGGTGCTTAA

mRNA sequence

ATGCCTCGTCGTAGCTCCGGTGGACGATCTGCTTCCCGTCCCGCCCCTCGCGCTCCACTTCGCAATCCTCCGGCGCCAGCTAGTCCCGCTCCTCCACCTGCACCTGTACAAGGTGGTGGTGGTGGTTCTATGCTTGGAGGTCTTGGTGCCACTATTGCTCAAGGTATGGCCTTTGGTACCGGAAGTGCAGTGGCTCACAGGGCTGTCGATGCCGTAATGGGTCCTCGAACCATCCAGCATGAGACCATTGATTCATCAGCCTCCTCAGCACCTTCTGTTGCAAGCAATTCTGGTGGTTCTGATGCTTGTACTGTTCAGTCAAAATCCTTTCAAGATTGCCTGAACCACTATGGAAGTGACATCAGCAAGTGCCAATTCTACTTGGATATGTTGCAGGAATGCCGCAGGAGCTCAGGTTCTGTTTTGGGTGCTTAA

Coding sequence (CDS)

ATGCCTCGTCGTAGCTCCGGTGGACGATCTGCTTCCCGTCCCGCCCCTCGCGCTCCACTTCGCAATCCTCCGGCGCCAGCTAGTCCCGCTCCTCCACCTGCACCTGTACAAGGTGGTGGTGGTGGTTCTATGCTTGGAGGTCTTGGTGCCACTATTGCTCAAGGTATGGCCTTTGGTACCGGAAGTGCAGTGGCTCACAGGGCTGTCGATGCCGTAATGGGTCCTCGAACCATCCAGCATGAGACCATTGATTCATCAGCCTCCTCAGCACCTTCTGTTGCAAGCAATTCTGGTGGTTCTGATGCTTGTACTGTTCAGTCAAAATCCTTTCAAGATTGCCTGAACCACTATGGAAGTGACATCAGCAAGTGCCAATTCTACTTGGATATGTTGCAGGAATGCCGCAGGAGCTCAGGTTCTGTTTTGGGTGCTTAA

Protein sequence

MPRRSSGGRSASRPAPRAPLRNPPAPASPAPPPAPVQGGGGGSMLGGLGATIAQGMAFGTGSAVAHRAVDAVMGPRTIQHETIDSSASSAPSVASNSGGSDACTVQSKSFQDCLNHYGSDISKCQFYLDMLQECRRSSGSVLGA*

Homology

[Close]

BLAST of Chy3G063000 vs. ExPASy TrEMBL
Match: A0A0A0LNY2 (CHCH domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G370390 PE=4 SV=1)

HSP 1 Score: 268.5 bits (685), Expect = 1.7e-68
Identity = 142/144 (98.61%), Postives = 143/144 (99.31%), Query Frame = 0


Query: 1   MPRRSSGGRSASRPAPRAPLRNPPAPASPAPPPAPVQGGGGGSMLGGLGATIAQGMAFGT 60
           MPRRSSGGRSASRPAPRAPLRNPPAPASPAPPPAPVQGGGGGSMLGGLGATIAQGMAFGT
Sbjct: 1   MPRRSSGGRSASRPAPRAPLRNPPAPASPAPPPAPVQGGGGGSMLGGLGATIAQGMAFGT 60

Query: 61  GSAVAHRAVDAVMGPRTIQHETIDSSASSAPSVASNSGGSDACTVQSKSFQDCLNHYGSD 120
           GSAVAHRAVDAVMGPRTIQHET+DSSASSAPSVASNSGGSDAC VQSKSFQDCLNHYGSD
Sbjct: 61  GSAVAHRAVDAVMGPRTIQHETVDSSASSAPSVASNSGGSDACNVQSKSFQDCLNHYGSD 120

Query: 121 ISKCQFYLDMLQECRRSSGSVLGA 145
           ISKCQFYLDMLQECRRSSGSVLGA
Sbjct: 121 ISKCQFYLDMLQECRRSSGSVLGA 144

[Close]

BLAST of Chy3G063000 vs. ExPASy TrEMBL
Match: A0A5A7VFK2 (Coiled-coil-helix-coiled-coil-helix domain-containing protein 10 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold82G004400 PE=4 SV=1)

HSP 1 Score: 256.1 bits (653), Expect = 8.5e-65
Identity = 137/144 (95.14%), Postives = 138/144 (95.83%), Query Frame = 0


Query: 1   MPRRSSGGRSASRPAPRAPLRNPPAPASPAPPPAPVQGGGGGSMLGGLGATIAQGMAFGT 60
           MPRRSSGGRSA RPA RAP RNPPAP + APPPAPVQGGGGGSMLGGLGATIAQGMAFGT
Sbjct: 1   MPRRSSGGRSAPRPAARAPARNPPAPVNSAPPPAPVQGGGGGSMLGGLGATIAQGMAFGT 60

Query: 61  GSAVAHRAVDAVMGPRTIQHETIDSSASSAPSVASNSGGSDACTVQSKSFQDCLNHYGSD 120
           GSAVAHRAVDAVMGPRTIQHETIDSSASSAPSVASNSGGSDAC VQSKSFQDCLNHYGSD
Sbjct: 61  GSAVAHRAVDAVMGPRTIQHETIDSSASSAPSVASNSGGSDACNVQSKSFQDCLNHYGSD 120

Query: 121 ISKCQFYLDMLQECRRSSGSVLGA 145
           ISKCQFYLDMLQECRRSSGSVLGA
Sbjct: 121 ISKCQFYLDMLQECRRSSGSVLGA 144

[Close]

BLAST of Chy3G063000 vs. ExPASy TrEMBL
Match: A0A1S3BAZ1 (uncharacterized protein C6C3.02c-like OS=Cucumis melo OX=3656 GN=LOC103488112 PE=4 SV=1)

HSP 1 Score: 255.0 bits (650), Expect = 1.9e-64
Identity = 136/144 (94.44%), Postives = 138/144 (95.83%), Query Frame = 0


Query: 1   MPRRSSGGRSASRPAPRAPLRNPPAPASPAPPPAPVQGGGGGSMLGGLGATIAQGMAFGT 60
           MPRRSSGGRSA RPA RAP RNPPAP + APPPAPVQGGGGGSMLGGLGATIAQGMAFGT
Sbjct: 1   MPRRSSGGRSAPRPAARAPARNPPAPVNSAPPPAPVQGGGGGSMLGGLGATIAQGMAFGT 60

Query: 61  GSAVAHRAVDAVMGPRTIQHETIDSSASSAPSVASNSGGSDACTVQSKSFQDCLNHYGSD 120
           GSAVAHRAVDAVMGPRTIQHETIDSSASSAPSVA+NSGGSDAC VQSKSFQDCLNHYGSD
Sbjct: 61  GSAVAHRAVDAVMGPRTIQHETIDSSASSAPSVANNSGGSDACNVQSKSFQDCLNHYGSD 120

Query: 121 ISKCQFYLDMLQECRRSSGSVLGA 145
           ISKCQFYLDMLQECRRSSGSVLGA
Sbjct: 121 ISKCQFYLDMLQECRRSSGSVLGA 144

[Close]

BLAST of Chy3G063000 vs. ExPASy TrEMBL
Match: A0A6J1HDK4 (coiled-coil-helix-coiled-coil-helix domain-containing protein 10, mitochondrial OS=Cucurbita moschata OX=3662 GN=LOC111462950 PE=4 SV=1)

HSP 1 Score: 246.5 bits (628), Expect = 6.8e-62
Identity = 134/145 (92.41%), Postives = 136/145 (93.79%), Query Frame = 0


Query: 1   MPRRSSGGRSASRPAPRAPLRNPPAPASPAPPPAPVQGGGGGSMLGGLGATIAQGMAFGT 60
           MPRRSSGGRSASRPAPRAP RN PAPA  APPPAPVQGGGGGSMLGGLGATIAQGMAFGT
Sbjct: 1   MPRRSSGGRSASRPAPRAPPRNTPAPAHSAPPPAPVQGGGGGSMLGGLGATIAQGMAFGT 60

Query: 61  GSAVAHRAVDAVMGPRTIQHETIDSSA-SSAPSVASNSGGSDACTVQSKSFQDCLNHYGS 120
           GSAVAHRAVDAVMGPR IQHET+DSS  SSAPSVASN GGSDAC VQSKSFQDCLNHYGS
Sbjct: 61  GSAVAHRAVDAVMGPRVIQHETVDSSTPSSAPSVASNPGGSDACNVQSKSFQDCLNHYGS 120

Query: 121 DISKCQFYLDMLQECRRSSGSVLGA 145
           DISKCQFYLDMLQECR+SSGSVLGA
Sbjct: 121 DISKCQFYLDMLQECRKSSGSVLGA 145

[Close]

BLAST of Chy3G063000 vs. ExPASy TrEMBL
Match: A0A6J1K966 (coiled-coil-helix-coiled-coil-helix domain-containing protein 10, mitochondrial-like OS=Cucurbita maxima OX=3661 GN=LOC111492237 PE=4 SV=1)

HSP 1 Score: 245.0 bits (624), Expect = 2.0e-61
Identity = 133/145 (91.72%), Postives = 136/145 (93.79%), Query Frame = 0


Query: 1   MPRRSSGGRSASRPAPRAPLRNPPAPASPAPPPAPVQGGGGGSMLGGLGATIAQGMAFGT 60
           MPRRSSGGRSASRPAPRAP RN PAPA+ APPPAPVQGGGGGSMLGGLGATIAQGMAFGT
Sbjct: 1   MPRRSSGGRSASRPAPRAPPRNTPAPANSAPPPAPVQGGGGGSMLGGLGATIAQGMAFGT 60

Query: 61  GSAVAHRAVDAVMGPRTIQHETIDSSA-SSAPSVASNSGGSDACTVQSKSFQDCLNHYGS 120
           GSAVAHRAVDAVMGPR IQHET+DSS  SSAPSVA N GGSDAC VQSKSFQDCLNHYGS
Sbjct: 61  GSAVAHRAVDAVMGPRVIQHETVDSSTPSSAPSVAINPGGSDACNVQSKSFQDCLNHYGS 120

Query: 121 DISKCQFYLDMLQECRRSSGSVLGA 145
           DISKCQFYLDMLQECR+SSGSVLGA
Sbjct: 121 DISKCQFYLDMLQECRKSSGSVLGA 145

[Close]

BLAST of Chy3G063000 vs. NCBI nr
Match: XP_011649682.1 (hemiasterlin resistant protein 1 [Cucumis sativus] >KGN62739.1 hypothetical protein Csa_022490 [Cucumis sativus])

HSP 1 Score: 265 bits (678), Expect = 4.56e-89
Identity = 142/144 (98.61%), Postives = 143/144 (99.31%), Query Frame = 0


Query: 1   MPRRSSGGRSASRPAPRAPLRNPPAPASPAPPPAPVQGGGGGSMLGGLGATIAQGMAFGT 60
           MPRRSSGGRSASRPAPRAPLRNPPAPASPAPPPAPVQGGGGGSMLGGLGATIAQGMAFGT
Sbjct: 1   MPRRSSGGRSASRPAPRAPLRNPPAPASPAPPPAPVQGGGGGSMLGGLGATIAQGMAFGT 60

Query: 61  GSAVAHRAVDAVMGPRTIQHETIDSSASSAPSVASNSGGSDACTVQSKSFQDCLNHYGSD 120
           GSAVAHRAVDAVMGPRTIQHET+DSSASSAPSVASNSGGSDAC VQSKSFQDCLNHYGSD
Sbjct: 61  GSAVAHRAVDAVMGPRTIQHETVDSSASSAPSVASNSGGSDACNVQSKSFQDCLNHYGSD 120

Query: 121 ISKCQFYLDMLQECRRSSGSVLGA 144
           ISKCQFYLDMLQECRRSSGSVLGA
Sbjct: 121 ISKCQFYLDMLQECRRSSGSVLGA 144

[Close]

BLAST of Chy3G063000 vs. NCBI nr
Match: XP_038886373.1 (coiled-coil-helix-coiled-coil-helix domain-containing protein 10, mitochondrial-like [Benincasa hispida])

HSP 1 Score: 260 bits (664), Expect = 6.22e-87
Identity = 140/144 (97.22%), Postives = 141/144 (97.92%), Query Frame = 0


Query: 1   MPRRSSGGRSASRPAPRAPLRNPPAPASPAPPPAPVQGGGGGSMLGGLGATIAQGMAFGT 60
           MPRRSSGGRSASRPAPRAPLRNPPAPAS APPPAPVQGGGGGSMLGGLGATIAQGMAFGT
Sbjct: 1   MPRRSSGGRSASRPAPRAPLRNPPAPASSAPPPAPVQGGGGGSMLGGLGATIAQGMAFGT 60

Query: 61  GSAVAHRAVDAVMGPRTIQHETIDSSASSAPSVASNSGGSDACTVQSKSFQDCLNHYGSD 120
           GSAVAHRAVDAVMGPRTIQHETIDSS SSAPSVA+N GGSDACTVQSKSFQDCLNHYGSD
Sbjct: 61  GSAVAHRAVDAVMGPRTIQHETIDSSTSSAPSVANNPGGSDACTVQSKSFQDCLNHYGSD 120

Query: 121 ISKCQFYLDMLQECRRSSGSVLGA 144
           ISKCQFYLDMLQECRRSSGSVLGA
Sbjct: 121 ISKCQFYLDMLQECRRSSGSVLGA 144

[Close]

BLAST of Chy3G063000 vs. NCBI nr
Match: KAA0065106.1 (coiled-coil-helix-coiled-coil-helix domain-containing protein 10 [Cucumis melo var. makuwa])

HSP 1 Score: 253 bits (646), Expect = 3.45e-84
Identity = 137/144 (95.14%), Postives = 138/144 (95.83%), Query Frame = 0


Query: 1   MPRRSSGGRSASRPAPRAPLRNPPAPASPAPPPAPVQGGGGGSMLGGLGATIAQGMAFGT 60
           MPRRSSGGRSA RPA RAP RNPPAP + APPPAPVQGGGGGSMLGGLGATIAQGMAFGT
Sbjct: 1   MPRRSSGGRSAPRPAARAPARNPPAPVNSAPPPAPVQGGGGGSMLGGLGATIAQGMAFGT 60

Query: 61  GSAVAHRAVDAVMGPRTIQHETIDSSASSAPSVASNSGGSDACTVQSKSFQDCLNHYGSD 120
           GSAVAHRAVDAVMGPRTIQHETIDSSASSAPSVASNSGGSDAC VQSKSFQDCLNHYGSD
Sbjct: 61  GSAVAHRAVDAVMGPRTIQHETIDSSASSAPSVASNSGGSDACNVQSKSFQDCLNHYGSD 120

Query: 121 ISKCQFYLDMLQECRRSSGSVLGA 144
           ISKCQFYLDMLQECRRSSGSVLGA
Sbjct: 121 ISKCQFYLDMLQECRRSSGSVLGA 144

[Close]

BLAST of Chy3G063000 vs. NCBI nr
Match: XP_008444901.1 (PREDICTED: uncharacterized protein C6C3.02c-like [Cucumis melo])

HSP 1 Score: 252 bits (643), Expect = 9.89e-84
Identity = 136/144 (94.44%), Postives = 138/144 (95.83%), Query Frame = 0


Query: 1   MPRRSSGGRSASRPAPRAPLRNPPAPASPAPPPAPVQGGGGGSMLGGLGATIAQGMAFGT 60
           MPRRSSGGRSA RPA RAP RNPPAP + APPPAPVQGGGGGSMLGGLGATIAQGMAFGT
Sbjct: 1   MPRRSSGGRSAPRPAARAPARNPPAPVNSAPPPAPVQGGGGGSMLGGLGATIAQGMAFGT 60

Query: 61  GSAVAHRAVDAVMGPRTIQHETIDSSASSAPSVASNSGGSDACTVQSKSFQDCLNHYGSD 120
           GSAVAHRAVDAVMGPRTIQHETIDSSASSAPSVA+NSGGSDAC VQSKSFQDCLNHYGSD
Sbjct: 61  GSAVAHRAVDAVMGPRTIQHETIDSSASSAPSVANNSGGSDACNVQSKSFQDCLNHYGSD 120

Query: 121 ISKCQFYLDMLQECRRSSGSVLGA 144
           ISKCQFYLDMLQECRRSSGSVLGA
Sbjct: 121 ISKCQFYLDMLQECRRSSGSVLGA 144

[Close]

BLAST of Chy3G063000 vs. NCBI nr
Match: XP_022962551.1 (coiled-coil-helix-coiled-coil-helix domain-containing protein 10, mitochondrial [Cucurbita moschata] >XP_023545354.1 coiled-coil-helix-coiled-coil-helix domain-containing protein 10, mitochondrial [Cucurbita pepo subsp. pepo] >KAG7029663.1 SPAC6C3.02c [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 243 bits (621), Expect = 2.31e-80
Identity = 134/145 (92.41%), Postives = 136/145 (93.79%), Query Frame = 0


Query: 1   MPRRSSGGRSASRPAPRAPLRNPPAPASPAPPPAPVQGGGGGSMLGGLGATIAQGMAFGT 60
           MPRRSSGGRSASRPAPRAP RN PAPA  APPPAPVQGGGGGSMLGGLGATIAQGMAFGT
Sbjct: 1   MPRRSSGGRSASRPAPRAPPRNTPAPAHSAPPPAPVQGGGGGSMLGGLGATIAQGMAFGT 60

Query: 61  GSAVAHRAVDAVMGPRTIQHETIDSSA-SSAPSVASNSGGSDACTVQSKSFQDCLNHYGS 120
           GSAVAHRAVDAVMGPR IQHET+DSS  SSAPSVASN GGSDAC VQSKSFQDCLNHYGS
Sbjct: 61  GSAVAHRAVDAVMGPRVIQHETVDSSTPSSAPSVASNPGGSDACNVQSKSFQDCLNHYGS 120

Query: 121 DISKCQFYLDMLQECRRSSGSVLGA 144
           DISKCQFYLDMLQECR+SSGSVLGA
Sbjct: 121 DISKCQFYLDMLQECRKSSGSVLGA 145

[Close]

BLAST of Chy3G063000 vs. TAIR 10
Match: AT5G64400.1 (CONTAINS InterPro DOMAIN/s: CHCH (InterPro:IPR010625); BEST Arabidopsis thaliana protein match is: Cox19-like CHCH family protein (TAIR:AT5G09570.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 166.4 bits (420), Expect = 1.7e-41
Identity = 95/146 (65.07%), Postives = 113/146 (77.40%), Query Frame = 0


Query: 1   MPRRSSGGRSASRPAPRAPLRNPPAPASPAPPPAPVQ-GGGGGSMLGGLGATIAQGMAFG 60
           M RRSSGGRSA RP P A     P P   APPPAP Q  GGGG M  G+G+TIAQGMAFG
Sbjct: 1   MGRRSSGGRSAPRPRPAAARSPAPQPVHRAPPPAPAQASGGGGGMFSGIGSTIAQGMAFG 60

Query: 61  TGSAVAHRAVDAVMGPRTIQHETID-SSASSAPSVASNSGGSDACTVQSKSFQDCLNHYG 120
           TGSAVAHRAVD+VMGPRTIQHE ++ +SAS+AP  A ++  S  C + +K+FQDC+  YG
Sbjct: 61  TGSAVAHRAVDSVMGPRTIQHEAVEAASASAAP--AGSAMLSSTCDIHAKAFQDCIGSYG 120

Query: 121 SDISKCQFYLDMLQECRRSSGSVLGA 145
           S+ISKCQFY+DML ECR++SGSV+GA
Sbjct: 121 SEISKCQFYMDMLSECRKNSGSVIGA 144

[Close]

BLAST of Chy3G063000 vs. TAIR 10
Match: AT5G09570.1 (Cox19-like CHCH family protein )

HSP 1 Score: 147.1 bits (370), Expect = 1.1e-35
Identity = 81/145 (55.86%), Postives = 106/145 (73.10%), Query Frame = 0


Query: 1   MPRRSSGGRSASRPAPRAPLRNPPAPA-SPAPPPAPVQGGGGGSMLGGLGATIAQGMAFG 60
           MPR SSGGRS+ RP+  A  R+PP  + + APPPA  Q   GGS LG +GA+I +G+A+G
Sbjct: 1   MPRGSSGGRSSYRPSRPAAARSPPPQSVNRAPPPATAQPSSGGSFLGNIGASITEGLAWG 60

Query: 61  TGSAVAHRAVDAVMGPRTIQHETIDSSASSAPSVASNSGGSDACTVQSKSFQDCLNHYGS 120
           TG+A  HR VD+VMGPRT +HET+ S   SA +  +      AC + SK+FQDC+NH+GS
Sbjct: 61  TGTAFGHRVVDSVMGPRTFKHETVVSQVPSAANTMT------ACDIHSKAFQDCVNHFGS 120

Query: 121 DISKCQFYLDMLQECRRSSGSVLGA 145
           DISKCQFY+DML EC+++SGSV+ A
Sbjct: 121 DISKCQFYMDMLSECKKNSGSVVAA 139

[Close]

BLAST of Chy3G063000 vs. TAIR 10
Match: AT5G64400.2 (BEST Arabidopsis thaliana protein match is: Cox19-like CHCH family protein (TAIR:AT5G09570.1); Has 127 Blast hits to 125 proteins in 40 species: Archae - 0; Bacteria - 9; Metazoa - 16; Fungi - 2; Plants - 64; Viruses - 0; Other Eukaryotes - 36 (source: NCBI BLink). )

HSP 1 Score: 111.7 bits (278), Expect = 5.0e-25
Identity = 72/114 (63.16%), Postives = 84/114 (73.68%), Query Frame = 0


Query: 1   MPRRSSGGRSASRPAPRAPLRNPPAPASPAPPPAPVQ-GGGGGSMLGGLGATIAQGMAFG 60
           M RRSSGGRSA RP P A     P P   APPPAP Q  GGGG M  G+G+TIAQGMAFG
Sbjct: 1   MGRRSSGGRSAPRPRPAAARSPAPQPVHRAPPPAPAQASGGGGGMFSGIGSTIAQGMAFG 60

Query: 61  TGSAVAHRAVDAVMGPRTIQHETID-SSASSAPSVASNSGGSDACTVQSKSFQD 113
           TGSAVAHRAVD+VMGPRTIQHE ++ +SAS+AP  A ++  S  C + +K+FQD
Sbjct: 61  TGSAVAHRAVDSVMGPRTIQHEAVEAASASAAP--AGSAMLSSTCDIHAKAFQD 112

The following BLAST results are available for this feature:

BLAST of Chy3G063000 vs.


Match Name	E-value	Identity	Description

BLAST of Chy3G063000 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LNY2	1.7e-68	98.61	CHCH domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G370390 PE=4 S...	[more]
A0A5A7VFK2	8.5e-65	95.14	Coiled-coil-helix-coiled-coil-helix domain-containing protein 10 OS=Cucumis melo...	[more]
A0A1S3BAZ1	1.9e-64	94.44	uncharacterized protein C6C3.02c-like OS=Cucumis melo OX=3656 GN=LOC103488112 PE...	[more]
A0A6J1HDK4	6.8e-62	92.41	coiled-coil-helix-coiled-coil-helix domain-containing protein 10, mitochondrial ...	[more]
A0A6J1K966	2.0e-61	91.72	coiled-coil-helix-coiled-coil-helix domain-containing protein 10, mitochondrial-...	[more]

BLAST of Chy3G063000 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011649682.1	4.56e-89	98.61	hemiasterlin resistant protein 1 [Cucumis sativus] >KGN62739.1 hypothetical prot...	[more]
XP_038886373.1	6.22e-87	97.22	coiled-coil-helix-coiled-coil-helix domain-containing protein 10, mitochondrial-...	[more]
KAA0065106.1	3.45e-84	95.14	coiled-coil-helix-coiled-coil-helix domain-containing protein 10 [Cucumis melo v...	[more]
XP_008444901.1	9.89e-84	94.44	PREDICTED: uncharacterized protein C6C3.02c-like [Cucumis melo]	[more]
XP_022962551.1	2.31e-80	92.41	coiled-coil-helix-coiled-coil-helix domain-containing protein 10, mitochondrial ...	[more]

BLAST of Chy3G063000 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G64400.1	1.7e-41	65.07	CONTAINS InterPro DOMAIN/s: CHCH (InterPro:IPR010625); BEST Arabidopsis thaliana...	[more]
AT5G09570.1	1.1e-35	55.86	Cox19-like CHCH family protein	[more]
AT5G64400.2	5.0e-25	63.16	BEST Arabidopsis thaliana protein match is: Cox19-like CHCH family protein (TAIR...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR010625	CHCH	PFAM	PF06747	CHCH	coord: 103..136 e-value: 3.3E-8 score: 33.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..46
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 76..102
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 79..102
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 17..36
None	No IPR available	PANTHER	PTHR13523:SF16	SUBFAMILY NOT NAMED	coord: 1..138
None	No IPR available	PANTHER	PTHR13523	COILED-COIL-HELIX-COILED-COIL-HELIX DOMAIN CONTAINING 2/NUR77	coord: 1..138
IPR009069	Cysteine alpha-hairpin motif superfamily	SUPERFAMILY	47072	Cysteine alpha-hairpin motif	coord: 100..136

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy3G063000.1	Chy3G063000.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007005	mitochondrion organization
cellular_component	GO:0005739	mitochondrion
cellular_component	GO:0005634	nucleus