Chy3G062910 (gene) Cucumber (hystrix) v1

Overview
NameChy3G062910
Typegene
OrganismCucumis hystrix (Cucumber (hystrix) v1)
DescriptionUnknown protein
LocationchrH03: 16125885 .. 16127113 (+)
RNA-Seq ExpressionChy3G062910
SyntenyChy3G062910
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATCCGAACTGTAGCCAAAATAATAAATCCTTCCTCTTAAAATCTTCTACAACTTTGCAACTCCCGGCTCTTTTTTTCCCGATCCATTGGCTGAAAATTTGTGGTGTTCAATTTGAATTTGAATCTTCAATCTGTACAACAGCAACAGTCTTTCGCTTCGAAATTTCTTCGTTAAGGTAGATTTCTGTGTTTCTTCTTCAGCTTTTAGTTTTTTCTTTTTCTTTTCTTTTTAATTGCTTTATCATTATTGATTTGATTGAGCGTTTCGCTTAAGATTCCTGGGTTTTTTTTTTTTTTGGTTACTTTCGGTTGCAATGTTTGAAAAACAAGTTTTCGGAAAGTCAATTACTAGTGGGAGAAGGAGGAGGTTGCTTCAGGAATAAATTGAATTAAGATTTTGTTTGGGTTTGGAATTTGAGAGTTTTGACGATTTAGAGGTATTTGTCGGTTTAAATTTTCAGTGCTTGAATGAGTTTGAAATCGAACAAGAGAACGTGATTTTTTTATTTTTTTTGTCCTTTTTTTTTTATATGTAGAAACAATATTAAATTTTAGGTTCTTTGAATTTAGCCGACTTTTTTAGTAGAAGCAATCTCTTGAAACGAAATAAGGGCAAAAGGATTTCTCATGGCTCTAATCGGGAATTTTGAGGGAGATAAATTTAGTAAAGGCGTGTTTCCTTTTTCGGACACAGCTCGATTTTGTCAAGTTGGTTTCTCGGTAGTGGTTATTGTTTTGATTTATCTTTTTCCAATTCTGTGAAAGCTTCTATATAGATTGGGCAACTGGATTTAGAAGTTTTTGTCTATCGTAATCATATCCTAAAAATATTATATATTTCATTAGCTATTTTTTTCTTGTTCTTCTGTCTTGATTCTACAATCTGGAAACTTGGTCAAAAGCCTTGAAGAATCTTAGGTGATTCCTGATTTTCAAGGCTTGAAGTGGTCAAACAGAGTTATCTCTCTTCTTTTTCTTCCTTCCTGAGCTTGTGGGATCCTTTGGATACATCCGAAACTCCATCGTTTAGTCTATTATGCTACATTAGATGTGATGAAATTCGATTGTTTGTTTCTTAATTTTGTTAATATCGGCAATCTATGATTGCAGCAATCTCGTTTGTTGTCATTTCGCAATTTGATTTTTCGGTTTCTTCCTGCTTTCTTATCCTTAACAGGGAAAAACTTGCTCCATTTCACATCTCATACTTTAGAATCTACTTGTGA

mRNA sequence

ATGGATCCGAACTGTAGCCAAAATAATAAATCCTTCCTCTTAAAATCTTCTACAACTTTGCAACTCCCGGCTCTTTTTTTCCCGATCCATTGGCTGAAAATTTGTGGTGTTCAATTTGAATTTGAATCTTCAATCTGTACAACAGCAACAGTCTTTCGCTTCGAAATTTCTTCGTTAAGGGAAAAACTTGCTCCATTTCACATCTCATACTTTAGAATCTACTTGTGA

Coding sequence (CDS)

ATGGATCCGAACTGTAGCCAAAATAATAAATCCTTCCTCTTAAAATCTTCTACAACTTTGCAACTCCCGGCTCTTTTTTTCCCGATCCATTGGCTGAAAATTTGTGGTGTTCAATTTGAATTTGAATCTTCAATCTGTACAACAGCAACAGTCTTTCGCTTCGAAATTTCTTCGTTAAGGGAAAAACTTGCTCCATTTCACATCTCATACTTTAGAATCTACTTGTGA

Protein sequence

MDPNCSQNNKSFLLKSSTTLQLPALFFPIHWLKICGVQFEFESSICTTATVFRFEISSLREKLAPFHISYFRIYL*
Homology
[Close]
BLAST of Chy3G062910 vs. ExPASy TrEMBL
Match: A0A0A0LRV1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G370500 PE=4 SV=1)

HSP 1 Score: 151.8 bits (382), Expect = 1.2e-33
Identity = 72/75 (96.00%), Postives = 73/75 (97.33%), Query Frame = 0 

Query: 1  MDPNCSQNNKSFLLKSSTTLQLPALFFPIHWLKICGVQFEFESSICTTATVFRFEISSLR 60
          MDPNCSQNNKSFLLKSSTTLQLPALFFPIHWLK CGVQFEFESSIC TATVFRF+ISSLR
Sbjct: 1  MDPNCSQNNKSFLLKSSTTLQLPALFFPIHWLKFCGVQFEFESSICRTATVFRFQISSLR 60

Query: 61 EKLAPFHISYFRIYL 76
          EKLAPFHISYFRIYL
Sbjct: 61 EKLAPFHISYFRIYL 75

[Close]
BLAST of Chy3G062910 vs. NCBI nr
Match: KGN62751.1 (hypothetical protein Csa_022116 [Cucumis sativus])

HSP 1 Score: 152 bits (383), Expect = 2.94e-46
Identity = 72/75 (96.00%), Postives = 73/75 (97.33%), Query Frame = 0 

Query: 1  MDPNCSQNNKSFLLKSSTTLQLPALFFPIHWLKICGVQFEFESSICTTATVFRFEISSLR 60
          MDPNCSQNNKSFLLKSSTTLQLPALFFPIHWLK CGVQFEFESSIC TATVFRF+ISSLR
Sbjct: 1  MDPNCSQNNKSFLLKSSTTLQLPALFFPIHWLKFCGVQFEFESSICRTATVFRFQISSLR 60

Query: 61 EKLAPFHISYFRIYL 75
          EKLAPFHISYFRIYL
Sbjct: 61 EKLAPFHISYFRIYL 75

The following BLAST results are available for this feature:
BLAST of Chy3G062910 vs.
Match NameE-valueIdentityDescription
BLAST of Chy3G062910 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LRV11.2e-3396.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G370500 PE=4 SV=1[more]
BLAST of Chy3G062910 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN62751.12.94e-4696.00hypothetical protein Csa_022116 [Cucumis sativus][more]
BLAST of Chy3G062910 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Chy3G062910.1Chy3G062910.1mRNA