Chy3G062520 (gene) Cucumber (hystrix) v1

Overview
NameChy3G062520
Typegene
OrganismCucumis hystrix (Cucumber (hystrix) v1)
DescriptionUnknown protein
LocationchrH03: 15752191 .. 15752780 (+)
RNA-Seq ExpressionChy3G062520
SyntenyChy3G062520
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGAGAAAAAACCCCCCGCTCAATCAATCTCCCACTGAAACCCTAGAAATCGCCCAGCAAAAACACGAACGGAGAAGGTAAGATTGAGGTGTTTTTTTCTTTTGTAAGAACAAATGAGAGAGAAAGAAGGAAGGAAGAGGCCTTTACTTATTTCCTGGACGACTAAAAATGACACAGAAATATTCCAAAACGGCTTGAGCTCAATACGCTCTTCCACGTGTCATTAGTTCATTCGTCCAATCCTATCGTCAACTCTCTTTTTTGACTTTTCTTTGTTTTCCCGCGCGGGGGTTGGCACGTGTGGAGGTTAATCGTGGTACTTTGTCACCTTCATCATTAAATCATAATGAACCATACTTCTATTCCAATACCGTGAAAACCACTCGCTATTACCAAACGACGGCGTTTCTAAAGGAATCCGTCAAATCCGTCGTTTTCTTGTCCGAGCGAGTGCCGTTCAAGCGCGTGCGTGACAGATATTCATTTACGGAGATGGGGTGTGATAATATGTTTATGTTTGGGATGTAGTTTTGTCACGGACCAATGAGGAGGAGACAGGTAGGATATTGGTCAAGGTTTTTGACTAA

mRNA sequence

ATGGTGAGAAAAAACCCCCCGCTCAATCAATCTCCCACTGAAACCCTAGAAATCGCCCAGCAAAAACACGAACGGAGAAGAAATATTCCAAAACGGCTTGAGCTCAATACGCTCTTCCACGTGTCATTAGTTCATTCGTCCAATCCTATCGGGTTGGCACGTGTGGAGGTTAATCGTGGTACTTTGTCACCTTCATCATTAAATCATAATGAACCATACTTCTATTCCAATACCGTGAAAACCACTCGCTATTACCAAACGACGGCGTTTCTAAAGGAATCCGTCAAATCCGTCGTTTTCTTGTCCGAGCGAGTGCCGTTCAAGCGCGTGCGTGACAGATATTCATTTACGGAGATGGGGTGTGATAATATGTTTATGTTTGGGATGTAGTTTTGTCACGGACCAATGAGGAGGAGACAGGTAGGATATTGGTCAAGGTTTTTGACTAA

Coding sequence (CDS)

ATGGTGAGAAAAAACCCCCCGCTCAATCAATCTCCCACTGAAACCCTAGAAATCGCCCAGCAAAAACACGAACGGAGAAGAAATATTCCAAAACGGCTTGAGCTCAATACGCTCTTCCACGTGTCATTAGTTCATTCGTCCAATCCTATCGGGTTGGCACGTGTGGAGGTTAATCGTGGTACTTTGTCACCTTCATCATTAAATCATAATGAACCATACTTCTATTCCAATACCGTGAAAACCACTCGCTATTACCAAACGACGGCGTTTCTAAAGGAATCCGTCAAATCCGTCGTTTTCTTGTCCGAGCGAGTGCCGTTCAAGCGCGTGCGTGACAGATATTCATTTACGGAGATGGGGTGTGATAATATGTTTATGTTTGGGATGTAGTTTTGTCACGGACCAATGAGGAGGAGACAGGTAGGATATTGGTCAAGGTTTTTGACTAA

Protein sequence

MVRKNPPLNQSPTETLEIAQQKHERRRNIPKRLELNTLFHVSLVHSSNPIGLARVEVNRGTLSPSSLNHNEPYFYSNTVKTTRYYQTTAFLKESVKSVVFLSERVPFKRVRDRYSFTEMGCDNMFMFGM*FCHGPMRRRQVGYWSRFLTX
Homology
[Close]
BLAST of Chy3G062520 vs. ExPASy TrEMBL
Match: A0A0A0LP26 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G372840 PE=4 SV=1)

HSP 1 Score: 236.9 bits (603), Expect = 5.5e-59
Identity = 120/127 (94.49%), Postives = 121/127 (95.28%), Query Frame = 0 

Query: 1   MVRKNPPLNQSPTETLEIAQQKHERRRNIPKRLELNTLFHVSLVHSSNPIGLARVEVNRG 60
           MVRKNPPLNQSPTETLEIAQQKHERRRNIPKRLELNTLFHVSL HS NPIGLARVEVNRG
Sbjct: 1   MVRKNPPLNQSPTETLEIAQQKHERRRNIPKRLELNTLFHVSLTHSLNPIGLARVEVNRG 60

Query: 61  TLSPSSLNHNEPYFYSNTVKTTRYYQTTAFLKESVKSVVFLSERVPFKRVRDRYSFTEMG 120
           TLS SSLNHNEPY YSNTVKTTRYYQTTAFLKESVKSVVFLSERV FKR+RDR SFTEMG
Sbjct: 61  TLSHSSLNHNEPYSYSNTVKTTRYYQTTAFLKESVKSVVFLSERVSFKRLRDRDSFTEMG 120

Query: 121 CDNMFMF 128
           CDNMFMF
Sbjct: 121 CDNMFMF 127

[Close]
BLAST of Chy3G062520 vs. NCBI nr
Match: KGN62789.1 (hypothetical protein Csa_021987 [Cucumis sativus])

HSP 1 Score: 236 bits (603), Expect = 1.79e-77
Identity = 120/127 (94.49%), Postives = 121/127 (95.28%), Query Frame = 0 

Query: 1   MVRKNPPLNQSPTETLEIAQQKHERRRNIPKRLELNTLFHVSLVHSSNPIGLARVEVNRG 60
           MVRKNPPLNQSPTETLEIAQQKHERRRNIPKRLELNTLFHVSL HS NPIGLARVEVNRG
Sbjct: 1   MVRKNPPLNQSPTETLEIAQQKHERRRNIPKRLELNTLFHVSLTHSLNPIGLARVEVNRG 60

Query: 61  TLSPSSLNHNEPYFYSNTVKTTRYYQTTAFLKESVKSVVFLSERVPFKRVRDRYSFTEMG 120
           TLS SSLNHNEPY YSNTVKTTRYYQTTAFLKESVKSVVFLSERV FKR+RDR SFTEMG
Sbjct: 61  TLSHSSLNHNEPYSYSNTVKTTRYYQTTAFLKESVKSVVFLSERVSFKRLRDRDSFTEMG 120

Query: 121 CDNMFMF 127
           CDNMFMF
Sbjct: 121 CDNMFMF 127

The following BLAST results are available for this feature:
BLAST of Chy3G062520 vs.
Match NameE-valueIdentityDescription
BLAST of Chy3G062520 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LP265.5e-5994.49Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G372840 PE=4 SV=1[more]
BLAST of Chy3G062520 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN62789.11.79e-7794.49hypothetical protein Csa_021987 [Cucumis sativus][more]
BLAST of Chy3G062520 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Chy3G062520.1Chy3G062520.1mRNA