Chy3G061890 (gene) Cucumber (hystrix) v1

Overview
NameChy3G061890
Typegene
OrganismCucumis hystrix (Cucumber (hystrix) v1)
Description50S ribosomal protein L18-like
LocationchrH03: 15184850 .. 15186412 (-)
RNA-Seq ExpressionChy3G061890
SyntenyChy3G061890
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCTTCACAGCAATAGCTTCTTCGCTGCCATCTTGTTCTTCTGTGTTCTCCTCCCAGGGGCCATCAACTCCATTACAGAAATCCTCTTCTCTATCGTGGGCATCTTCATTTCCGCATGTTAGCATATTCAGAGGCTCTCCTTTCGCCTCTTCTAATTCCCCGTATGCCAAGGTACAATTTCTTCACTGCTATCCTACTTCATTCCCTACTATCCGTGACGATATCTTAGTTACATTTTGAAGTTTGTGATTTATCGATTGTGGGGCACGAATTTCTCTATTGTTGTTCACTTTTGTTGGCAGAAGCAGAATTTTATGCGACAAAGTTTAATCTGTGGTTGGTTTGTTGCTAACTGTGTATTCAAGCCAATAGTCAATATGAACTCAGCCATATCGCAACTTTCCTTGAACTTGCTGCATAGTAAAGGAGAGAAAGAATTGCGTGATAATTTATAAAGAATTATCATGATTACTTTTCAGGATATGTTTTTAGAATTTAAAAGGAATACTGGGTGCAATCATTTTCTGAGAATAGTCTTGCTGTTATTATGGATGAAAGACAGAAATGAGCGTTCCATGGAATACAGAGTTCTCAACTATTTTCTGCTTTGTTCTAGGTCAAATGATTTCATTGCTATTGTTGAGTAGTGTCCCAGTTCCACTTCTTTCAAATACTTCGTTTTCGACCTTCTATTTTAGGTGGGTGTGAAATTGCGGACAACATTTTGAACTTAGAAATTTTCCTGATAATTGACAGCCAACCTTTTGAACCCAGGACCATTTAGTTAAGTCTGCGAGAAGTTTTCTCTACGTTAACATACTTGGACTCAGCTAGGCTACATTAACAATTTTCCAACTTGAAATGTGGAATATTCAGGAAGATTTGCATTGAACGTGAATACTGCTTTATTGAAGAAGAGGAAGAGAGAACCCCGTTTTGGACCACATACCAATGTTTATACAACTCATAGTTAAACTCTATACAACCCACAACTAACACCACTGAACCACTACTTATTTACAGACAAGAAAAACACAACTAAAACAACACATACTACTATGAAACTCAAGATAAACGAACAGATAGGCGGATGAGGTCAGGCGCCGCGTGCCAGGTCCACAATCTCTACCTGGAAAGTAAGAAAACATTTTTTGAAAGAGTGAGCTAAAGCTCAATGAGTGACTAGTTTTAAAACAAACATGCTTTAACAAAACAATGAGTAGTAAACTGAACTAGCATAAAACATACAACACAGGAATATAAACAACTTATATTAACACGGAGTGTAGCCCAACTTACAACAACCAAACAAGTCTGATATAGACATAAAATGCTATCATTGTTACACAACTTTCGTGGTGGTTATTTTCGTTGGTTTAATCAGATTATTGTTTCAAAAGTTTGTTGGTAGCTAGCAAGCTTGGTATCAAGTTTAAAACACTTGCTATGGCTTGTGAATCTGTGATTGTGAGACTTGCTAGCTACATGGATAATAGAACTTGTGTCAATCTTCAACCTTTGGCTTTTCTTCCTTTTGAGGCTAGAAGTAATGTTACTGTG

mRNA sequence

ATGGCCTTCACAGCAATAGCTTCTTCGCTGCCATCTTGTTCTTCTGTGTTCTCCTCCCAGGGGCCATCAACTCCATTACAGAAATCCTCTTCTCTATCGTGGGCATCTTCATTTCCGCATGTTAGCATATTCAGAGGCTCTCCTTTCGCCTCTTCTAATTCCCCGTATGCCAAGAAGCAGAATTTTATGCGACAAAGTTTAATCTGTGGTTGGTTTGTTGCTAACTGTGTATTCAAGCCAATAGTCAATATGAACTCAGCCATATCGCAACTTTCCTTGAACTTGCTGCATACTAGCAAGCTTGGTATCAAGTTTAAAACACTTGCTATGGCTTGTGAATCTGTGATTGTGAGACTTGCTAGCTACATGGATAATAGAACTTGTGTCAATCTTCAACCTTTGGCTTTTCTTCCTTTTGAGGCTAGAAGTAATGTTACTGTG

Coding sequence (CDS)

ATGGCCTTCACAGCAATAGCTTCTTCGCTGCCATCTTGTTCTTCTGTGTTCTCCTCCCAGGGGCCATCAACTCCATTACAGAAATCCTCTTCTCTATCGTGGGCATCTTCATTTCCGCATGTTAGCATATTCAGAGGCTCTCCTTTCGCCTCTTCTAATTCCCCGTATGCCAAGAAGCAGAATTTTATGCGACAAAGTTTAATCTGTGGTTGGTTTGTTGCTAACTGTGTATTCAAGCCAATAGTCAATATGAACTCAGCCATATCGCAACTTTCCTTGAACTTGCTGCATACTAGCAAGCTTGGTATCAAGTTTAAAACACTTGCTATGGCTTGTGAATCTGTGATTGTGAGACTTGCTAGCTACATGGATAATAGAACTTGTGTCAATCTTCAACCTTTGGCTTTTCTTCCTTTTGAGGCTAGAAGTAATGTTACTGTG

Protein sequence

MAFTAIASSLPSCSSVFSSQGPSTPLQKSSSLSWASSFPHVSIFRGSPFASSNSPYAKKQNFMRQSLICGWFVANCVFKPIVNMNSAISQLSLNLLHTSKLGIKFKTLAMACESVIVRLASYMDNRTCVNLQPLAFLPFEARSNVTV
Homology
[Close]
BLAST of Chy3G061890 vs. ExPASy TrEMBL
Match: A0A1S3B2Q8 (50S ribosomal protein L18-like OS=Cucumis melo OX=3656 GN=LOC103485371 PE=4 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 5.0e-20
Identity = 56/58 (96.55%), Postives = 57/58 (98.28%), Query Frame = 0 

Query: 1  MAFTAIASSLPSCSSVFSSQGPSTPLQKSSSLSWASSFPHVSIFRGSPFASSNSPYAK 59
          MAFTAIASSLPSCSSVFSSQGPSTPLQKSSSLSWASSFPHV+IFRGSPFASSN PYAK
Sbjct: 1  MAFTAIASSLPSCSSVFSSQGPSTPLQKSSSLSWASSFPHVNIFRGSPFASSNPPYAK 58

[Close]
BLAST of Chy3G061890 vs. ExPASy TrEMBL
Match: A0A6J1HH86 (uncharacterized protein LOC111464045 OS=Cucurbita moschata OX=3662 GN=LOC111464045 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 5.7e-08
Identity = 41/64 (64.06%), Postives = 49/64 (76.56%), Query Frame = 0 

Query: 1  MAFTAIASSLPSCS---SVFSSQ---GPSTPLQKSSSLSWASSFPHVSIFRGSPFASSNS 59
          MAFTAI+SS+PS +   S+ SSQ    P+TP QKSSSLSWASSFP +S+ RGSPF SSN 
Sbjct: 1  MAFTAISSSMPSSAFVRSILSSQCISTPTTPSQKSSSLSWASSFPSISLSRGSPFVSSNP 60

[Close]
BLAST of Chy3G061890 vs. ExPASy TrEMBL
Match: A0A6J1JHY7 (uncharacterized protein LOC111487153 OS=Cucurbita maxima OX=3661 GN=LOC111487153 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 2.2e-07
Identity = 42/63 (66.67%), Postives = 48/63 (76.19%), Query Frame = 0 

Query: 1  MAFTAIASSLPSCSSV---FSSQGPSTPL--QKSSSLSWASSFPHVSIFRGSPFASSNSP 59
          MAFTAI+SS+PS +SV    SSQ  STP   QKSSSLSWASSFP +S+ RGSPF SSN  
Sbjct: 1  MAFTAISSSMPSSASVRSILSSQCISTPTTPQKSSSLSWASSFPSISLSRGSPFVSSNPA 60

[Close]
BLAST of Chy3G061890 vs. ExPASy TrEMBL
Match: A0A6J1JY30 (uncharacterized protein LOC111489327 OS=Cucurbita maxima OX=3661 GN=LOC111489327 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 2.2e-07
Identity = 43/64 (67.19%), Postives = 46/64 (71.88%), Query Frame = 0 

Query: 1  MAFTAIASSLPSCS---SVFSSQGPSTPL---QKSSSLSWASSFPHVSIFRGSPFASSNS 59
          MAF AI+SSLPSCS   SV S Q PSTP    QKSSSLSWASSFPHV+I RGS   SSN 
Sbjct: 1  MAFIAISSSLPSCSSVPSVLSFQWPSTPTILSQKSSSLSWASSFPHVTISRGSHVVSSNP 60

[Close]
BLAST of Chy3G061890 vs. ExPASy TrEMBL
Match: A0A6J1FFK7 (uncharacterized protein LOC111445279 OS=Cucurbita moschata OX=3662 GN=LOC111445279 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 3.1e-06
Identity = 42/66 (63.64%), Postives = 46/66 (69.70%), Query Frame = 0 

Query: 1  MAFTAIASSLPSCS-----SVFSSQGPSTPL---QKSSSLSWASSFPHVSIFRGSPFASS 59
          MAFTAI+SSL S S     SV S Q PS+P    QKSSSLSWASSFPHV+I RGSP  SS
Sbjct: 1  MAFTAISSSLQSSSSSSVPSVISFQCPSSPAILSQKSSSLSWASSFPHVTISRGSPVVSS 60

[Close]
BLAST of Chy3G061890 vs. NCBI nr
Match: XP_008441144.1 (PREDICTED: 50S ribosomal protein L18-like [Cucumis melo])

HSP 1 Score: 107 bits (267), Expect = 5.30e-26
Identity = 56/58 (96.55%), Postives = 57/58 (98.28%), Query Frame = 0 

Query: 1  MAFTAIASSLPSCSSVFSSQGPSTPLQKSSSLSWASSFPHVSIFRGSPFASSNSPYAK 58
          MAFTAIASSLPSCSSVFSSQGPSTPLQKSSSLSWASSFPHV+IFRGSPFASSN PYAK
Sbjct: 1  MAFTAIASSLPSCSSVFSSQGPSTPLQKSSSLSWASSFPHVNIFRGSPFASSNPPYAK 58

[Close]
BLAST of Chy3G061890 vs. NCBI nr
Match: XP_038886307.1 (50S ribosomal protein L18-like [Benincasa hispida])

HSP 1 Score: 72.4 bits (176), Expect = 1.64e-12
Identity = 43/58 (74.14%), Postives = 46/58 (79.31%), Query Frame = 0 

Query: 1  MAFTAIASSLPSCSSVFSSQGPSTPLQKSSSLSWASSFPHVSIFRGSPFASSNSPYAK 58
          MAFTAI+SSLPSCSSV      S PL KSSSLSWASSFPHVSI RGSPFAS +  +AK
Sbjct: 1  MAFTAISSSLPSCSSV-----RSVPLPKSSSLSWASSFPHVSISRGSPFASFSPAHAK 53

[Close]
BLAST of Chy3G061890 vs. NCBI nr
Match: XP_023521951.1 (uncharacterized protein LOC111785799 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 67.8 bits (164), Expect = 1.14e-10
Identity = 42/64 (65.62%), Postives = 49/64 (76.56%), Query Frame = 0 

Query: 1  MAFTAIASSLPSCSSV---FSSQ---GPSTPLQKSSSLSWASSFPHVSIFRGSPFASSNS 58
          MAFTAI+SS+PS +SV    SSQ    P+TP QKSSSLSWASSFP +S+ RGSPF SSN 
Sbjct: 1  MAFTAISSSMPSSASVRSILSSQCISTPTTPSQKSSSLSWASSFPSISLSRGSPFVSSNP 60

[Close]
BLAST of Chy3G061890 vs. NCBI nr
Match: XP_022963861.1 (uncharacterized protein LOC111464045 [Cucurbita moschata])

HSP 1 Score: 67.4 bits (163), Expect = 1.59e-10
Identity = 41/64 (64.06%), Postives = 49/64 (76.56%), Query Frame = 0 

Query: 1  MAFTAIASSLPSCS---SVFSSQ---GPSTPLQKSSSLSWASSFPHVSIFRGSPFASSNS 58
          MAFTAI+SS+PS +   S+ SSQ    P+TP QKSSSLSWASSFP +S+ RGSPF SSN 
Sbjct: 1  MAFTAISSSMPSSAFVRSILSSQCISTPTTPSQKSSSLSWASSFPSISLSRGSPFVSSNP 60

[Close]
BLAST of Chy3G061890 vs. NCBI nr
Match: KAG6578302.1 (hypothetical protein SDJN03_22750, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 64.7 bits (156), Expect = 4.77e-10
Identity = 43/66 (65.15%), Postives = 47/66 (71.21%), Query Frame = 0 

Query: 1  MAFTAIASSLPSCSS-----VFSSQGPSTPL---QKSSSLSWASSFPHVSIFRGSPFASS 58
          MAFTAI+SSLPS SS     V S Q PS+P    QKSSSLSWASSFPHV+I RGSP  SS
Sbjct: 1  MAFTAISSSLPSSSSSSVPSVISLQCPSSPAILSQKSSSLSWASSFPHVTISRGSPVVSS 60

The following BLAST results are available for this feature:
BLAST of Chy3G061890 vs.
Match NameE-valueIdentityDescription
BLAST of Chy3G061890 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A1S3B2Q85.0e-2096.5550S ribosomal protein L18-like OS=Cucumis melo OX=3656 GN=LOC103485371 PE=4 SV=1[more]
A0A6J1HH865.7e-0864.06uncharacterized protein LOC111464045 OS=Cucurbita moschata OX=3662 GN=LOC1114640... [more]
A0A6J1JHY72.2e-0766.67uncharacterized protein LOC111487153 OS=Cucurbita maxima OX=3661 GN=LOC111487153... [more]
A0A6J1JY302.2e-0767.19uncharacterized protein LOC111489327 OS=Cucurbita maxima OX=3661 GN=LOC111489327... [more]
A0A6J1FFK73.1e-0663.64uncharacterized protein LOC111445279 OS=Cucurbita moschata OX=3662 GN=LOC1114452... [more]
BLAST of Chy3G061890 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008441144.15.30e-2696.55PREDICTED: 50S ribosomal protein L18-like [Cucumis melo][more]
XP_038886307.11.64e-1274.1450S ribosomal protein L18-like [Benincasa hispida][more]
XP_023521951.11.14e-1065.63uncharacterized protein LOC111785799 [Cucurbita pepo subsp. pepo][more]
XP_022963861.11.59e-1064.06uncharacterized protein LOC111464045 [Cucurbita moschata][more]
KAG6578302.14.77e-1065.15hypothetical protein SDJN03_22750, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of Chy3G061890 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Chy3G061890.1Chy3G061890.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0005737 cytoplasm
cellular_component GO:0005840 ribosome
molecular_function GO:0003729 mRNA binding
molecular_function GO:0003735 structural constituent of ribosome