Chy3G060620 (gene) Cucumber (hystrix) v1

Overview
NameChy3G060620
Typegene
OrganismCucumis hystrix (Cucumber (hystrix) v1)
DescriptionUnknown protein
LocationchrH03: 14198828 .. 14199013 (-)
RNA-Seq ExpressionChy3G060620
SyntenyChy3G060620
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGAGTAAACGAGGAGGCATCGAGGAAGACGACGGGGTGGGTATTGAGCCGAAAGAGGAAACTTCCATTCAGCAACACCACTATCGCTATTGCTGGAACTCTCCTCCTCGGAATCGGCTACATGGTTTATGTCAACAAATCCAGAAATAATAACGATAACATTCACCGCCAACCTAGTCGATGA

mRNA sequence

ATGGGAGTAAACGAGGAGGCATCGAGGAAGACGACGGGGTGGGTATTGAGCCGAAAGAGGAAACTTCCATTCAGCAACACCACTATCGCTATTGCTGGAACTCTCCTCCTCGGAATCGGCTACATGGTTTATGTCAACAAATCCAGAAATAATAACGATAACATTCACCGCCAACCTAGTCGATGA

Coding sequence (CDS)

ATGGGAGTAAACGAGGAGGCATCGAGGAAGACGACGGGGTGGGTATTGAGCCGAAAGAGGAAACTTCCATTCAGCAACACCACTATCGCTATTGCTGGAACTCTCCTCCTCGGAATCGGCTACATGGTTTATGTCAACAAATCCAGAAATAATAACGATAACATTCACCGCCAACCTAGTCGATGA

Protein sequence

MGVNEEASRKTTGWVLSRKRKLPFSNTTIAIAGTLLLGIGYMVYVNKSRNNNDNIHRQPSR*
Homology
[Close]
BLAST of Chy3G060620 vs. ExPASy TrEMBL
Match: A0A0A0LSP0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G382690 PE=4 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 1.1e-24
Identity = 58/61 (95.08%), Postives = 60/61 (98.36%), Query Frame = 0 

Query: 1  MGVNEEASRKTTGWVLSRKRKLPFSNTTIAIAGTLLLGIGYMVYVNKSRNNNDNIHRQPS 60
          MGVN+EASRKTTGWVLSRKR LPFSNTTIAIAGTLLLGIGYMVYVNKS+NNNDNIHRQPS
Sbjct: 1  MGVNDEASRKTTGWVLSRKRNLPFSNTTIAIAGTLLLGIGYMVYVNKSKNNNDNIHRQPS 60

Query: 61 R 62
          R
Sbjct: 61 R 61

[Close]
BLAST of Chy3G060620 vs. ExPASy TrEMBL
Match: A0A5A7VG71 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold82G001980 PE=4 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 6.5e-22
Identity = 55/62 (88.71%), Postives = 59/62 (95.16%), Query Frame = 0 

Query: 1  MGVN-EEASRKTTGWVLSRKRKLPFSNTTIAIAGTLLLGIGYMVYVNKSRNNNDNIHRQP 60
          MG+N +EASRKTTGWVLSRKR LPFSNTT+AIAGTLLLGIGYMVYVNKSRNNND IHRQP
Sbjct: 1  MGLNDQEASRKTTGWVLSRKRNLPFSNTTMAIAGTLLLGIGYMVYVNKSRNNNDTIHRQP 60

Query: 61 SR 62
          +R
Sbjct: 61 TR 62

[Close]
BLAST of Chy3G060620 vs. NCBI nr
Match: KGN62996.1 (hypothetical protein Csa_021855 [Cucumis sativus])

HSP 1 Score: 120 bits (302), Expect = 2.57e-34
Identity = 58/61 (95.08%), Postives = 60/61 (98.36%), Query Frame = 0 

Query: 1  MGVNEEASRKTTGWVLSRKRKLPFSNTTIAIAGTLLLGIGYMVYVNKSRNNNDNIHRQPS 60
          MGVN+EASRKTTGWVLSRKR LPFSNTTIAIAGTLLLGIGYMVYVNKS+NNNDNIHRQPS
Sbjct: 1  MGVNDEASRKTTGWVLSRKRNLPFSNTTIAIAGTLLLGIGYMVYVNKSKNNNDNIHRQPS 60

[Close]
BLAST of Chy3G060620 vs. NCBI nr
Match: KAA0064885.1 (hypothetical protein E6C27_scaffold82G001980 [Cucumis melo var. makuwa])

HSP 1 Score: 111 bits (278), Expect = 1.22e-30
Identity = 55/62 (88.71%), Postives = 59/62 (95.16%), Query Frame = 0 

Query: 1  MGVNE-EASRKTTGWVLSRKRKLPFSNTTIAIAGTLLLGIGYMVYVNKSRNNNDNIHRQP 60
          MG+N+ EASRKTTGWVLSRKR LPFSNTT+AIAGTLLLGIGYMVYVNKSRNNND IHRQP
Sbjct: 1  MGLNDQEASRKTTGWVLSRKRNLPFSNTTMAIAGTLLLGIGYMVYVNKSRNNNDTIHRQP 60

The following BLAST results are available for this feature:
BLAST of Chy3G060620 vs.
Match NameE-valueIdentityDescription
BLAST of Chy3G060620 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LSP01.1e-2495.08Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G382690 PE=4 SV=1[more]
A0A5A7VG716.5e-2288.71Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
BLAST of Chy3G060620 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN62996.12.57e-3495.08hypothetical protein Csa_021855 [Cucumis sativus][more]
KAA0064885.11.22e-3088.71hypothetical protein E6C27_scaffold82G001980 [Cucumis melo var. makuwa][more]
BLAST of Chy3G060620 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Chy3G060620.1Chy3G060620.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane