Chy3G060120 (gene) Cucumber (hystrix) v1

Overview
NameChy3G060120
Typegene
OrganismCucumis hystrix (Cucumber (hystrix) v1)
DescriptionUnknown protein
LocationchrH03: 13859153 .. 13859657 (-)
RNA-Seq ExpressionChy3G060120
SyntenyChy3G060120
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGTCATGTTATCGAAGAAAAGTTGGAGTTGAATAGGCAGAAACTTAGAGGCATGGGAAATATTAAAGTGGGGAGTAAAGGCATATCAATCAGGGACTTAGAAATACTAAAGCTGTTCTAAACTATATGGCTATTGTTACGGGGAATTCTTGTAGGGCGTGCCTATGTTTTATCTATACTCTTTGTCAACATTTAGGCTGTTCTCAAACCTAAGCACGTTATGCTTTTTAGCCCTTACGAAAACAGATTCATTGTAACAGTCTAGTCCTACTTTAAGGAAAAGGATCAAAACTGATATTGAAACTGTAAAGAGATTAAGTTTTATCACAACTCTCCTTGATCCTGTAAGGTTGTTACACCAAAATCAATACAGTAAACTACAATGAGGCAACACCACCTTTAAGTACAAATTCAGACTGGGTCTGAAAGAACGAGAAATTGCTATTTGTAACATGGATCTAGCAGATTATTCTCACAGATGCTTTTGTGATCTAATGTTCTAA

mRNA sequence

ATGTGTCATGTTATCGAAGAAAAGTTGGAGTTGAATAGGCAGAAACTTAGAGGCATGGGAAATATTAAATCTAGTCCTACTTTAAGGAAAAGGATCAAAACTGATATTGAAACTGTAAAGAGATTAAGTTTTATCACAACTCTCCTTGATCCTGTAAGGTTGTTACACCAAAATCAATACAGTAAACTACAATGAGGCAACACCACCTTTAAGTACAAATTCAGACTGGGTCTGAAAGAACGAGAAATTGCTATTTGTAACATGGATCTAGCAGATTATTCTCACAGATGCTTTTGTGATCTAATGTTCTAA

Coding sequence (CDS)

ATGTGTCATGTTATCGAAGAAAAGTTGGAGTTGAATAGGCAGAAACTTAGAGGCATGGGAAATATTAAATCTAGTCCTACTTTAAGGAAAAGGATCAAAACTGATATTGAAACTGTAAAGAGATTAAGTTTTATCACAACTCTCCTTGATCCTGTAAGGTTGTTACACCAAAATCAATACAGTAAACTACAATGAGGCAACACCACCTTTAAGTACAAATTCAGACTGGGTCTGAAAGAACGAGAAATTGCTATTTGTAACATGGATCTAGCAGATTATTCTCACAGATGCTTTTGTGATCTAATGTTCTAA

Protein sequence

MCHVIEEKLELNRQKLRGMGNIKSSPTLRKRIKTDIETVKRLSFITTLLDPVRLLHQNQYSKLQ*GNTTFKYKFRLGLKEREIAICNMDLADYSHRCFCDLMF*
Homology
[Close]
BLAST of Chy3G060120 vs. ExPASy TrEMBL
Match: A0A0A0LN75 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G345980 PE=4 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 1.1e-32
Identity = 80/103 (77.67%), Postives = 82/103 (79.61%), Query Frame = 0 

Query: 1   MCHVIEEKLELNRQKLRGMGNIKSSPTLRKRIKTDIETVKRLSFITTLLDPVRLLHQNQY 60
           M HVI EKLELN QKLRG GNIKSSP LRKRIK DIE VKRLSFITTLLDPVRLLHQNQY
Sbjct: 1   MRHVINEKLELNGQKLRGTGNIKSSPALRKRIKNDIEPVKRLSFITTLLDPVRLLHQNQY 60

Query: 61  SKLQ*GNTTFKYKFRLGLKEREIAICNMDLADYSHRCFCDLMF 104
           S  +   T        G KEREIAICNMDL+DYSHRCFCDLMF
Sbjct: 61  SYNE--PTPPLSTNSQGPKEREIAICNMDLSDYSHRCFCDLMF 101

[Close]
BLAST of Chy3G060120 vs. NCBI nr
Match: KGN62257.1 (hypothetical protein Csa_018780 [Cucumis sativus])

HSP 1 Score: 150 bits (378), Expect = 1.17e-44
Identity = 80/103 (77.67%), Postives = 82/103 (79.61%), Query Frame = 0 

Query: 1   MCHVIEEKLELNRQKLRGMGNIKSSPTLRKRIKTDIETVKRLSFITTLLDPVRLLHQNQY 60
           M HVI EKLELN QKLRG GNIKSSP LRKRIK DIE VKRLSFITTLLDPVRLLHQNQY
Sbjct: 1   MRHVINEKLELNGQKLRGTGNIKSSPALRKRIKNDIEPVKRLSFITTLLDPVRLLHQNQY 60

Query: 61  SKLQ*GNTTFKYKFRLGLKEREIAICNMDLADYSHRCFCDLMF 103
           S  +   T        G KEREIAICNMDL+DYSHRCFCDLMF
Sbjct: 61  SYNE--PTPPLSTNSQGPKEREIAICNMDLSDYSHRCFCDLMF 101

The following BLAST results are available for this feature:
BLAST of Chy3G060120 vs.
Match NameE-valueIdentityDescription
BLAST of Chy3G060120 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LN751.1e-3277.67Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G345980 PE=4 SV=1[more]
BLAST of Chy3G060120 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN62257.11.17e-4477.67hypothetical protein Csa_018780 [Cucumis sativus][more]
BLAST of Chy3G060120 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Chy3G060120.1Chy3G060120.1mRNA