Chy3G059820 (gene) Cucumber (hystrix) v1

Overview


Name	Chy3G059820
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	RNA-binding protein 24-A
Location	chrH03: 13542400 .. 13545117 (+)
RNA-Seq Expression	Chy3G059820
Synteny	Chy3G059820

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTATCAGCATGGTCCGGGTCCTAGTTCCATATCTGGATCAAGTTCGAGTTCTGGGTTCCTGAACTCTCCTTTTGGTGATACCACTTACACCAAGGTCTTTGTTGGTGGGTTGGCATGGGAGACTCAGAGCGAGACTATGAGGCGGTACTTTGAGCAGTTTGGGGAGATTCTTGAGGCTGTTGTTATAACGGATAAGAATACAGGGAGATCCAAAGGATATGGTTTTGTGAGTATTAATGATTTTTACTTTAATGGGTTTTTGTTAACTTTATACTTTTGTTTCTACTTTCTAAAAGTAATAGCCCAAGAACATTCGTTTTGACATCCTTTCTTTTCTAGCAAGCTAGTCGTATCTAATTGTTTGATCATTAATATCTATATTGTTGACATTGGAATGACCTGAACGTTTGTTCCTGTTTACATGGAGGGTTTTAGGTGACTTTCCGGGATCCAGAGTCTGCTAGAAGAGCTTGTGCAGACCCTACTCCAATTATTGATGGCAGGCGAGCAAATTGTAATCTAGCTTCACTTGGCCGGCCTCGCCCACCTTTATCTTATGGTATTATTCACTTATTTGATCTTTTATTGCTCAGCAAATCATATTGCTAGTTCCTGTCATGTGTATTTTTGTATGATCGGGGATTTTTCTTGGCATGTGCATTTTGTTCAAAGGAATTAATGTTCACAAATTCCTGTTTTCAGTTTTTTAAAGCTCTAGATCAGTAGGTCTTTACTTTTACACTGCTGTTTCTTACAGGAACAGGACGTTTAAGACAACCTGCAGTTTATGTTGGAGGGATGCAACCCAACAGGGGAACTTATATTGGAAATTTTGGCTATCAACAACCGGTGTCCTATGCTTATCAGCAGGGACTTGCATATCCTCCTTATGGGTATGTCTCTGAGGGTCTTTGTTGTGCATCCAGACCTGCCGATATATTCAAATTTTGTTATTTTAAAACTCAATCTTTTGTGTTTTGCATTCCTATATCACGACCTTTGCATTTTGTATTATGACTCTGTGGGGATTTGTTCGCTTTCAGAAGTTCGAAATTATGATATTTTATTTATTTTTCTTTTCTGATTGCCATTAAATCTTATAGCAAATGAATGGTATCGTCTAGTTACTTTAGATGTAAATATATGCTTTCAGGTTGGGTGTTTCATTTTTTGTGGACAGTAACCTTGCCTTTTCTTTTGGACCTTATATCCTAGTTTTCATTGTTTCTTAACATGGTTCATAGATACCACTTGGTTGGTATACATTCCCGGCACTGCCAACTTAATGTTAGTATTTTTCTTTGAAGTCACAAGGTATATTACCAATCACTACATGCAGCATTCCTTAGGATATGTTTCTTTGTCACCTCCCAGAAATCAGGATTGGTACCTGATGAGTGATGTGGCACAGTGTGATTGGTAATTGCAGGAATACCATAGAAGTTATATGAGGATATGTGCCAAGACTAATGTAATTGAACGGGAAGAAGCATGGCTAGTATTATTGGAGAAGTTTCATATCTTGTTTTCTCTTGCGTTTTATAGTTTATATTAAAAGTCAAGTTGGTAGGATTTGAACTCTAGTCTCTTGTTAATTGGGGTACCAAATATTTGCTTCTGGTATCACAATGGACTGTGGGTTGTTAAACATTTCCTCCTGTTAAGTTTGCATTGTTCTGTTTGTGCTACTACTTAAATTTCTGCTTTCATAATCCTATCGCTTGGAAATATTTAAAATGTTTTCAATTATTCGTTTCTTTTGCAGTTATGCTACTTACGGACCTGAGTATGTCTACCCGCAGGTATCACTGTTGGTATATTTACTTATGTCTGCAATTTTGTGTTTGGAGGGTGGATTTGGAAGTAGGGAAGGGTGATATGATGGGTGTCCTTAGAAATTTCTCAAGGTTTTTGATAGTTCTAGCATAATATGCTCAGTGGGTTTGATTTTCTGTGTCTTGTATCCTTTGTCTAGGGTGGATACAACCCTTTTGTGGGTCAGCAATACCTGCAGATTTATGGAGTGCCTGGGTCAGCAAGCCCTACAATTTATCATTATGGACAATTAGGTCAAACAGTCCCTGGTAGTCATGGTTATGGAGCAGTACATGGATATGCGATGCCAAGTCCTCAGATTTTGCAGTTTAGTGGTCCTAATGTTAATGCATTAACATCTTCTCCAATGCCTACTATTCAGGCACCATATCCTTCAGGTATTTTATGGGGACAGTGAAGATTTGCTTTTTTTTTTTGGTTGTGAAAACTTCTTTCATTCTAAAGGAATGAAAGTGCATGTTTGCAACAGAAGGGGAAGCCATTTATGGGGATATTGGATTTCGTGCTATATTTTTTATCATCTGATGTAGAATGGGGAAAACTAAAATAATATGGTTTGGCATGTGAAGACATGCTTGATTAGAAAAACATGTTTGTATCATCAGGGATTCCAGCACCTGTTGCAGCACAGCCACAGTTCGTTGTTCATTCTCCTTCTCAGTTTGTACAAGGTAGCGGTTCTGACCAAACATCTGGGTGAGGAGTTGATCAGGTAAACTTCAAAATTTTCTGTTAATAATTAATATTTAAAATTGCCCTTCCTATCTTATCACTAGCAGTCTCTAACTGCAATTTGATTACATTTATAGGTATCGATAGATTGCAGCAGGACTTAGAGCAGCGGAACTGCTACTTGAGTGGCGGGCTTCGGATCTAG

mRNA sequence

ATGGCTTATCAGCATGGTCCGGGTCCTAGTTCCATATCTGGATCAAGTTCGAGTTCTGGGTTCCTGAACTCTCCTTTTGGTGATACCACTTACACCAAGGTCTTTGTTGGTGGGTTGGCATGGGAGACTCAGAGCGAGACTATGAGGCGGTACTTTGAGCAGTTTGGGGAGATTCTTGAGGCTGTTGTTATAACGGATAAGAATACAGGGAGATCCAAAGGATATGGTTTTGTGACTTTCCGGGATCCAGAGTCTGCTAGAAGAGCTTGTGCAGACCCTACTCCAATTATTGATGGCAGGCGAGCAAATTGTAATCTAGCTTCACTTGGCCGGCCTCGCCCACCTTTATCTTATGGAACAGGACGTTTAAGACAACCTGCAGTTTATGTTGGAGGGATGCAACCCAACAGGGGAACTTATATTGGAAATTTTGGCTATCAACAACCGGTGTCCTATGCTTATCAGCAGGGACTTGCATATCCTCCTTATGGTTATGCTACTTACGGACCTGAGTATGTCTACCCGCAGGGTGGATACAACCCTTTTGTGGGTCAGCAATACCTGCAGATTTATGGAGTGCCTGGGTCAGCAAGCCCTACAATTTATCATTATGGACAATTAGGTCAAACAGTCCCTGGTAGTCATGGTTATGGAGCAGTACATGGATATGCGATGCCAAGTCCTCAGATTTTGCAGTTTAGTGGTCCTAATGTTAATGCATTAACATCTTCTCCAATGCCTACTATTCAGGCACCATATCCTTCAGGGATTCCAGCACCTGTTGCAGCACAGCCACAGTTCGTTGTTCATTCTCCTTCTCAGTTTGTACAAGGTATCGATAGATTGCAGCAGGACTTAGAGCAGCGGAACTGCTACTTGAGTGGCGGGCTTCGGATCTAG

Coding sequence (CDS)

ATGGCTTATCAGCATGGTCCGGGTCCTAGTTCCATATCTGGATCAAGTTCGAGTTCTGGGTTCCTGAACTCTCCTTTTGGTGATACCACTTACACCAAGGTCTTTGTTGGTGGGTTGGCATGGGAGACTCAGAGCGAGACTATGAGGCGGTACTTTGAGCAGTTTGGGGAGATTCTTGAGGCTGTTGTTATAACGGATAAGAATACAGGGAGATCCAAAGGATATGGTTTTGTGACTTTCCGGGATCCAGAGTCTGCTAGAAGAGCTTGTGCAGACCCTACTCCAATTATTGATGGCAGGCGAGCAAATTGTAATCTAGCTTCACTTGGCCGGCCTCGCCCACCTTTATCTTATGGAACAGGACGTTTAAGACAACCTGCAGTTTATGTTGGAGGGATGCAACCCAACAGGGGAACTTATATTGGAAATTTTGGCTATCAACAACCGGTGTCCTATGCTTATCAGCAGGGACTTGCATATCCTCCTTATGGTTATGCTACTTACGGACCTGAGTATGTCTACCCGCAGGGTGGATACAACCCTTTTGTGGGTCAGCAATACCTGCAGATTTATGGAGTGCCTGGGTCAGCAAGCCCTACAATTTATCATTATGGACAATTAGGTCAAACAGTCCCTGGTAGTCATGGTTATGGAGCAGTACATGGATATGCGATGCCAAGTCCTCAGATTTTGCAGTTTAGTGGTCCTAATGTTAATGCATTAACATCTTCTCCAATGCCTACTATTCAGGCACCATATCCTTCAGGGATTCCAGCACCTGTTGCAGCACAGCCACAGTTCGTTGTTCATTCTCCTTCTCAGTTTGTACAAGGTATCGATAGATTGCAGCAGGACTTAGAGCAGCGGAACTGCTACTTGAGTGGCGGGCTTCGGATCTAG

Protein sequence

MAYQHGPGPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPESARRACADPTPIIDGRRANCNLASLGRPRPPLSYGTGRLRQPAVYVGGMQPNRGTYIGNFGYQQPVSYAYQQGLAYPPYGYATYGPEYVYPQGGYNPFVGQQYLQIYGVPGSASPTIYHYGQLGQTVPGSHGYGAVHGYAMPSPQILQFSGPNVNALTSSPMPTIQAPYPSGIPAPVAAQPQFVVHSPSQFVQGIDRLQQDLEQRNCYLSGGLRI*

Homology

[Close]

BLAST of Chy3G059820 vs. ExPASy Swiss-Prot
Match: Q9M1S3 (Probable RNA-binding protein ARP1 OS=Arabidopsis thaliana OX=3702 GN=ARP1 PE=2 SV=1)

HSP 1 Score: 132.9 bits (333), Expect = 6.1e-30
Identity = 110/292 (37.67%), Postives = 141/292 (48.29%), Query Frame = 0


Query: 17  SSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYG 76
           ++S  +N  FGDT  TKVFVGGLAW+T  E M  +F ++G+ILEAV+I+DK T RSKGYG
Sbjct: 2   TTSNNVNGCFGDTKLTKVFVGGLAWDTHKEAMYDHFIKYGDILEAVIISDKLTRRSKGYG 61

Query: 77  FVTFRDPESARRACADPTPIIDGRRANCNLASLGRPRPPLSYGTGRLRQPAVYV----GG 136
           FVTF+D ++A RAC D TPII+GRRANCNLASLG          GRLR+         G 
Sbjct: 62  FVTFKDAKAATRACEDSTPIINGRRANCNLASLG----------GRLRKSPTMTSPQQGP 121

Query: 137 MQPNRGT--YIGNFG-YQQPVSYAYQQ-----GLAYPPYGYATYGPEYVYPQGGYNP--- 196
              NR T  ++GN   +  P  +  QQ       A P YGY +    YV P   +N    
Sbjct: 122 KNGNRATPPHVGNHSQWYYPSGFTNQQHQQQNHQAVPFYGYPS---AYVAPNMTFNQKVG 181

Query: 197 FVGQQYLQIYGVPGSASPTIYHYGQLGQTVPGSHGYGAVHGYAMPSPQIL---QFSGPNV 256
           +VG  Y+  Y            Y Q+ Q  P S           P PQ      + G  V
Sbjct: 182 YVGGTYMNGY------------YAQM-QPQPQS----------QPQPQYYHHHMYGGGRV 241

Query: 257 NALTSSPMPTIQAPYP------SGIPAPVAAQPQFVVHSPSQFVQGIDRLQQ 285
               +SPM      YP       G P P  ++P      P     G + +Q+
Sbjct: 242 MVGAASPMVPFYTVYPYHQSQAIGFPQPSFSKPLSFSTPPISGTVGGESIQK 257

[Close]

BLAST of Chy3G059820 vs. ExPASy Swiss-Prot
Match: Q6GQD3 (RNA-binding protein 24-A OS=Xenopus laevis OX=8355 GN=rbm24-a PE=2 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 4.0e-29
Identity = 84/217 (38.71%), Postives = 104/217 (47.93%), Query Frame = 0


Query: 28  DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPESAR 87
           DTTYTK+FVGGL + T   ++R+YFE FG+I EAVVITD+ TG+S+GYGFVT  D  +A 
Sbjct: 7   DTTYTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66

Query: 88  RACADPTPIIDGRRANCNLASLGRPRPPLSYGTGRLRQPAVYVGGMQPNRGTYIGNFGYQ 147
           RAC DP PIIDGR+AN NLA LG           R+ QP    G  Q +       FG  
Sbjct: 67  RACKDPNPIIDGRKANVNLAYLG--------AKPRIMQPGFAFGVQQIHPALIQRPFGI- 126

Query: 148 QPVSYAYQQGLAYPPYGYATYGPEYVYPQGGYNPFVGQQYLQIYGVPGSASPTIYHYGQL 207
            P  Y Y Q    P        P        Y  +    Y Q      +A+   Y Y   
Sbjct: 127 -PAHYVYPQAYVQPGVVIPHVQPTAATSTSPYIDYTSAAYAQYSAAAAAAAYDQYPYA-- 186

Query: 208 GQTVPGSHGYGAVHGYAMPSPQILQFSGPNVNALTSS 245
               P + GY    GY    PQ L  + P   A  ++
Sbjct: 187 --ASPAATGYVTAAGYGYAVPQPLTAAAPGSAAAAAA 209

[Close]

BLAST of Chy3G059820 vs. ExPASy Swiss-Prot
Match: Q9BX46 (RNA-binding protein 24 OS=Homo sapiens OX=9606 GN=RBM24 PE=1 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 1.5e-28
Identity = 87/222 (39.19%), Postives = 108/222 (48.65%), Query Frame = 0


Query: 28  DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPESAR 87
           DTTYTK+FVGGL + T   ++R+YFE FGEI EAVVITD+ TG+S+GYGFVT  D  +A 
Sbjct: 7   DTTYTKIFVGGLPYHTTDASLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66

Query: 88  RACADPTPIIDGRRANCNLASLGRPRPPLSYGTGRLRQPAVYVGGMQPNRGTYIGNFGYQ 147
           RAC DP PIIDGR+AN NLA LG           R+ QP    G  Q +       FG  
Sbjct: 67  RACKDPNPIIDGRKANVNLAYLG--------AKPRIMQPGFAFGVQQLHPALIQRPFGI- 126

Query: 148 QPVSYAYQQGLAYP----PYGYATYGPEYVYPQGGYNPFVGQQYLQIYGVPGSASPTIYH 207
            P  Y Y Q    P    P+   T       P   Y  + G  Y Q Y    +A+     
Sbjct: 127 -PAHYVYPQAFVQPGVVIPHVQPTAAAASTTP---YIDYTGAAYAQ-YSAAAAAAAAAAA 186

Query: 208 YGQLGQTV-PGSHGYGAVHGYAMPSPQILQFSGPNVNALTSS 245
           Y Q      P + GY    GY     Q +  + P   A  ++
Sbjct: 187 YDQYPYAASPAAAGYVTAGGYGYAVQQPITAAAPGTAAAAAA 214

[Close]

BLAST of Chy3G059820 vs. ExPASy Swiss-Prot
Match: D3Z4I3 (RNA-binding protein 24 OS=Mus musculus OX=10090 GN=Rbm24 PE=1 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 2.6e-28
Identity = 86/222 (38.74%), Postives = 109/222 (49.10%), Query Frame = 0


Query: 28  DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPESAR 87
           DTTYTK+FVGGL + T   ++R+YFE FG+I EAVVITD+ TG+S+GYGFVT  D  +A 
Sbjct: 7   DTTYTKIFVGGLPYHTTDASLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66

Query: 88  RACADPTPIIDGRRANCNLASLGRPRPPLSYGTGRLRQPAVYVGGMQPNRGTYIGNFGYQ 147
           RAC DP PIIDGR+AN NLA LG           R+ QP    G  Q +       FG  
Sbjct: 67  RACKDPNPIIDGRKANVNLAYLG--------AKPRIMQPGFAFGVQQLHPALIQRPFGI- 126

Query: 148 QPVSYAYQQGLAYP----PYGYATYGPEYVYPQGGYNPFVGQQYLQIYGVPGSASPTIYH 207
            P  Y Y Q    P    P+   T       P   Y  + G  Y Q Y    +A+     
Sbjct: 127 -PAHYVYPQAFVQPGVVIPHVQPTAAAASTTP---YIDYTGAAYAQ-YSAAAAAAAAAAA 186

Query: 208 YGQLGQTV-PGSHGYGAVHGYAMPSPQILQFSGPNVNALTSS 245
           Y Q      P + GY    GY+    Q +  + P   A  ++
Sbjct: 187 YDQYPYAASPAAAGYVTTGGYSYAVQQPITAAAPGTAAAAAA 214

[Close]

BLAST of Chy3G059820 vs. ExPASy Swiss-Prot
Match: Q5ZMA3 (RNA-binding protein 24 OS=Gallus gallus OX=9031 GN=RBM24 PE=1 SV=2)

HSP 1 Score: 125.2 bits (313), Expect = 1.3e-27
Identity = 84/221 (38.01%), Postives = 105/221 (47.51%), Query Frame = 0


Query: 28  DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPESAR 87
           DTTYTK+FVGGL + T   ++R+YFE FG+I EAVVITD+ TG+S+GYGFVT  D  +A 
Sbjct: 7   DTTYTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66

Query: 88  RACADPTPIIDGRRANCNLASLGRPRPPLSYGTGRLRQPAVYVGGMQPNRGTYIGNFGYQ 147
           RAC DP PIIDGR+AN NLA LG           R+ QP    G  Q +       FG  
Sbjct: 67  RACKDPNPIIDGRKANVNLAYLG--------AKPRIMQPGFAFGVQQLHPALIQRPFGI- 126

Query: 148 QPVSYAYQQGLAYP----PYGYATYGPEYVYPQGGYNPFVGQQYLQIYGVPGSASPTIYH 207
            P  Y Y Q    P    P+           P  GY      QY        SA+   Y 
Sbjct: 127 -PAHYVYPQAFVQPGVVIPHVQPAAAAASTTPYIGYTGAAYAQY--------SAAAAAYE 186

Query: 208 YGQLGQTVPGSHGYGAVHGYAMPSPQILQFSGPNVNALTSS 245
                 +   + GY A  GY     Q +  + P   A  ++
Sbjct: 187 QYPYAASPAAAAGYVAAGGYGYAVQQPITAAAPGTAAAAAA 209

[Close]

BLAST of Chy3G059820 vs. ExPASy TrEMBL
Match: A0A5D3CHF9 (RNA-binding protein 24-A OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold807G00070 PE=4 SV=1)

HSP 1 Score: 567.0 bits (1460), Expect = 4.7e-158
Identity = 275/278 (98.92%), Postives = 277/278 (99.64%), Query Frame = 0


Query: 1   MAYQHGPGPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILE 60
           MAYQHGPGPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILE
Sbjct: 1   MAYQHGPGPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILE 60

Query: 61  AVVITDKNTGRSKGYGFVTFRDPESARRACADPTPIIDGRRANCNLASLGRPRPPLSYGT 120
           AVVITDKNTGRSKGYGFVTFRDPESARRACADPTPIIDGRRANCNLASLGRPRPP+S+GT
Sbjct: 61  AVVITDKNTGRSKGYGFVTFRDPESARRACADPTPIIDGRRANCNLASLGRPRPPISFGT 120

Query: 121 GRLRQPAVYVGGMQPNRGTYIGNFGYQQPVSYAYQQGLAYPPYGYATYGPEYVYPQGGYN 180
           GRLRQPAVYVGGMQPNRGTYIGNFGYQQPVSYAYQQGLAYPPYGYATYGPEYVYPQGGYN
Sbjct: 121 GRLRQPAVYVGGMQPNRGTYIGNFGYQQPVSYAYQQGLAYPPYGYATYGPEYVYPQGGYN 180

Query: 181 PFVGQQYLQIYGVPGSASPTIYHYGQLGQTVPGSHGYGAVHGYAMPSPQILQFSGPNVNA 240
           PFVGQQYLQIYGVPGSASPTIYHYGQLGQTVPG HGYGAVHGYAMPSPQILQFSGPNVNA
Sbjct: 181 PFVGQQYLQIYGVPGSASPTIYHYGQLGQTVPGGHGYGAVHGYAMPSPQILQFSGPNVNA 240

Query: 241 LTSSPMPTIQAPYPSGIPAPVAAQPQFVVHSPSQFVQG 279
           LTSSPMPTIQAPYPSGIPAPVAAQPQFVVHSPSQFVQG
Sbjct: 241 LTSSPMPTIQAPYPSGIPAPVAAQPQFVVHSPSQFVQG 278

[Close]

BLAST of Chy3G059820 vs. ExPASy TrEMBL
Match: A0A1S3CME8 (RNA-binding protein 24-A OS=Cucumis melo OX=3656 GN=LOC103502602 PE=4 SV=1)

HSP 1 Score: 567.0 bits (1460), Expect = 4.7e-158
Identity = 275/278 (98.92%), Postives = 277/278 (99.64%), Query Frame = 0


Query: 1   MAYQHGPGPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILE 60
           MAYQHGPGPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILE
Sbjct: 1   MAYQHGPGPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILE 60

Query: 61  AVVITDKNTGRSKGYGFVTFRDPESARRACADPTPIIDGRRANCNLASLGRPRPPLSYGT 120
           AVVITDKNTGRSKGYGFVTFRDPESARRACADPTPIIDGRRANCNLASLGRPRPP+S+GT
Sbjct: 61  AVVITDKNTGRSKGYGFVTFRDPESARRACADPTPIIDGRRANCNLASLGRPRPPISFGT 120

Query: 121 GRLRQPAVYVGGMQPNRGTYIGNFGYQQPVSYAYQQGLAYPPYGYATYGPEYVYPQGGYN 180
           GRLRQPAVYVGGMQPNRGTYIGNFGYQQPVSYAYQQGLAYPPYGYATYGPEYVYPQGGYN
Sbjct: 121 GRLRQPAVYVGGMQPNRGTYIGNFGYQQPVSYAYQQGLAYPPYGYATYGPEYVYPQGGYN 180

Query: 181 PFVGQQYLQIYGVPGSASPTIYHYGQLGQTVPGSHGYGAVHGYAMPSPQILQFSGPNVNA 240
           PFVGQQYLQIYGVPGSASPTIYHYGQLGQTVPG HGYGAVHGYAMPSPQILQFSGPNVNA
Sbjct: 181 PFVGQQYLQIYGVPGSASPTIYHYGQLGQTVPGGHGYGAVHGYAMPSPQILQFSGPNVNA 240

Query: 241 LTSSPMPTIQAPYPSGIPAPVAAQPQFVVHSPSQFVQG 279
           LTSSPMPTIQAPYPSGIPAPVAAQPQFVVHSPSQFVQG
Sbjct: 241 LTSSPMPTIQAPYPSGIPAPVAAQPQFVVHSPSQFVQG 278

[Close]

BLAST of Chy3G059820 vs. ExPASy TrEMBL
Match: A0A0A0KHA9 (RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G401470 PE=4 SV=1)

HSP 1 Score: 566.6 bits (1459), Expect = 6.1e-158
Identity = 276/277 (99.64%), Postives = 276/277 (99.64%), Query Frame = 0


Query: 1   MAYQHGPGPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILE 60
           MAYQHGPGPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILE
Sbjct: 1   MAYQHGPGPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILE 60

Query: 61  AVVITDKNTGRSKGYGFVTFRDPESARRACADPTPIIDGRRANCNLASLGRPRPPLSYGT 120
           AVVITDKNTGRSKGYGFVTFRDPESARRACADPTPIIDGRRANCNLASLGRPRPPLSYGT
Sbjct: 61  AVVITDKNTGRSKGYGFVTFRDPESARRACADPTPIIDGRRANCNLASLGRPRPPLSYGT 120

Query: 121 GRLRQPAVYVGGMQPNRGTYIGNFGYQQPVSYAYQQGLAYPPYGYATYGPEYVYPQGGYN 180
           GRLRQPAVYVGGMQPNRGTYIGNFGYQQPVSYAYQQGLAYPPYGYATYGPEYVYPQGGYN
Sbjct: 121 GRLRQPAVYVGGMQPNRGTYIGNFGYQQPVSYAYQQGLAYPPYGYATYGPEYVYPQGGYN 180

Query: 181 PFVGQQYLQIYGVPGSASPTIYHYGQLGQTVPGSHGYGAVHGYAMPSPQILQFSGPNVNA 240
           PFVGQQYLQIYGVPGSASPTIYHYGQLGQTVPG HGYGAVHGYAMPSPQILQFSGPNVNA
Sbjct: 181 PFVGQQYLQIYGVPGSASPTIYHYGQLGQTVPGGHGYGAVHGYAMPSPQILQFSGPNVNA 240

Query: 241 LTSSPMPTIQAPYPSGIPAPVAAQPQFVVHSPSQFVQ 278
           LTSSPMPTIQAPYPSGIPAPVAAQPQFVVHSPSQFVQ
Sbjct: 241 LTSSPMPTIQAPYPSGIPAPVAAQPQFVVHSPSQFVQ 277

[Close]

BLAST of Chy3G059820 vs. ExPASy TrEMBL
Match: A0A6J1G3W1 (RNA-binding protein 24-A OS=Cucurbita moschata OX=3662 GN=LOC111450546 PE=4 SV=1)

HSP 1 Score: 543.1 bits (1398), Expect = 7.2e-151
Identity = 265/278 (95.32%), Postives = 268/278 (96.40%), Query Frame = 0


Query: 1   MAYQHGPGPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILE 60
           MAYQHG GPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILE
Sbjct: 1   MAYQHGRGPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILE 60

Query: 61  AVVITDKNTGRSKGYGFVTFRDPESARRACADPTPIIDGRRANCNLASLGRPRPPLSYGT 120
           AVVITDKNTGRSKGYGFVTFRDPESARRAC DPTPIIDGRRANCNLASLGRPRPP+SY  
Sbjct: 61  AVVITDKNTGRSKGYGFVTFRDPESARRACVDPTPIIDGRRANCNLASLGRPRPPISY-- 120

Query: 121 GRLRQPAVYVGGMQPNRGTYIGNFGYQQPVSYAYQQGLAYPPYGYATYGPEYVYPQGGYN 180
           GRLR PAVYVGGMQPNRG YIGNFGYQQPVSYAYQQGLAYPPYGYATYGPEYVYPQGGYN
Sbjct: 121 GRLRPPAVYVGGMQPNRGNYIGNFGYQQPVSYAYQQGLAYPPYGYATYGPEYVYPQGGYN 180

Query: 181 PFVGQQYLQIYGVPGSASPTIYHYGQLGQTVPGSHGYGAVHGYAMPSPQILQFSGPNVNA 240
           PFVGQQYLQIYGVPGSASP IYHYGQLGQTVPG HGYGAVHGYAMPSPQI+QF GPNVN 
Sbjct: 181 PFVGQQYLQIYGVPGSASPAIYHYGQLGQTVPGGHGYGAVHGYAMPSPQIVQFGGPNVNP 240

Query: 241 LTSSPMPTIQAPYPSGIPAPVAAQPQFVVHSPSQFVQG 279
           LTSSPMPTIQAPYPSGIPAPVAAQPQF+VHSPSQFVQG
Sbjct: 241 LTSSPMPTIQAPYPSGIPAPVAAQPQFIVHSPSQFVQG 276

[Close]

BLAST of Chy3G059820 vs. ExPASy TrEMBL
Match: A0A6J1KGG8 (RNA-binding protein 24-A OS=Cucurbita maxima OX=3661 GN=LOC111494003 PE=4 SV=1)

HSP 1 Score: 538.9 bits (1387), Expect = 1.4e-149
Identity = 262/278 (94.24%), Postives = 266/278 (95.68%), Query Frame = 0


Query: 1   MAYQHGPGPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILE 60
           MAYQHG GPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILE
Sbjct: 1   MAYQHGRGPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILE 60

Query: 61  AVVITDKNTGRSKGYGFVTFRDPESARRACADPTPIIDGRRANCNLASLGRPRPPLSYGT 120
           AVVITDKN+GRSKGYGFVTFRDPESARRAC DPTPIIDGRRANCNLASLGRPRPP+SY  
Sbjct: 61  AVVITDKNSGRSKGYGFVTFRDPESARRACVDPTPIIDGRRANCNLASLGRPRPPISY-- 120

Query: 121 GRLRQPAVYVGGMQPNRGTYIGNFGYQQPVSYAYQQGLAYPPYGYATYGPEYVYPQGGYN 180
           GRLR PAVYVGGMQPNRG Y GNFGYQQPVSYAYQQGLAYPPYGYATYGPEYVYPQGGYN
Sbjct: 121 GRLRPPAVYVGGMQPNRGNYFGNFGYQQPVSYAYQQGLAYPPYGYATYGPEYVYPQGGYN 180

Query: 181 PFVGQQYLQIYGVPGSASPTIYHYGQLGQTVPGSHGYGAVHGYAMPSPQILQFSGPNVNA 240
           PFVGQQYLQIYGVPGSASP IYHYGQLGQTVPG HGYGAVHGY MPSPQI+QF GPNVN 
Sbjct: 181 PFVGQQYLQIYGVPGSASPAIYHYGQLGQTVPGGHGYGAVHGYTMPSPQIMQFGGPNVNP 240

Query: 241 LTSSPMPTIQAPYPSGIPAPVAAQPQFVVHSPSQFVQG 279
           LTSSPMPTIQAPYPSGIPAPVAAQPQF+VHSPSQFVQG
Sbjct: 241 LTSSPMPTIQAPYPSGIPAPVAAQPQFIVHSPSQFVQG 276

[Close]

BLAST of Chy3G059820 vs. NCBI nr
Match: XP_004146763.1 (RNA-binding protein 24-A [Cucumis sativus] >KGN48031.2 hypothetical protein Csa_003949 [Cucumis sativus])

HSP 1 Score: 567 bits (1462), Expect = 1.17e-203
Identity = 277/278 (99.64%), Postives = 277/278 (99.64%), Query Frame = 0


Query: 1   MAYQHGPGPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILE 60
           MAYQHGPGPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILE
Sbjct: 1   MAYQHGPGPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILE 60

Query: 61  AVVITDKNTGRSKGYGFVTFRDPESARRACADPTPIIDGRRANCNLASLGRPRPPLSYGT 120
           AVVITDKNTGRSKGYGFVTFRDPESARRACADPTPIIDGRRANCNLASLGRPRPPLSYGT
Sbjct: 61  AVVITDKNTGRSKGYGFVTFRDPESARRACADPTPIIDGRRANCNLASLGRPRPPLSYGT 120

Query: 121 GRLRQPAVYVGGMQPNRGTYIGNFGYQQPVSYAYQQGLAYPPYGYATYGPEYVYPQGGYN 180
           GRLRQPAVYVGGMQPNRGTYIGNFGYQQPVSYAYQQGLAYPPYGYATYGPEYVYPQGGYN
Sbjct: 121 GRLRQPAVYVGGMQPNRGTYIGNFGYQQPVSYAYQQGLAYPPYGYATYGPEYVYPQGGYN 180

Query: 181 PFVGQQYLQIYGVPGSASPTIYHYGQLGQTVPGSHGYGAVHGYAMPSPQILQFSGPNVNA 240
           PFVGQQYLQIYGVPGSASPTIYHYGQLGQTVPG HGYGAVHGYAMPSPQILQFSGPNVNA
Sbjct: 181 PFVGQQYLQIYGVPGSASPTIYHYGQLGQTVPGGHGYGAVHGYAMPSPQILQFSGPNVNA 240

Query: 241 LTSSPMPTIQAPYPSGIPAPVAAQPQFVVHSPSQFVQG 278
           LTSSPMPTIQAPYPSGIPAPVAAQPQFVVHSPSQFVQG
Sbjct: 241 LTSSPMPTIQAPYPSGIPAPVAAQPQFVVHSPSQFVQG 278

[Close]

BLAST of Chy3G059820 vs. NCBI nr
Match: XP_008464801.1 (PREDICTED: RNA-binding protein 24-A [Cucumis melo])

HSP 1 Score: 565 bits (1456), Expect = 9.60e-203
Identity = 275/278 (98.92%), Postives = 277/278 (99.64%), Query Frame = 0


Query: 1   MAYQHGPGPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILE 60
           MAYQHGPGPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILE
Sbjct: 1   MAYQHGPGPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILE 60

Query: 61  AVVITDKNTGRSKGYGFVTFRDPESARRACADPTPIIDGRRANCNLASLGRPRPPLSYGT 120
           AVVITDKNTGRSKGYGFVTFRDPESARRACADPTPIIDGRRANCNLASLGRPRPP+S+GT
Sbjct: 61  AVVITDKNTGRSKGYGFVTFRDPESARRACADPTPIIDGRRANCNLASLGRPRPPISFGT 120

Query: 121 GRLRQPAVYVGGMQPNRGTYIGNFGYQQPVSYAYQQGLAYPPYGYATYGPEYVYPQGGYN 180
           GRLRQPAVYVGGMQPNRGTYIGNFGYQQPVSYAYQQGLAYPPYGYATYGPEYVYPQGGYN
Sbjct: 121 GRLRQPAVYVGGMQPNRGTYIGNFGYQQPVSYAYQQGLAYPPYGYATYGPEYVYPQGGYN 180

Query: 181 PFVGQQYLQIYGVPGSASPTIYHYGQLGQTVPGSHGYGAVHGYAMPSPQILQFSGPNVNA 240
           PFVGQQYLQIYGVPGSASPTIYHYGQLGQTVPG HGYGAVHGYAMPSPQILQFSGPNVNA
Sbjct: 181 PFVGQQYLQIYGVPGSASPTIYHYGQLGQTVPGGHGYGAVHGYAMPSPQILQFSGPNVNA 240

Query: 241 LTSSPMPTIQAPYPSGIPAPVAAQPQFVVHSPSQFVQG 278
           LTSSPMPTIQAPYPSGIPAPVAAQPQFVVHSPSQFVQG
Sbjct: 241 LTSSPMPTIQAPYPSGIPAPVAAQPQFVVHSPSQFVQG 278

[Close]

BLAST of Chy3G059820 vs. NCBI nr
Match: KAA0045404.1 (RNA-binding protein 24-A [Cucumis melo var. makuwa] >TYK11333.1 RNA-binding protein 24-A [Cucumis melo var. makuwa])

HSP 1 Score: 565 bits (1456), Expect = 1.61e-200
Identity = 275/278 (98.92%), Postives = 277/278 (99.64%), Query Frame = 0


Query: 1   MAYQHGPGPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILE 60
           MAYQHGPGPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILE
Sbjct: 1   MAYQHGPGPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILE 60

Query: 61  AVVITDKNTGRSKGYGFVTFRDPESARRACADPTPIIDGRRANCNLASLGRPRPPLSYGT 120
           AVVITDKNTGRSKGYGFVTFRDPESARRACADPTPIIDGRRANCNLASLGRPRPP+S+GT
Sbjct: 61  AVVITDKNTGRSKGYGFVTFRDPESARRACADPTPIIDGRRANCNLASLGRPRPPISFGT 120

Query: 121 GRLRQPAVYVGGMQPNRGTYIGNFGYQQPVSYAYQQGLAYPPYGYATYGPEYVYPQGGYN 180
           GRLRQPAVYVGGMQPNRGTYIGNFGYQQPVSYAYQQGLAYPPYGYATYGPEYVYPQGGYN
Sbjct: 121 GRLRQPAVYVGGMQPNRGTYIGNFGYQQPVSYAYQQGLAYPPYGYATYGPEYVYPQGGYN 180

Query: 181 PFVGQQYLQIYGVPGSASPTIYHYGQLGQTVPGSHGYGAVHGYAMPSPQILQFSGPNVNA 240
           PFVGQQYLQIYGVPGSASPTIYHYGQLGQTVPG HGYGAVHGYAMPSPQILQFSGPNVNA
Sbjct: 181 PFVGQQYLQIYGVPGSASPTIYHYGQLGQTVPGGHGYGAVHGYAMPSPQILQFSGPNVNA 240

Query: 241 LTSSPMPTIQAPYPSGIPAPVAAQPQFVVHSPSQFVQG 278
           LTSSPMPTIQAPYPSGIPAPVAAQPQFVVHSPSQFVQG
Sbjct: 241 LTSSPMPTIQAPYPSGIPAPVAAQPQFVVHSPSQFVQG 278

[Close]

BLAST of Chy3G059820 vs. NCBI nr
Match: XP_022946505.1 (RNA-binding protein 24-A [Cucurbita moschata] >XP_022946506.1 RNA-binding protein 24-A [Cucurbita moschata])

HSP 1 Score: 541 bits (1395), Expect = 1.77e-193
Identity = 265/278 (95.32%), Postives = 268/278 (96.40%), Query Frame = 0


Query: 1   MAYQHGPGPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILE 60
           MAYQHG GPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILE
Sbjct: 1   MAYQHGRGPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILE 60

Query: 61  AVVITDKNTGRSKGYGFVTFRDPESARRACADPTPIIDGRRANCNLASLGRPRPPLSYGT 120
           AVVITDKNTGRSKGYGFVTFRDPESARRAC DPTPIIDGRRANCNLASLGRPRPP+SY  
Sbjct: 61  AVVITDKNTGRSKGYGFVTFRDPESARRACVDPTPIIDGRRANCNLASLGRPRPPISY-- 120

Query: 121 GRLRQPAVYVGGMQPNRGTYIGNFGYQQPVSYAYQQGLAYPPYGYATYGPEYVYPQGGYN 180
           GRLR PAVYVGGMQPNRG YIGNFGYQQPVSYAYQQGLAYPPYGYATYGPEYVYPQGGYN
Sbjct: 121 GRLRPPAVYVGGMQPNRGNYIGNFGYQQPVSYAYQQGLAYPPYGYATYGPEYVYPQGGYN 180

Query: 181 PFVGQQYLQIYGVPGSASPTIYHYGQLGQTVPGSHGYGAVHGYAMPSPQILQFSGPNVNA 240
           PFVGQQYLQIYGVPGSASP IYHYGQLGQTVPG HGYGAVHGYAMPSPQI+QF GPNVN 
Sbjct: 181 PFVGQQYLQIYGVPGSASPAIYHYGQLGQTVPGGHGYGAVHGYAMPSPQIVQFGGPNVNP 240

Query: 241 LTSSPMPTIQAPYPSGIPAPVAAQPQFVVHSPSQFVQG 278
           LTSSPMPTIQAPYPSGIPAPVAAQPQF+VHSPSQFVQG
Sbjct: 241 LTSSPMPTIQAPYPSGIPAPVAAQPQFIVHSPSQFVQG 276

[Close]

BLAST of Chy3G059820 vs. NCBI nr
Match: KAG6599081.1 (putative RNA-binding protein ARP1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 541 bits (1395), Expect = 2.22e-192
Identity = 265/278 (95.32%), Postives = 268/278 (96.40%), Query Frame = 0


Query: 1   MAYQHGPGPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILE 60
           MAYQHG GPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILE
Sbjct: 1   MAYQHGRGPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILE 60

Query: 61  AVVITDKNTGRSKGYGFVTFRDPESARRACADPTPIIDGRRANCNLASLGRPRPPLSYGT 120
           AVVITDKNTGRSKGYGFVTFRDPESARRAC DPTPIIDGRRANCNLASLGRPRPP+SY  
Sbjct: 61  AVVITDKNTGRSKGYGFVTFRDPESARRACVDPTPIIDGRRANCNLASLGRPRPPISY-- 120

Query: 121 GRLRQPAVYVGGMQPNRGTYIGNFGYQQPVSYAYQQGLAYPPYGYATYGPEYVYPQGGYN 180
           GRLR PAVYVGGMQPNRG YIGNFGYQQPVSYAYQQGLAYPPYGYATYGPEYVYPQGGYN
Sbjct: 121 GRLRPPAVYVGGMQPNRGNYIGNFGYQQPVSYAYQQGLAYPPYGYATYGPEYVYPQGGYN 180

Query: 181 PFVGQQYLQIYGVPGSASPTIYHYGQLGQTVPGSHGYGAVHGYAMPSPQILQFSGPNVNA 240
           PFVGQQYLQIYGVPGSASP IYHYGQLGQTVPG HGYGAVHGYAMPSPQI+QF GPNVN 
Sbjct: 181 PFVGQQYLQIYGVPGSASPAIYHYGQLGQTVPGGHGYGAVHGYAMPSPQIVQFGGPNVNP 240

Query: 241 LTSSPMPTIQAPYPSGIPAPVAAQPQFVVHSPSQFVQG 278
           LTSSPMPTIQAPYPSGIPAPVAAQPQF+VHSPSQFVQG
Sbjct: 241 LTSSPMPTIQAPYPSGIPAPVAAQPQFIVHSPSQFVQG 276

[Close]

BLAST of Chy3G059820 vs. TAIR 10
Match: AT1G76460.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 368.6 bits (945), Expect = 4.7e-102
Identity = 186/284 (65.49%), Postives = 217/284 (76.41%), Query Frame = 0


Query: 1   MAYQHGPGPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILE 60
           MAYQ  PG        S   +LNSPFGDTT+TKVFVGGLAWETQSET+R++FEQ+GEILE
Sbjct: 1   MAYQPVPG--------SGFHYLNSPFGDTTFTKVFVGGLAWETQSETLRQHFEQYGEILE 60

Query: 61  AVVITDKNTGRSKGYGFVTFRDPESARRACADPTPIIDGRRANCNLASLGRPRPPLSYGT 120
           AVVI DKNTGRSKGYGFVTFRDPE+ARRACADPTPIIDGRRANCNLASLGRPRPPL Y  
Sbjct: 61  AVVIADKNTGRSKGYGFVTFRDPEAARRACADPTPIIDGRRANCNLASLGRPRPPLPYAV 120

Query: 121 -----GRLRQPAVYVGGMQPNRGTYIGNFGYQQPVSYAYQQGLAYPPYGYATYGPEYVY- 180
                GRLR  + Y+G +Q  RG+ IGN+ YQQP+ Y YQQG+ Y PYG   YGPEY+Y 
Sbjct: 121 IPNMPGRLRPASPYIGNVQGPRGSLIGNYPYQQPLPYNYQQGVVY-PYGVTAYGPEYMYS 180

Query: 181 -PQGGYNPFVGQQYLQIYGVPGSASPTIYHYGQLGQTVPGSHGYGAVHGYAMPSPQILQF 240
             QG Y+P++GQQYLQ+YGVPG+ +  +Y YGQL QT+P  HGY AV GY++P   ILQ 
Sbjct: 181 QSQGLYSPYMGQQYLQVYGVPGAVNSPVYQYGQLSQTIPNGHGYTAVQGYSVPGSHILQL 240

Query: 241 SGPNVNALTSSPMPTIQAPYPSGIPAPVAAQPQFVVHSPSQFVQ 278
            GP V+ +T+S MP +QAPYPSGIP P   Q   +VHSP QF+Q
Sbjct: 241 GGPTVSTMTTSSMPALQAPYPSGIPGPAPVQSHIIVHSP-QFMQ 274

[Close]

BLAST of Chy3G059820 vs. TAIR 10
Match: AT1G20880.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 317.0 bits (811), Expect = 1.6e-86
Identity = 166/272 (61.03%), Postives = 200/272 (73.53%), Query Frame = 0


Query: 15  SSSSSGF--LNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRS 74
           S  SSGF  LNSPFGDTT+TKVFVGGLAWETQSET+RR+F+Q+G+ILEAVVITDKNTGRS
Sbjct: 5   SIPSSGFHYLNSPFGDTTFTKVFVGGLAWETQSETLRRHFDQYGDILEAVVITDKNTGRS 64

Query: 75  KGYGFVTFRDPESARRACADPTPIIDGRRANCNLASLGRPRPPLSYGT-----GRLRQPA 134
           KGYGFVTFRDPE+ARRAC DPTPIIDGRRANCNLASLGR RPP+ Y       GR+R P+
Sbjct: 65  KGYGFVTFRDPEAARRACVDPTPIIDGRRANCNLASLGRSRPPMQYAVIPHAPGRVRPPS 124

Query: 135 VYVGGMQPNRGTYIGNFGYQQPVSYAYQQGLAYPPYGYATYGPEYVY--PQGGYNPFVGQ 194
            YVG +Q  RG + G+  Y QP +Y YQQG+ Y PYG   YGP+Y+Y   QG Y P++GQ
Sbjct: 125 PYVGSVQSPRGLHFGSHPYHQPPTYNYQQGVVY-PYGVTPYGPDYMYSQSQGFYGPYMGQ 184

Query: 195 QYLQIYGVPGSASPTIYHYGQLGQTVPGSHGYGAVHGYAMPSPQILQFSGPNVNALTSSP 254
           QYLQ+YGVPG+ +   Y YGQL  T+PG+HGY A  GY+ P   +LQ          +SP
Sbjct: 185 QYLQVYGVPGAVNSPGYQYGQLSHTIPGAHGYTAGQGYSHPGSHVLQLG-------ATSP 244

Query: 255 MPTIQAPYPSGIPAPVAAQPQFVVHSPSQFVQ 278
           M  IQ+PYPS  P+    Q + +V +P Q++Q
Sbjct: 245 MSAIQSPYPS--PSAPTHQ-RVIVQTPPQYIQ 265

[Close]

BLAST of Chy3G059820 vs. TAIR 10
Match: AT1G20880.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 317.0 bits (811), Expect = 1.6e-86
Identity = 166/272 (61.03%), Postives = 200/272 (73.53%), Query Frame = 0


Query: 15  SSSSSGF--LNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRS 74
           S  SSGF  LNSPFGDTT+TKVFVGGLAWETQSET+RR+F+Q+G+ILEAVVITDKNTGRS
Sbjct: 5   SIPSSGFHYLNSPFGDTTFTKVFVGGLAWETQSETLRRHFDQYGDILEAVVITDKNTGRS 64

Query: 75  KGYGFVTFRDPESARRACADPTPIIDGRRANCNLASLGRPRPPLSYGT-----GRLRQPA 134
           KGYGFVTFRDPE+ARRAC DPTPIIDGRRANCNLASLGR RPP+ Y       GR+R P+
Sbjct: 65  KGYGFVTFRDPEAARRACVDPTPIIDGRRANCNLASLGRSRPPMQYAVIPHAPGRVRPPS 124

Query: 135 VYVGGMQPNRGTYIGNFGYQQPVSYAYQQGLAYPPYGYATYGPEYVY--PQGGYNPFVGQ 194
            YVG +Q  RG + G+  Y QP +Y YQQG+ Y PYG   YGP+Y+Y   QG Y P++GQ
Sbjct: 125 PYVGSVQSPRGLHFGSHPYHQPPTYNYQQGVVY-PYGVTPYGPDYMYSQSQGFYGPYMGQ 184

Query: 195 QYLQIYGVPGSASPTIYHYGQLGQTVPGSHGYGAVHGYAMPSPQILQFSGPNVNALTSSP 254
           QYLQ+YGVPG+ +   Y YGQL  T+PG+HGY A  GY+ P   +LQ          +SP
Sbjct: 185 QYLQVYGVPGAVNSPGYQYGQLSHTIPGAHGYTAGQGYSHPGSHVLQLG-------ATSP 244

Query: 255 MPTIQAPYPSGIPAPVAAQPQFVVHSPSQFVQ 278
           M  IQ+PYPS  P+    Q + +V +P Q++Q
Sbjct: 245 MSAIQSPYPS--PSAPTHQ-RVIVQTPPQYIQ 265

[Close]

BLAST of Chy3G059820 vs. TAIR 10
Match: AT1G22330.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 196.4 bits (498), Expect = 3.2e-50
Identity = 127/260 (48.85%), Postives = 150/260 (57.69%), Query Frame = 0


Query: 17  SSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYG 76
           S++ +  SPFGDTT+TKVFVGGLAWET ++ MRRYF+QFGEILEAV+ITDK TG+SKGYG
Sbjct: 2   SNTSYYRSPFGDTTHTKVFVGGLAWETPTDEMRRYFDQFGEILEAVIITDKATGKSKGYG 61

Query: 77  FVTFRDPESARRACADPTPIIDGRRANCNLASLGRPRPPLSYGTGRLRQPAVYVGGMQPN 136
           FVTFRD +SA RA ADP P+IDGR+ANCN+AS GRPRP    G G+   P+ Y GG Q +
Sbjct: 62  FVTFRDSDSATRAVADPNPVIDGRKANCNIASFGRPRPSTPRGRGQGGSPSQYQGGGQSS 121

Query: 137 RGTYIGNFGYQQPVSYAYQQGLAYPPYGYATYGPEYVYPQGGYNPFVGQ-QYL--QIYGV 196
                   G   PV  A    L YP YGY TY  EY Y Q  YN  + Q QY   Q+YG 
Sbjct: 122 ------YTGMAAPVQQAAAAQLMYPSYGY-TYNSEYGYHQALYNAQLQQAQYYQQQMYGG 181

Query: 197 PGSASPTI-------YHYGQLGQTVPGSH---GYGAVH--------GYAMPSPQILQFSG 256
            G+ SP+        Y+Y Q     P  H    Y   H           +PS        
Sbjct: 182 GGATSPSSSNIMPSPYYYLQAPSPRPYLHHQQHYQYHHHQQQQQQQQQRLPSASSYLIYP 241

[Close]

BLAST of Chy3G059820 vs. TAIR 10
Match: AT1G78260.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 190.7 bits (483), Expect = 1.8e-48
Identity = 124/252 (49.21%), Postives = 148/252 (58.73%), Query Frame = 0


Query: 17  SSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYG 76
           S + +  SPFGDTTYTKVFVGGLAWET ++ MRRYFEQFGEILEAV+ITDKNTG+SKGYG
Sbjct: 2   SQTSYYRSPFGDTTYTKVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYG 61

Query: 77  FVTFRDPESARRACADPTPIIDGRRANCNLASLGRPRPPLSYGTGRLRQPAVYVGGMQPN 136
           FVTFR+ +SA RA ADP P+IDGR+ANCN+AS GRPRP    G G+   P+ Y  G    
Sbjct: 62  FVTFRESDSATRAVADPNPVIDGRKANCNIASFGRPRPSPPRGRGQTGSPSQYQSG---G 121

Query: 137 RGTYIGNFGYQQPVSYAYQQGLAYPPYGYATYGP-EYVYPQGGYNPFVG-----QQYLQI 196
             TY    G   P+  A    L YP YGY TY P ++ Y Q  YN  +      QQ  Q+
Sbjct: 122 PSTYT---GMAAPLPPAAAPQLMYPSYGY-TYNPDQFGYHQALYNTQLQQAQYYQQQQQL 181

Query: 197 YG----VPGSASPTI----YHYGQLGQT--VPGSHGYGAVHGYAMPSPQILQFSGPN--V 251
           YG     P S+  TI    Y+YG   Q   VP  H +     Y        +FS P+  V
Sbjct: 182 YGGGATSPSSSGATIMPSPYYYGYSLQAPRVPYQHHHHLPQPYNPQQHHHQRFSSPSFLV 241

The following BLAST results are available for this feature:

BLAST of Chy3G059820 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9M1S3	6.1e-30	37.67	Probable RNA-binding protein ARP1 OS=Arabidopsis thaliana OX=3702 GN=ARP1 PE=2 S...	[more]
Q6GQD3	4.0e-29	38.71	RNA-binding protein 24-A OS=Xenopus laevis OX=8355 GN=rbm24-a PE=2 SV=1	[more]
Q9BX46	1.5e-28	39.19	RNA-binding protein 24 OS=Homo sapiens OX=9606 GN=RBM24 PE=1 SV=1	[more]
D3Z4I3	2.6e-28	38.74	RNA-binding protein 24 OS=Mus musculus OX=10090 GN=Rbm24 PE=1 SV=1	[more]
Q5ZMA3	1.3e-27	38.01	RNA-binding protein 24 OS=Gallus gallus OX=9031 GN=RBM24 PE=1 SV=2	[more]

BLAST of Chy3G059820 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CHF9	4.7e-158	98.92	RNA-binding protein 24-A OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]
A0A1S3CME8	4.7e-158	98.92	RNA-binding protein 24-A OS=Cucumis melo OX=3656 GN=LOC103502602 PE=4 SV=1	[more]
A0A0A0KHA9	6.1e-158	99.64	RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G401470 PE=4 SV...	[more]
A0A6J1G3W1	7.2e-151	95.32	RNA-binding protein 24-A OS=Cucurbita moschata OX=3662 GN=LOC111450546 PE=4 SV=1	[more]
A0A6J1KGG8	1.4e-149	94.24	RNA-binding protein 24-A OS=Cucurbita maxima OX=3661 GN=LOC111494003 PE=4 SV=1	[more]

BLAST of Chy3G059820 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004146763.1	1.17e-203	99.64	RNA-binding protein 24-A [Cucumis sativus] >KGN48031.2 hypothetical protein Csa_...	[more]
XP_008464801.1	9.60e-203	98.92	PREDICTED: RNA-binding protein 24-A [Cucumis melo]	[more]
KAA0045404.1	1.61e-200	98.92	RNA-binding protein 24-A [Cucumis melo var. makuwa] >TYK11333.1 RNA-binding prot...	[more]
XP_022946505.1	1.77e-193	95.32	RNA-binding protein 24-A [Cucurbita moschata] >XP_022946506.1 RNA-binding protei...	[more]
KAG6599081.1	2.22e-192	95.32	putative RNA-binding protein ARP1, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Chy3G059820 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G76460.1	4.7e-102	65.49	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G20880.1	1.6e-86	61.03	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G20880.2	1.6e-86	61.03	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G22330.1	3.2e-50	48.85	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G78260.2	1.8e-48	49.21	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 33..105 e-value: 1.8E-24 score: 97.3
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 34..90 e-value: 2.5E-17 score: 62.5
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 32..109 score: 17.114126
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 9..123 e-value: 1.9E-25 score: 91.4
IPR037366	BOULE/DAZ family	PANTHER	PTHR11176	BOULE-RELATED	coord: 1..279
None	No IPR available	PANTHER	PTHR11176:SF32	RNA-BINDING PROTEIN 38-LIKE ISOFORM X1	coord: 1..279
None	No IPR available	CDD	cd12384	RRM_RBM24_RBM38_like	coord: 32..107 e-value: 3.57853E-46 score: 148.532
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 31..147

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy3G059820.1	Chy3G059820.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0030154	cell differentiation
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0003676	nucleic acid binding