Chy3G059510 (gene) Cucumber (hystrix) v1

Overview


Name	Chy3G059510
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	Unknown protein
Location	chrH03: 13228057 .. 13228489 (+)
RNA-Seq Expression	Chy3G059510
Synteny	Chy3G059510

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCACGGCATAAGTGAATGGAAGTGGTGTCTTAGTGGAAAAATAGGAAAAGATACGATCTGAGGGAGAGTTTGAAGATGAAGAAAGATAGAATTATACAAAGGAGGAAAAAAATAAAAAGTCATAGGTTTATCTGGTGTTGGCAGCTTTTCTGTCATTCTTTATGGCCATTTCATCTTTTTCCTTTGAGCAAGGGAGCTTGGAGAATTGCGATATACATTAGTGAGGCAGAATATTTCAGCGTGTGTGGTAGTGGCAATGAGGCTCTCCAGGTTAAATGAATTTGGAGGCTTTCCAAGGGAAGATTGAGCTTTACTGTTAATTGGTGGGAGGCAAATATGAAAATGGTCTCTTCAAAGAGGAGGGAAAAAGTGATGAGAAATGAAGTTTTTCCAGTTTATGGCGGTCAATTTCCAATGTCAGACAATTAG

mRNA sequence

ATGGCCACGGCATAAGTGAATGGAAGTGGTGTCTTACTTTTCTGTCATTCTTTATGGCCATTTCATCTTTTTCCTTTGAGCAAGGGAGCTTGGAGAATTGCGATATACATTAGTGAGGCAGAATATTTCAGCGTGTGTGGTAGTGGCAATGAGGCTCTCCAGGTTAAATGAATTTGGAGGCTTTCCAAGGGAAGATTGAGCTTTACTGTTAATTGGTGGGAGGCAAATATGAAAATGGTCTCTTCAAAGAGGAGGGAAAAAGTGATGAGAAATGAAGTTTTTCCAGTTTATGGCGGTCAATTTCCAATGTCAGACAATTAG

Coding sequence (CDS)

ATGGCCACGGCATAAGTGAATGGAAGTGGTGTCTTACTTTTCTGTCATTCTTTATGGCCATTTCATCTTTTTCCTTTGAGCAAGGGAGCTTGGAGAATTGCGATATACATTAGTGAGGCAGAATATTTCAGCGTGTGTGGTAGTGGCAATGAGGCTCTCCAGGTTAAATGAATTTGGAGGCTTTCCAAGGGAAGATTGAGCTTTACTGTTAATTGGTGGGAGGCAAATATGAAAATGGTCTCTTCAAAGAGGAGGGAAAAAGTGATGAGAAATGAAGTTTTTCCAGTTTATGGCGGTCAATTTCCAATGTCAGACAATTAG

Protein sequence

MATA*VNGSGVLLFCHSLWPFHLFPLSKGAWRIAIYISEAEYFSVCGSGNEALQVK*IWRLSKGRLSFTVNWWEANMKMVSSKRREKVMRNEVFPVYGGQFPMSDN*

Homology

[Close]

BLAST of Chy3G059510 vs. ExPASy TrEMBL
Match: A0A0A0KHE5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G404220 PE=4 SV=1)

HSP 1 Score: 194.9 bits (494), Expect = 1.7e-46
Identity = 90/106 (84.91%), Postives = 94/106 (88.68%), Query Frame = 0


Query: 1   MATA*VNGSGVLLFCHSLWPFHLFPLSKGAWRIAIYISEAEYFSVCGSGNEALQVK*IWR 60
           MATA VNGSGVL FCH+LWPF L P SKGAWRIAIYISE EYFSVCGSGN ALQVK IWR
Sbjct: 1   MATAQVNGSGVLPFCHTLWPFRLLPSSKGAWRIAIYISETEYFSVCGSGNVALQVKRIWR 60

Query: 61  LSKGRLSFTVNWWEANMKMVSSKRREKVMRNEVFPVYGGQFPMSDN 107
           L KGRLSFTVNWWEA+MK+ S +RRE VMRNEVFPVYGGQFPMSDN
Sbjct: 61  LCKGRLSFTVNWWEADMKVASPERRENVMRNEVFPVYGGQFPMSDN 106

[Close]

BLAST of Chy3G059510 vs. NCBI nr
Match: KGN47807.1 (hypothetical protein Csa_003156 [Cucumis sativus])

HSP 1 Score: 193 bits (490), Expect = 1.29e-61
Identity = 90/106 (84.91%), Postives = 94/106 (88.68%), Query Frame = 0


Query: 1   MATA*VNGSGVLLFCHSLWPFHLFPLSKGAWRIAIYISEAEYFSVCGSGNEALQVK*IWR 60
           MATA VNGSGVL FCH+LWPF L P SKGAWRIAIYISE EYFSVCGSGN ALQVK IWR
Sbjct: 1   MATAQVNGSGVLPFCHTLWPFRLLPSSKGAWRIAIYISETEYFSVCGSGNVALQVKRIWR 60

Query: 61  LSKGRLSFTVNWWEANMKMVSSKRREKVMRNEVFPVYGGQFPMSDN 106
           L KGRLSFTVNWWEA+MK+ S +RRE VMRNEVFPVYGGQFPMSDN
Sbjct: 61  LCKGRLSFTVNWWEADMKVASPERRENVMRNEVFPVYGGQFPMSDN 106

The following BLAST results are available for this feature:

BLAST of Chy3G059510 vs.


Match Name	E-value	Identity	Description

BLAST of Chy3G059510 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KHE5	1.7e-46	84.91	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G404220 PE=4 SV=1	[more]

BLAST of Chy3G059510 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN47807.1	1.29e-61	84.91	hypothetical protein Csa_003156 [Cucumis sativus]	[more]

BLAST of Chy3G059510 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy3G059510.1	Chy3G059510.1	mRNA