Chy3G059160 (gene) Cucumber (hystrix) v1

Overview
NameChy3G059160
Typegene
OrganismCucumis hystrix (Cucumber (hystrix) v1)
DescriptionDVL-like protein
LocationchrH03: 12872619 .. 12877852 (-)
RNA-Seq ExpressionChy3G059160
SyntenyChy3G059160
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACGGAAGAAAGAAGAAGGCTATGCAAGAGAACACCGTCGTCGGCTTGTAGTAGGAGATCGGGAACGGCGTCGTTTAAGCAGAGGTGTAGTTTGCTTGTGAAGGAACAAAGAGCTAGGTTTTACATTCTTCGCCGATGTGTCGTCATGCTCGTCTGTTGGAATTACTATGCTGACCCTTGAATTTTTTTCTTTTTTCTTTTTTGTATATAGTTTTATTAGCCAATACCCATTATTAACTTTGGAGGGTTTTTTTTTTCTTTTGTTTTTTCTTTTTTTCTTTTTTTCTTTTTTCTTTTTATATTGGCCTAGCTACCTGTGATTTGGAAAGAACAATTAGATATATTTTTATAGTATATTCCTTTGAAAATTTTATACAAGTTTTGGTATATTTCAATATTACATCTCTTTAATTAATTAATATTATTCCCCCTCTCTTTTTCCATAAGTATTCTTTATTTACTTATTACTAGAAATTCTTGTCTATATTTATATTTTTATGTATATATAATATATAATAAGATATGGAGCTAGTAGTCCACCTCTAAAAAATAAAAAATGAATATTATGTGTATGGAGGTAAGTCATTATATCATTAAATTAATAAATGGTTATAATTTTAAATAATTAACTTTTTGAAAAATCTTGACTTCATAATGATAGAAGTGGTATGTTTGAAATTTGAATGAAAGATTTATGAATAAAGAAAAGAAAGATTGAATGAATCATTAAAATTAATTAATAAAGTTAGTGGTGACGTAAGAGTGAAATTGTGAACCGACAAGAAGAATCCTTGGAATAGCTGCACCGTACACCATCCTCTCAGCTCCACCACTATTGGGCCTTCACTAAGCCCATTTCTACTTATGGGGCCACCAGCCCATTCAAGGCCCAAGTACTTCATTATTTTTTCAAAAATATATAATATAAAATCATTGTTGTTTTATTACTTAGTTAAAACATTCTATACCATTTTATTTAAAATATGGTTGAAAACGCATCTTTCACAGCCCATCTATTGTTTCCGCACTTCTTTATGTGGTTCTCATCATTTTTTGTAGTTATTCTCTCGTACAGTAACTTTGTGTCTATTAGGTTTAGTTCAGATTTTATACGCATCTATTATAAAATCAGATATTCGAATGTTGATATATAACCATCAATCATGATACTTTTAAATATTTAAAAGTAAATGAGAGAAGAAGGGAAGAGATATGGAAGTGAAAGAAAGGGAATATATAGATATATATAAATATATGTATATGTATGAATATATATAAGAGGACCCATTGGTTTCCAAATGAACACAAGGAGTGATGTTCCCTAAAAAGTGGGATGGTCTAATCAACAACTCCAAATACAGCTCTTTGGTTTTTTCATATTTCAATCAATGTGTTTTGAAATTGCATGGTCATGGAAATTAAGCCAATGCATTTCTCTTTCATTCAACATTTTTTTTGTCTCTCTTTGCCTTTTCAAACCATTTCTTCAAATAGTTTCACTTTTGTATCTATTTGCCCTTTGCCCTAACCTTTTTTCTTGCTTTTTAATTAATTTCTTCAATCAAAATATTATAATGTGAAAGAGAGAGAGAGAAAAAAAAAAAAAAAGACACACTTCCTTCTTCTTAGCTTCTTTGCCAACACACTTTTTGGATTCTCACCTTACTAACTCAAATCAACAAAATAAATATTATTTTTCTTTCTCTTTTAAAAAAGATATGAAAATTGTCGGTTTTAAGTATGATTCCTTCTTTTTTTTCTTTTGTTAGTTTGGTAGGTATAGTACTTTTGGTCATATTAAAAAACTATGTTGTTTTTGTTAGTTTAGGTAAAGATTAGCTTTGTTAATATGGTTTTAAAAGTTTCAATTTGGAGTTTACGTTTCTAATTTGTTTCAATGTGATTTCTATTTATAATTTTAAAAGCTTTGGTTTGACTCTTCATTAAGAATAGAGGACATCCAACTAGGGTTAACATCTTTTTACCTGTCATTGTGACTATCTCCTTCAAAGAAAGAAACATTGTGATGCAAAAAAATTTCAGCAACATGTGTACGTAAGAGTGATCTTTCTACAAAAACGATTATATTAACCAAAAGAGAGATCTAGCCACAACTCTTGAAACTCGCAATAGGGGCATTCTTAATGTTCTTTGTTTTAGAAAGATTGAACTTGGGATCATTCATTTTTCCTCTATGAATGACCTTGATTTTCATAACACTTTCCACAACTCCATTTCCCACCGATCTAGACAAGACCTCCTTTTGAGAGGAAGCAAGATGATTATTGTCAAAGAGATAAACACTTTCACCATAGAGAAATTTTAAAACATATTATAACTAGAGAAACATTGTTAAAGAGATAGTTGGGAAGGTGCATTTGTAATTTATTCTCGTAGTTTGGCAATATGTCATGTGAAATACACATTAAAATAACTTGATTTTTTTATAAAAGAAAAATAAACATTTTAATTAAAAACTTTACAATCAATTTGAGCATAGTTAACTGCGTATCTCGAATATTAGTGAAACTCAATTTCTCACTTCACTCAATTGTTAAACTCAATCGAAACGTATGCATATATATATTCCATGTCTTTAAATTTTCAACCAAATTATGCAACTCTTAACTTAAGTACCCAACAAAAATTAGAAACCAAAGGATTTGGAAATAAGAATGAAAAAAAATAAAAAAGAAAGTTCAAAGCATGTAGATCTCACAATATTCAATGGACCACAAAGTATATAAATCATCAATCTCAATCTAAAAAAAGATCTGCAACAGTTGGAACATTTTGGAAAAGCCTTTCTGTCACACTTTGAAACTAAGATACAATAATCTTAATAATAATGAATGAAAAAAGAAAAGAAGATAGGGCTATCCAAATTAAGTGTGATATGATAATCAATTTGTTTCAATGATTAAGTCCCAAAGAAGTGGATTTAATTCAAAGGTTCCCACCACCAAAACATACACACACAGTTTGAAGATTGGGTTTTGAAAAGATTTGTTGAGGATTGCAATCAAACAAGATAGAAACTAAAAAAGTAAGTTTGTCCAAAATCAAATTGCCCTTAGAACTTATGATGGAGAAAAGTTTGTTGCCTTAACAATGACCCATTTTCTCCTTATCCTTCAGGTGCTCTTGTCCCCCTAAAGGAACTTTGGATTGTCCCTTCCAACATATATTTTCTAAATATATATACTAACGTGCTATTCTATCTTTCTTTCTCGTTGCTAAACCCAAATTTTGGATATCTCATATGTGGAATAACGTAATGGAAGTTCTCGTTAGAAGAAATGGTAGTTCCTACGTGTTCTTAATGAACAAATTAATTAGATAGAAAAAACTATATAAGCAAACCCATACAAGAGTTGTTCTTTCTCTTGTTCAAATTACTTTTTTGAGTTTTCTTTAAATTACAACATGAAAAGTGTATATAATGTTTTACATTATTGGATAGTAAAAATAGCTTATCATTGATGATGATCATCATCTTACACGTGATTTTAACTTTTTAGTGGTGTGTAGTTTTTATGATATCGTATAAGTATGATCGTATTATTGCAAGGATGAGTTTAAGATTATTTCTATAACCCTATATGTGTATGTAACTAGCTTTATCTTATTTTTGCCTATGAATTATAACTTTTGCCATGGATGCCCTTTTTTTGTTTTTTTAAATCCTCATGATTGTGTAGTTTTTTTTCTACTTGACTAGGCTATCTCAATTTGAGATATTGTAACAAAGAAAAACAAAAAATGTGATGATGGAATGAGAGAAATAAAAGGAAGGAAAATCATTATCCAATAGAGCTCATGAATGTAAGTAAATGATAGTGTGTAGGACAAATAACTTTGTGACTCTTGACTAGAGGACATGTGATGAGTTGACAAAACATTGGTACTTCCTAGATGAAGAGAGTTAAATGGAAGTAGCAGCCTAGCAGGTTCATTTTCACGTGTCAAATACGTGATAAACAAGAAGCTAAAGGTCGTAATCATGTCAAACAAAAAAAGAATTCCTTGTCTTTGATCTAAAGCATGGAAGAACGCCACATTTTCTTTTAAAATGCAACATCCATTTCTTTAAGTCAAGTTTTATCGTGATAATATAAGATAAGCTTATCTACACACGAAAGTAGACTTATCTACAAATAAGAATAGATGTTTTGAAAGATAAATGACTCATTAATGTATAGTTCTTTCATTAAAACATTAAAAATCAAAGCAAAAAATGCCAAATTTTATGTGATTTTTTCCAAAACCTTCAAATATAAATAAATATATATATATATATGTTTTTTTTTAAAAAAAAAAAAAAAAAAGCTCTTTTTCTAAATTCAAAAAAAACAAAACAAAACAAACAATTTAGTTCAATCAGACTTGTTGATTTGAAGGTTTGGAAGTTTGATCGTGGTTTGAAAATGCAGTAGTGACAAGGTTGTCATTGCCCTGTACTTGGGCCTTCAAGTACAAAGATTGAGGGCCCAACTTATTAACTAATGAAAGAGAATTGTGTGGAGCCCAGCCCAATCTAGTCGGTAAACATAACATTTTTCCTTCAACAAAATATATATATGGACACGTAGGTATTATAAATGAGTGTTTTTTTTTTACCCACTTTAGTGGAAAAGACAAAAAAAAAACGTATCACTTTTAAGTCCTTAAAAGGATAAAGGTTTGATCTCTCGTTTTGAAGGGAAAAAATATCATAGTAATTAAAATGATATAACATCTCTTTTCAATTCACAAGTGTAAAAATCTATTTATTTTACCTCTTTTGAAAACTATTTTGTTTTATAAATTGAGATTATAAAAACTACTTTCATGTGTAAGTTTATGTTTGTTTTCTATGTATTATTACTACTATTTTAACAAATCAAGTCGAGTTGTGAAAAAAAAAAAAAAAAAAAAAACTTAGTTATTAGTGCAATTCATTATGGAAAGAAAACAGGCCAATTTTTATATTTTTAATGTTTTAGGAGAAATGTATTTAAAAAAAATTCACTTATATAGAAGCCCGGCCCAATTGGCCCAATTAGCCCAATTTTGTATTGGGCCTCAAATCAACTGGGGTTTCATCTTCTTTTCTTCGACATATCGGATTCGGATAGGCTTTCCGAATCCGATACGTCGTTTTTACGCGAGACAATGTCGTTCGTTCTTCTTCGCGATTCAATTGAGAAAGTTGAGTTGTCAAATATTGGGAAAACTTTTAACAGCCATTAA

mRNA sequence

ATGACGGAAGAAAGAAGAAGGCTATGCAAGAGAACACCGTCGTCGGCTTGTAGTAGGAGATCGGGAACGGCGTCGTTTAAGCAGAGGTGTAGTTTGCTTGTGAAGGAACAAAGAGCTAGGTTTTACATTCTTCGCCGATGTGTCGTCATGCTCAAGCCCGGCCCAATTGGCCCAATTAGCCCAATTTTGTATTGGGCCTCAAATCAACTGGGGTTTCATCTTCTTTTCTTCGACATATCGGATTCGGATAGGCTTTCCGAATCCGATACGTCGTTTTTACGCGAGACAATGTCGTTCGTTCTTCTTCGCGATTCAATTGAGAAAGTTGAGTTGTCAAATATTGGGAAAACTTTTAACAGCCATTAA

Coding sequence (CDS)

ATGACGGAAGAAAGAAGAAGGCTATGCAAGAGAACACCGTCGTCGGCTTGTAGTAGGAGATCGGGAACGGCGTCGTTTAAGCAGAGGTGTAGTTTGCTTGTGAAGGAACAAAGAGCTAGGTTTTACATTCTTCGCCGATGTGTCGTCATGCTCAAGCCCGGCCCAATTGGCCCAATTAGCCCAATTTTGTATTGGGCCTCAAATCAACTGGGGTTTCATCTTCTTTTCTTCGACATATCGGATTCGGATAGGCTTTCCGAATCCGATACGTCGTTTTTACGCGAGACAATGTCGTTCGTTCTTCTTCGCGATTCAATTGAGAAAGTTGAGTTGTCAAATATTGGGAAAACTTTTAACAGCCATTAA

Protein sequence

MTEERRRLCKRTPSSACSRRSGTASFKQRCSLLVKEQRARFYILRRCVVMLKPGPIGPISPILYWASNQLGFHLLFFDISDSDRLSESDTSFLRETMSFVLLRDSIEKVELSNIGKTFNSH*
Homology
BLAST of Chy3G059160 vs. ExPASy Swiss-Prot
Match: Q8S8S3 (Small polypeptide DEVIL 11 OS=Arabidopsis thaliana OX=3702 GN=DVL11 PE=3 SV=1)

HSP 1 Score: 47.8 bits (112), Expect = 1.1e-04
Identity = 23/45 (51.11%), Postives = 32/45 (71.11%), Query Frame = 0

Query: 7  RLCKRTPSSACSRRSGTASFKQRCSLLVKEQRARFYILRRCVVML 52
          R    + SS   ++ G  +F ++C+ LVKEQRARFYI+RRCV+ML
Sbjct: 33 RSSSTSSSSFNGKKQGRCAFTRKCARLVKEQRARFYIMRRCVIML 77

BLAST of Chy3G059160 vs. ExPASy Swiss-Prot
Match: Q6IM93 (Small polypeptide DEVIL 8 OS=Arabidopsis thaliana OX=3702 GN=DVL8 PE=3 SV=1)

HSP 1 Score: 46.2 bits (108), Expect = 3.1e-04
Identity = 21/33 (63.64%), Postives = 26/33 (78.79%), Query Frame = 0

Query: 19 RRSGTASFKQRCSLLVKEQRARFYILRRCVVML 52
          ++ G   F ++C  LVKEQRARFYI+RRCVVML
Sbjct: 33 QKQGKYGFTRKCGRLVKEQRARFYIMRRCVVML 65

BLAST of Chy3G059160 vs. ExPASy TrEMBL
Match: A0A5A7SZH0 (DVL-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold360G00410 PE=4 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 2.8e-16
Identity = 49/51 (96.08%), Postives = 49/51 (96.08%), Query Frame = 0

Query: 1  MTEERRRLCKRTPSSACSRRSGTASFKQRCSLLVKEQRARFYILRRCVVML 52
          MTEE RRLCKRT SSACSRRSGTASFKQRCSLLVKEQRARFYILRRCVVML
Sbjct: 1  MTEEGRRLCKRTSSSACSRRSGTASFKQRCSLLVKEQRARFYILRRCVVML 51

BLAST of Chy3G059160 vs. NCBI nr
Match: KAE8647306.1 (hypothetical protein Csa_004317 [Cucumis sativus])

HSP 1 Score: 102 bits (254), Expect = 5.61e-26
Identity = 51/51 (100.00%), Postives = 51/51 (100.00%), Query Frame = 0

Query: 1  MTEERRRLCKRTPSSACSRRSGTASFKQRCSLLVKEQRARFYILRRCVVML 51
          MTEERRRLCKRTPSSACSRRSGTASFKQRCSLLVKEQRARFYILRRCVVML
Sbjct: 1  MTEERRRLCKRTPSSACSRRSGTASFKQRCSLLVKEQRARFYILRRCVVML 51

BLAST of Chy3G059160 vs. NCBI nr
Match: KAA0036490.1 (DVL-like protein [Cucumis melo var. makuwa] >TYJ99996.1 DVL-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 96.7 bits (239), Expect = 1.07e-23
Identity = 49/51 (96.08%), Postives = 49/51 (96.08%), Query Frame = 0

Query: 1  MTEERRRLCKRTPSSACSRRSGTASFKQRCSLLVKEQRARFYILRRCVVML 51
          MTEE RRLCKRT SSACSRRSGTASFKQRCSLLVKEQRARFYILRRCVVML
Sbjct: 1  MTEEGRRLCKRTSSSACSRRSGTASFKQRCSLLVKEQRARFYILRRCVVML 51

BLAST of Chy3G059160 vs. NCBI nr
Match: KAG7016303.1 (hypothetical protein SDJN02_21410, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 85.9 bits (211), Expect = 2.07e-19
Identity = 46/54 (85.19%), Postives = 47/54 (87.04%), Query Frame = 0

Query: 1  MTEERRRLCK---RTPSSACSRRSGTASFKQRCSLLVKEQRARFYILRRCVVML 51
          M EERRRLC+   R  SSACSRRS TASFKQRCSLLVKEQRARFYILRRCVVML
Sbjct: 1  MMEERRRLCRGEVRDSSSACSRRSATASFKQRCSLLVKEQRARFYILRRCVVML 54

BLAST of Chy3G059160 vs. NCBI nr
Match: KAE8647307.1 (hypothetical protein Csa_023537, partial [Cucumis sativus])

HSP 1 Score: 71.2 bits (173), Expect = 9.50e-14
Identity = 38/54 (70.37%), Postives = 43/54 (79.63%), Query Frame = 0

Query: 70  LGFHLLFFDISDSDRLS--ESDTSFLRETMSFVLLRDSIEKVELSNIGKTFNSH 121
           + +  +FF  +   R+   ESDTSFLRETMSFVLLRDSIEKVELSNIGKTFNSH
Sbjct: 1   INWGFIFFSSTYRIRIGFPESDTSFLRETMSFVLLRDSIEKVELSNIGKTFNSH 54

BLAST of Chy3G059160 vs. NCBI nr
Match: DAD26787.1 (TPA_asm: hypothetical protein HUJ06_028255 [Nelumbo nucifera])

HSP 1 Score: 54.3 bits (129), Expect = 4.11e-07
Identity = 29/40 (72.50%), Postives = 31/40 (77.50%), Query Frame = 0

Query: 14 SSACSR--RSGTASFKQRCSLLVKEQRARFYILRRCVVML 51
          +S CSR  R    SF QRCS LVKEQRARFYILRRCV+ML
Sbjct: 6  TSFCSRHLRDPCRSFGQRCSRLVKEQRARFYILRRCVIML 45

BLAST of Chy3G059160 vs. TAIR 10
Match: AT2G39705.1 (ROTUNDIFOLIA like 8 )

HSP 1 Score: 47.8 bits (112), Expect = 7.5e-06
Identity = 23/45 (51.11%), Postives = 32/45 (71.11%), Query Frame = 0

Query: 7  RLCKRTPSSACSRRSGTASFKQRCSLLVKEQRARFYILRRCVVML 52
          R    + SS   ++ G  +F ++C+ LVKEQRARFYI+RRCV+ML
Sbjct: 33 RSSSTSSSSFNGKKQGRCAFTRKCARLVKEQRARFYIMRRCVIML 77

BLAST of Chy3G059160 vs. TAIR 10
Match: AT3G55515.1 (ROTUNDIFOLIA like 7 )

HSP 1 Score: 46.2 bits (108), Expect = 2.2e-05
Identity = 21/33 (63.64%), Postives = 26/33 (78.79%), Query Frame = 0

Query: 19 RRSGTASFKQRCSLLVKEQRARFYILRRCVVML 52
          ++ G   F ++C  LVKEQRARFYI+RRCVVML
Sbjct: 33 QKQGKYGFTRKCGRLVKEQRARFYIMRRCVVML 65

BLAST of Chy3G059160 vs. TAIR 10
Match: AT1G53708.1 (ROTUNDIFOLIA like 9 )

HSP 1 Score: 42.7 bits (99), Expect = 2.4e-04
Identity = 23/42 (54.76%), Postives = 27/42 (64.29%), Query Frame = 0

Query: 25 SFKQRCSLLVKEQRARFYILRRCVVMLKPGPI-GPISPILYW 66
          +F  +C+ LVKEQRAR YILRRC  ML    I G  SP+  W
Sbjct: 13 AFTSKCASLVKEQRARLYILRRCATMLCCWYIQGDDSPLAAW 54

BLAST of Chy3G059160 vs. TAIR 10
Match: AT2G36985.1 (DVL family protein )

HSP 1 Score: 42.4 bits (98), Expect = 3.1e-04
Identity = 18/27 (66.67%), Postives = 24/27 (88.89%), Query Frame = 0

Query: 25 SFKQRCSLLVKEQRARFYILRRCVVML 52
          +F Q+CS +VK+QRA+FYILRRC+ ML
Sbjct: 14 TFGQKCSHVVKKQRAKFYILRRCIAML 40

BLAST of Chy3G059160 vs. TAIR 10
Match: AT2G29125.1 (ROTUNDIFOLIA like 2 )

HSP 1 Score: 40.8 bits (94), Expect = 9.1e-04
Identity = 20/34 (58.82%), Postives = 25/34 (73.53%), Query Frame = 0

Query: 18  SRRSGTASFKQRCSLLVKEQRARFYILRRCVVML 52
           S  S ++S  Q+ S L KEQ+ARFYI+RRCV ML
Sbjct: 73  SSSSSSSSITQKYSSLAKEQKARFYIMRRCVAML 106

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Q8S8S31.1e-0451.11Small polypeptide DEVIL 11 OS=Arabidopsis thaliana OX=3702 GN=DVL11 PE=3 SV=1[more]
Q6IM933.1e-0463.64Small polypeptide DEVIL 8 OS=Arabidopsis thaliana OX=3702 GN=DVL8 PE=3 SV=1[more]
Match NameE-valueIdentityDescription
A0A5A7SZH02.8e-1696.08DVL-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold360G004... [more]
Match NameE-valueIdentityDescription
KAE8647306.15.61e-26100.00hypothetical protein Csa_004317 [Cucumis sativus][more]
KAA0036490.11.07e-2396.08DVL-like protein [Cucumis melo var. makuwa] >TYJ99996.1 DVL-like protein [Cucumi... [more]
KAG7016303.12.07e-1985.19hypothetical protein SDJN02_21410, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAE8647307.19.50e-1470.37hypothetical protein Csa_023537, partial [Cucumis sativus][more]
DAD26787.14.11e-0772.50TPA_asm: hypothetical protein HUJ06_028255 [Nelumbo nucifera][more]
Match NameE-valueIdentityDescription
AT2G39705.17.5e-0651.11ROTUNDIFOLIA like 8 [more]
AT3G55515.12.2e-0563.64ROTUNDIFOLIA like 7 [more]
AT1G53708.12.4e-0454.76ROTUNDIFOLIA like 9 [more]
AT2G36985.13.1e-0466.67DVL family protein [more]
AT2G29125.19.1e-0458.82ROTUNDIFOLIA like 2 [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR012552DVLPFAMPF08137DVLcoord: 35..51
e-value: 1.0E-10
score: 41.2

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Chy3G059160.1Chy3G059160.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008285 negative regulation of cell population proliferation
biological_process GO:0048367 shoot system development
cellular_component GO:0005886 plasma membrane