Chy3G059010 (gene) Cucumber (hystrix) v1

Overview


Name	Chy3G059010
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	U11/U12 small nuclear ribonucleoprotein 31 kDa protein
Location	chrH03: 12706459 .. 12707244 (-)
RNA-Seq Expression	Chy3G059010
Synteny	Chy3G059010

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGCCCATGGGAAAGAAAACCAATAGCCCTACTAGCGACAGCGACGAGGACGAAACCTTCTATTACCGGTATCCCTCCGCCCCCTCTTCTGCCCCGTCGCTTCCGTCGTCTTCACAGTCGCTCTTCTCATCGCAATCGCACTCACACTCATACTCTTCCACTAAGTCTGGCGGTGGTTCCGGAGGTTTGGTTCCTTCGAAGTCTACTCTCTATGTTTCCAATTTCGACTATTCACTCACTAATTCCGACCTCCACACTCTCTTCTCCACCTTTGGTAAGATCGCTCGTGTTACGGTGTTGAAAGATCGACAGACTCGCAAGTCTCGCGGCGTTGCCTTTGTCCAGTTTATTTCTCAGGACGACGCGGTGAAGGCCGCGAAACAGATGCACGGGAAGATTTTGAATGGCCGTGTTCTTAAGGCTGCTATAGCGACTGATAATGGTCGCGCCGCTGAGTTTATAAGGAAGAGGGTTTATAAGGATAAGAGTAGGTGCTACGAGTGCGGCGCAGTTGATGGGCATTTGTCTTATGAATGCCCTAAAAATCAATTGGGGCCAAGGGAGCGACCAGAACCGAAGCGGGTAAGAAGGGGTGGAGTTGGTGCTAGGCACGAGGAGGATTGGGGATCGGATGTTGGAGAAGGGTTTGAGGATGACAATTGGGCCTCGGTGGTGGACGGAGATGCAGACCAGAGAATCCTGACTGGCGGTGAGAACATTGTAGAGAAGAAAAAAGAGAAGAAAGCAAGTTATTTCAGTGACGAGAGCGACGAAGATGATTAA

mRNA sequence

ATGGCGCCCATGGGAAAGAAAACCAATAGCCCTACTAGCGACAGCGACGAGGACGAAACCTTCTATTACCGGTATCCCTCCGCCCCCTCTTCTGCCCCGTCGCTTCCGTCGTCTTCACAGTCGCTCTTCTCATCGCAATCGCACTCACACTCATACTCTTCCACTAAGTCTGGCGGTGGTTCCGGAGGTTTGGTTCCTTCGAAGTCTACTCTCTATGTTTCCAATTTCGACTATTCACTCACTAATTCCGACCTCCACACTCTCTTCTCCACCTTTGGTAAGATCGCTCGTGTTACGGTGTTGAAAGATCGACAGACTCGCAAGTCTCGCGGCGTTGCCTTTGTCCAGTTTATTTCTCAGGACGACGCGGTGAAGGCCGCGAAACAGATGCACGGGAAGATTTTGAATGGCCGTGTTCTTAAGGCTGCTATAGCGACTGATAATGGTCGCGCCGCTGAGTTTATAAGGAAGAGGGTTTATAAGGATAAGAGTAGGTGCTACGAGTGCGGCGCAGTTGATGGGCATTTGTCTTATGAATGCCCTAAAAATCAATTGGGGCCAAGGGAGCGACCAGAACCGAAGCGGGTAAGAAGGGGTGGAGTTGGTGCTAGGCACGAGGAGGATTGGGGATCGGATGTTGGAGAAGGGTTTGAGGATGACAATTGGGCCTCGGTGGTGGACGGAGATGCAGACCAGAGAATCCTGACTGGCGGTGAGAACATTGTAGAGAAGAAAAAAGAGAAGAAAGCAAGTTATTTCAGTGACGAGAGCGACGAAGATGATTAA

Coding sequence (CDS)

ATGGCGCCCATGGGAAAGAAAACCAATAGCCCTACTAGCGACAGCGACGAGGACGAAACCTTCTATTACCGGTATCCCTCCGCCCCCTCTTCTGCCCCGTCGCTTCCGTCGTCTTCACAGTCGCTCTTCTCATCGCAATCGCACTCACACTCATACTCTTCCACTAAGTCTGGCGGTGGTTCCGGAGGTTTGGTTCCTTCGAAGTCTACTCTCTATGTTTCCAATTTCGACTATTCACTCACTAATTCCGACCTCCACACTCTCTTCTCCACCTTTGGTAAGATCGCTCGTGTTACGGTGTTGAAAGATCGACAGACTCGCAAGTCTCGCGGCGTTGCCTTTGTCCAGTTTATTTCTCAGGACGACGCGGTGAAGGCCGCGAAACAGATGCACGGGAAGATTTTGAATGGCCGTGTTCTTAAGGCTGCTATAGCGACTGATAATGGTCGCGCCGCTGAGTTTATAAGGAAGAGGGTTTATAAGGATAAGAGTAGGTGCTACGAGTGCGGCGCAGTTGATGGGCATTTGTCTTATGAATGCCCTAAAAATCAATTGGGGCCAAGGGAGCGACCAGAACCGAAGCGGGTAAGAAGGGGTGGAGTTGGTGCTAGGCACGAGGAGGATTGGGGATCGGATGTTGGAGAAGGGTTTGAGGATGACAATTGGGCCTCGGTGGTGGACGGAGATGCAGACCAGAGAATCCTGACTGGCGGTGAGAACATTGTAGAGAAGAAAAAAGAGAAGAAAGCAAGTTATTTCAGTGACGAGAGCGACGAAGATGATTAA

Protein sequence

MAPMGKKTNSPTSDSDEDETFYYRYPSAPSSAPSLPSSSQSLFSSQSHSHSYSSTKSGGGSGGLVPSKSTLYVSNFDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGVAFVQFISQDDAVKAAKQMHGKILNGRVLKAAIATDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYECPKNQLGPRERPEPKRVRRGGVGARHEEDWGSDVGEGFEDDNWASVVDGDADQRILTGGENIVEKKKEKKASYFSDESDEDD*

Homology

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BLAST of Chy3G059010 vs. ExPASy Swiss-Prot
Match: Q9CAE4 (U11/U12 small nuclear ribonucleoprotein 31 kDa protein OS=Arabidopsis thaliana OX=3702 GN=SNRNP31 PE=2 SV=1)

HSP 1 Score: 274.6 bits (701), Expect = 1.1e-72
Identity = 158/269 (58.74%), Postives = 186/269 (69.14%), Query Frame = 0


Query: 6   KKTNSPTSDSDEDETFYYRYPSAPSSAPSLPSSSQSLFSSQSHSHSYSSTKSGGGSGGLV 65
           KK     SD +ED+TFYYRY S  +  PS P            S S  S+  GGGSGGL 
Sbjct: 2   KKRKIHHSDDEEDDTFYYRYSSVAAPPPSNP--------KHQPSSSAKSSAPGGGSGGLA 61

Query: 66  PSKSTLYVSNFDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGVAFVQFISQDDAVK 125
           PSKSTLYVSN D+SLTNSD+HTLFSTFGK+ARVTVLKDR TR+SRGVAFV ++S++DA K
Sbjct: 62  PSKSTLYVSNLDFSLTNSDIHTLFSTFGKVARVTVLKDRHTRQSRGVAFVLYVSREDAAK 121

Query: 126 AAKQMHGKILNGRVLKAAIATDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYECPKNQL 185
           AA+ M  KILNGR L  +IA DNGRA+EFI+KRVYKDKSRCYECG  +GHLSYECPKNQL
Sbjct: 122 AARSMDAKILNGRKLTVSIAADNGRASEFIKKRVYKDKSRCYECGD-EGHLSYECPKNQL 181

Query: 186 GPRERPEPKRV---RRGGVGARHEEDWGSD------VGEGFEDDNWASVVDGDADQRILT 245
           GPRERP P +    R+   G   E  W +         E FE++NWASVVD +A +R+  
Sbjct: 182 GPRERPPPPKKRGRRKEEEGEAEEISWSAAAPSLAVAEEEFEEENWASVVDNEAGERLRK 241

Query: 246 GGENIVE----KKKEKKASYFSDESDEDD 262
                 E    K+KEKK SYFSDESD++D
Sbjct: 242 REAEEEEERRMKRKEKKVSYFSDESDDED 261

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BLAST of Chy3G059010 vs. ExPASy Swiss-Prot
Match: Q499V6 (Zinc finger CCHC-type and RNA-binding motif-containing protein 1 OS=Rattus norvegicus OX=10116 GN=Zcrb1 PE=2 SV=1)

HSP 1 Score: 173.3 bits (438), Expect = 3.6e-42
Identity = 101/217 (46.54%), Postives = 138/217 (63.59%), Query Frame = 0


Query: 61  SGGLVPSKSTLYVSNFDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGVAFVQFISQ 120
           SGGL PSKST+YVSN  +SLTN+DL+ +FS +GK+ +VT++KD+ TRKS+GVAF+ F+ +
Sbjct: 2   SGGLAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDK 61

Query: 121 DDAVKAAKQMHGKILNGRVLKAAIATDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYEC 180
           D A+   + ++ K L GRV+KA+IA DNGRAAEFIR+R Y DKS+CYECG   GHLSY C
Sbjct: 62  DSALNCTRAINNKQLFGRVIKASIAIDNGRAAEFIRRRNYFDKSKCYECGE-SGHLSYAC 121

Query: 181 PKNQLGPRERPEPK-RVRRGGVGARHEEDWGSDVGEGFEDD------------NWASVVD 240
           PKN LG RE P+ K + ++  V    EE    +V E   +D              A + +
Sbjct: 122 PKNMLGEREPPKKKEKKKKKKVPEPEEEIEEVEVSEEEGEDPALDSLSQAIAFQQAKIEE 181

Query: 241 GDADQRILTGGENIVEKKKE---KKASYFSDESDEDD 262
                R  TGG +  +  +    KK++YFSDE +  D
Sbjct: 182 EQNKWRPSTGGPSTSDDSRRPRIKKSAYFSDEEELSD 217

[Close]

BLAST of Chy3G059010 vs. ExPASy Swiss-Prot
Match: Q8TBF4 (Zinc finger CCHC-type and RNA-binding motif-containing protein 1 OS=Homo sapiens OX=9606 GN=ZCRB1 PE=1 SV=2)

HSP 1 Score: 171.8 bits (434), Expect = 1.0e-41
Identity = 101/220 (45.91%), Postives = 136/220 (61.82%), Query Frame = 0


Query: 61  SGGLVPSKSTLYVSNFDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGVAFVQFISQ 120
           SGGL PSKST+YVSN  +SLTN+DL+ +FS +GK+ +VT++KD+ TRKS+GVAF+ F+ +
Sbjct: 2   SGGLAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDK 61

Query: 121 DDAVKAAKQMHGKILNGRVLKAAIATDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYEC 180
           D A    + ++ K L GRV+KA+IA DNGRAAEFIR+R Y DKS+CYECG   GHLSY C
Sbjct: 62  DSAQNCTRAINNKQLFGRVIKASIAIDNGRAAEFIRRRNYFDKSKCYECGE-SGHLSYAC 121

Query: 181 PKNQLGPRERPEPKRVRRGGVGARHEEDWGSDVGEGFEDDNWASVVDGDADQRILTGGEN 240
           PKN LG RE P+ K  ++       EE+   +  E  ED+     +D    Q I      
Sbjct: 122 PKNMLGEREPPKKKEKKKKKKAPEPEEE--IEEVEESEDEGEDPALD-SLSQAIAFQQAK 181

Query: 241 IVEKKKE-------------------KKASYFSDESDEDD 262
           I E++K+                   KK++YFSDE +  D
Sbjct: 182 IEEEQKKWKPSSGVPSTSDDSRRPRIKKSTYFSDEEELSD 217

[Close]

BLAST of Chy3G059010 vs. ExPASy Swiss-Prot
Match: Q9CZ96 (Zinc finger CCHC-type and RNA-binding motif-containing protein 1 OS=Mus musculus OX=10090 GN=Zcrb1 PE=1 SV=1)

HSP 1 Score: 170.6 bits (431), Expect = 2.3e-41
Identity = 99/217 (45.62%), Postives = 138/217 (63.59%), Query Frame = 0


Query: 61  SGGLVPSKSTLYVSNFDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGVAFVQFISQ 120
           SGGL PSKST+YVSN  +SLTN+DL+ +FS +GK+ +VT++KD+ TRKS+GVAF+ F+ +
Sbjct: 2   SGGLAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDK 61

Query: 121 DDAVKAAKQMHGKILNGRVLKAAIATDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYEC 180
           D A+   + ++ K L GRV+KA+IA DNGRAAEFIR+R Y DKS+CYECG   GHLSY C
Sbjct: 62  DSALNCTRAINNKQLFGRVIKASIAIDNGRAAEFIRRRNYFDKSKCYECGE-SGHLSYAC 121

Query: 181 PKNQLGPRERPEPK-RVRRGGVGARHEEDWGSDVGEGFEDD------------NWASVVD 240
           PKN LG RE P+ K + ++  +    EE    +V E   +D              A + +
Sbjct: 122 PKNMLGEREPPKKKEKKKKRKLPEPEEEIEEVEVSEEEGEDPALDSLSQAIAFQQAKIEE 181

Query: 241 GDADQRILTGGENIVEKKKE---KKASYFSDESDEDD 262
             +  R   GG +  +  +    KK++YFSDE +  D
Sbjct: 182 EQSKWRPNPGGPSTSDDSRRPRIKKSAYFSDEEELSD 217

[Close]

BLAST of Chy3G059010 vs. ExPASy Swiss-Prot
Match: Q5SP50 (Zinc finger CCHC-type and RNA-binding motif-containing protein 1 OS=Danio rerio OX=7955 GN=zcrb1 PE=2 SV=1)

HSP 1 Score: 169.1 bits (427), Expect = 6.7e-41
Identity = 101/218 (46.33%), Postives = 132/218 (60.55%), Query Frame = 0


Query: 61  SGGLVPSKSTLYVSNFDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGVAFVQFISQ 120
           SGGL PSKST+YVSN  +SLTNSD+H L S +GK+ +VT++KD+ TR S+GVAFV F+ +
Sbjct: 2   SGGLAPSKSTVYVSNIPFSLTNSDMHKLCSKYGKVVKVTIVKDKHTRMSKGVAFVLFLDR 61

Query: 121 DDAVKAAKQMHGKILNGRVLKAAIATDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYEC 180
           + A   ++ ++ K L GR++KA+IA DNGRAAEFIRKR Y DKS+CYECG  +GHLSY C
Sbjct: 62  ESAYNCSRSLNNKQLFGRMVKASIAIDNGRAAEFIRKRNYTDKSKCYECGE-EGHLSYAC 121

Query: 181 PKNQLGPRERPEPKRVRRGGVGARHEEDWGSDVGEGFEDDNWASVVDGDADQRILTGGE- 240
           PKN LG RE P  K  ++     + EE    D  E  ED    S+    A Q+     E 
Sbjct: 122 PKNLLGEREPPPKKEKKKKKKVQQPEEVEPEDSEEEGEDPALDSLSQAIAFQQARIEEEE 181

Query: 241 ----------------NIVEKKKEKKASYFSDESDEDD 262
                               K + KK++YFSDE +  D
Sbjct: 182 KRRKQAAEDASQASTSEDTHKPRIKKSAYFSDEEELSD 218

[Close]

BLAST of Chy3G059010 vs. ExPASy TrEMBL
Match: A0A5A7SYZ1 (U11/U12 small nuclear ribonucleoprotein 31 kDa protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold360G00210 PE=4 SV=1)

HSP 1 Score: 473.8 bits (1218), Expect = 4.7e-130
Identity = 247/261 (94.64%), Postives = 250/261 (95.79%), Query Frame = 0


Query: 1   MAPMGKKTNSPTSDSDEDETFYYRYPSAPSSAPSLPSSSQSLFSSQSHSHSYSSTKSGGG 60
           MA  GKKTN+PTSDSDEDETFYYRYPSA SSAP LPSSSQS FSSQSHSH  SSTKSGGG
Sbjct: 1   MARKGKKTNNPTSDSDEDETFYYRYPSAASSAPPLPSSSQSHFSSQSHSH--SSTKSGGG 60

Query: 61  SGGLVPSKSTLYVSNFDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGVAFVQFISQ 120
           SGGLVPSKST+YVSNFDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGVAFVQFISQ
Sbjct: 61  SGGLVPSKSTVYVSNFDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGVAFVQFISQ 120

Query: 121 DDAVKAAKQMHGKILNGRVLKAAIATDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYEC 180
           DDAVKAAKQMHGKILNGRVLKAAIATDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYEC
Sbjct: 121 DDAVKAAKQMHGKILNGRVLKAAIATDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYEC 180

Query: 181 PKNQLGPRERPEPKRVRRGGVGARHEEDWGSDVGEGFEDDNWASVVDGDADQRILTGGEN 240
           PKNQLGPRERPEPKR RRGGVGARHEEDWGSDVGE FEDDNWASVVDGDADQR+LTGGEN
Sbjct: 181 PKNQLGPRERPEPKRGRRGGVGARHEEDWGSDVGEAFEDDNWASVVDGDADQRLLTGGEN 240

Query: 241 IVEKKKEKKASYFSDESDEDD 262
           IVEKKK KKASYFSDES EDD
Sbjct: 241 IVEKKKAKKASYFSDESGEDD 259

[Close]

BLAST of Chy3G059010 vs. ExPASy TrEMBL
Match: A0A1S3C324 (U11/U12 small nuclear ribonucleoprotein 31 kDa protein OS=Cucumis melo OX=3656 GN=LOC103496454 PE=4 SV=1)

HSP 1 Score: 473.8 bits (1218), Expect = 4.7e-130
Identity = 247/261 (94.64%), Postives = 250/261 (95.79%), Query Frame = 0


Query: 1   MAPMGKKTNSPTSDSDEDETFYYRYPSAPSSAPSLPSSSQSLFSSQSHSHSYSSTKSGGG 60
           MA  GKKTN+PTSDSDEDETFYYRYPSA SSAP LPSSSQS FSSQSHSH  SSTKSGGG
Sbjct: 1   MARKGKKTNNPTSDSDEDETFYYRYPSAASSAPPLPSSSQSHFSSQSHSH--SSTKSGGG 60

Query: 61  SGGLVPSKSTLYVSNFDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGVAFVQFISQ 120
           SGGLVPSKST+YVSNFDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGVAFVQFISQ
Sbjct: 61  SGGLVPSKSTVYVSNFDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGVAFVQFISQ 120

Query: 121 DDAVKAAKQMHGKILNGRVLKAAIATDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYEC 180
           DDAVKAAKQMHGKILNGRVLKAAIATDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYEC
Sbjct: 121 DDAVKAAKQMHGKILNGRVLKAAIATDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYEC 180

Query: 181 PKNQLGPRERPEPKRVRRGGVGARHEEDWGSDVGEGFEDDNWASVVDGDADQRILTGGEN 240
           PKNQLGPRERPEPKR RRGGVGARHEEDWGSDVGE FEDDNWASVVDGDADQR+LTGGEN
Sbjct: 181 PKNQLGPRERPEPKRGRRGGVGARHEEDWGSDVGEAFEDDNWASVVDGDADQRLLTGGEN 240

Query: 241 IVEKKKEKKASYFSDESDEDD 262
           IVEKKK KKASYFSDES EDD
Sbjct: 241 IVEKKKAKKASYFSDESGEDD 259

[Close]

BLAST of Chy3G059010 vs. ExPASy TrEMBL
Match: A0A6J1JX53 (U11/U12 small nuclear ribonucleoprotein 31 kDa protein OS=Cucurbita maxima OX=3661 GN=LOC111489639 PE=4 SV=1)

HSP 1 Score: 444.1 bits (1141), Expect = 4.0e-121
Identity = 229/261 (87.74%), Postives = 238/261 (91.19%), Query Frame = 0


Query: 1   MAPMGKKTNSPTSDSDEDETFYYRYPSAPSSAPSLPSSSQSLFSSQSHSHSYSSTKSGGG 60
           M+  GK+  +P SDSD+DETFYYRYPSA SSAP  PSSSQS FSSQSHSH  SSTKSGGG
Sbjct: 1   MSRKGKRAKNPNSDSDDDETFYYRYPSATSSAPPPPSSSQSHFSSQSHSH--SSTKSGGG 60

Query: 61  SGGLVPSKSTLYVSNFDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGVAFVQFISQ 120
           SGGLVPSKST+YVSNFDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRG AFVQFISQ
Sbjct: 61  SGGLVPSKSTVYVSNFDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGAAFVQFISQ 120

Query: 121 DDAVKAAKQMHGKILNGRVLKAAIATDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYEC 180
           DDAVK  KQMHGKILNGR LK AIA DNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYEC
Sbjct: 121 DDAVKTVKQMHGKILNGRALKVAIANDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYEC 180

Query: 181 PKNQLGPRERPEPKRVRRGGVGARHEEDWGSDVGEGFEDDNWASVVDGDADQRILTGGEN 240
           PKNQLGPRERPEPKRVR+GGVGARHEEDWGSD GEGFEDD WASVVDGDADQR+LT  EN
Sbjct: 181 PKNQLGPRERPEPKRVRKGGVGARHEEDWGSDDGEGFEDDKWASVVDGDADQRLLTSSEN 240

Query: 241 IVEKKKEKKASYFSDESDEDD 262
           +VEKKK KKASYFSDES ED+
Sbjct: 241 VVEKKKAKKASYFSDESGEDE 259

[Close]

BLAST of Chy3G059010 vs. ExPASy TrEMBL
Match: A0A6J1FIA0 (U11/U12 small nuclear ribonucleoprotein 31 kDa protein OS=Cucurbita moschata OX=3662 GN=LOC111445663 PE=4 SV=1)

HSP 1 Score: 443.4 bits (1139), Expect = 6.8e-121
Identity = 229/261 (87.74%), Postives = 238/261 (91.19%), Query Frame = 0


Query: 1   MAPMGKKTNSPTSDSDEDETFYYRYPSAPSSAPSLPSSSQSLFSSQSHSHSYSSTKSGGG 60
           M+   K+  +P SDSD+DETFYYRYPSA SSAP  PSSSQS FSSQSHSH  SSTKSGGG
Sbjct: 1   MSRKEKRAKNPNSDSDDDETFYYRYPSATSSAPPPPSSSQSHFSSQSHSH--SSTKSGGG 60

Query: 61  SGGLVPSKSTLYVSNFDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGVAFVQFISQ 120
           SGGLVPSKST+YVSNFDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRG AFVQFISQ
Sbjct: 61  SGGLVPSKSTVYVSNFDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGAAFVQFISQ 120

Query: 121 DDAVKAAKQMHGKILNGRVLKAAIATDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYEC 180
           DDAVK  KQMHGKILNGR LK AIA DNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYEC
Sbjct: 121 DDAVKTVKQMHGKILNGRALKVAIANDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYEC 180

Query: 181 PKNQLGPRERPEPKRVRRGGVGARHEEDWGSDVGEGFEDDNWASVVDGDADQRILTGGEN 240
           PKNQLGPRERPEPKRVR+GGVGARHEEDWGSD GEGFEDDNWASVVDGDADQR+LT  EN
Sbjct: 181 PKNQLGPRERPEPKRVRKGGVGARHEEDWGSDDGEGFEDDNWASVVDGDADQRLLTSSEN 240

Query: 241 IVEKKKEKKASYFSDESDEDD 262
           +VEKKK KKASYFSDES ED+
Sbjct: 241 VVEKKKAKKASYFSDESGEDE 259

[Close]

BLAST of Chy3G059010 vs. ExPASy TrEMBL
Match: A0A6J1BY38 (U11/U12 small nuclear ribonucleoprotein 31 kDa protein OS=Momordica charantia OX=3673 GN=LOC111006640 PE=4 SV=1)

HSP 1 Score: 433.7 bits (1114), Expect = 5.4e-118
Identity = 227/261 (86.97%), Postives = 241/261 (92.34%), Query Frame = 0


Query: 1   MAPMGKKTNSPTSDSDEDETFYYRYPSAPSSAPSLPSSSQSLFSSQSHSHSYSSTKSGGG 60
           MA  GK+TN P SDSD+DETFYYRYPSA SSAP  PSSSQS     S +HS+SS KSGGG
Sbjct: 1   MARKGKRTN-PNSDSDDDETFYYRYPSAASSAPP-PSSSQS-----SQAHSHSSIKSGGG 60

Query: 61  SGGLVPSKSTLYVSNFDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGVAFVQFISQ 120
           SGGLVPSKST+YVSN DYSLTNSDLHTLFSTFGKIARVTVLKDRQTR+SRGVAF+QFISQ
Sbjct: 61  SGGLVPSKSTVYVSNVDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRRSRGVAFIQFISQ 120

Query: 121 DDAVKAAKQMHGKILNGRVLKAAIATDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYEC 180
           DDAVKA K+M+GKILNGRVLKAAIATDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYEC
Sbjct: 121 DDAVKACKEMNGKILNGRVLKAAIATDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYEC 180

Query: 181 PKNQLGPRERPEPKRVRRGGVGARHEEDWGSDVGEGFEDDNWASVVDGDADQRILTGGEN 240
           P+NQLGPRERPEPKR RRGGVGARHEEDWGSD GEGFEDDNWASVVDGDADQR+LTGGEN
Sbjct: 181 PRNQLGPRERPEPKRGRRGGVGARHEEDWGSDGGEGFEDDNWASVVDGDADQRLLTGGEN 240

Query: 241 IVEKKKEKKASYFSDESDEDD 262
           + E+KK KKASYFSDESDED+
Sbjct: 241 VAERKKGKKASYFSDESDEDE 254

[Close]

BLAST of Chy3G059010 vs. NCBI nr
Match: XP_031739837.1 (U11/U12 small nuclear ribonucleoprotein 31 kDa protein-like [Cucumis sativus] >XP_031745445.1 U11/U12 small nuclear ribonucleoprotein 31 kDa protein-like [Cucumis sativus] >XP_031745456.1 U11/U12 small nuclear ribonucleoprotein 31 kDa protein-like [Cucumis sativus] >XP_031745622.1 U11/U12 small nuclear ribonucleoprotein 31 kDa protein-like [Cucumis sativus] >XP_031745721.1 U11/U12 small nuclear ribonucleoprotein 31 kDa protein-like [Cucumis sativus] >KAE8637133.1 hypothetical protein CSA_021509 [Cucumis sativus] >KAE8637376.1 hypothetical protein CSA_004469 [Cucumis sativus] >KAE8637383.1 hypothetical protein CSA_004476 [Cucumis sativus] >KAE8637476.1 hypothetical protein CSA_018827 [Cucumis sativus] >KAE8637589.1 hypothetical protein CSA_021598 [Cucumis sativus])

HSP 1 Score: 501 bits (1289), Expect = 2.36e-178
Identity = 254/261 (97.32%), Postives = 257/261 (98.47%), Query Frame = 0


Query: 1   MAPMGKKTNSPTSDSDEDETFYYRYPSAPSSAPSLPSSSQSLFSSQSHSHSYSSTKSGGG 60
           MAP GKKTNSPTSDSDEDETFYYRYPSAPSS PSLPSSSQS FSSQSHSHS+SSTKSGGG
Sbjct: 1   MAPKGKKTNSPTSDSDEDETFYYRYPSAPSSDPSLPSSSQSHFSSQSHSHSHSSTKSGGG 60

Query: 61  SGGLVPSKSTLYVSNFDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGVAFVQFISQ 120
           SGGLVPSKSTLYVSNFDYSLTNSDLHTLFS FGKIARVTVLKDRQTRKSRGVAFVQFISQ
Sbjct: 61  SGGLVPSKSTLYVSNFDYSLTNSDLHTLFSNFGKIARVTVLKDRQTRKSRGVAFVQFISQ 120

Query: 121 DDAVKAAKQMHGKILNGRVLKAAIATDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYEC 180
           DDAVKAAKQMHGKILNGRVLKAAIATDNGRAAEFIRKRVYKDKSRCYECGA+DGHLSYEC
Sbjct: 121 DDAVKAAKQMHGKILNGRVLKAAIATDNGRAAEFIRKRVYKDKSRCYECGAIDGHLSYEC 180

Query: 181 PKNQLGPRERPEPKRVRRGGVGARHEEDWGSDVGEGFEDDNWASVVDGDADQRILTGGEN 240
           PKNQLGPRERPEPKRVRRGGVGARHEEDWGSDVGEGFEDDNWASVVDGDADQR+LTGGEN
Sbjct: 181 PKNQLGPRERPEPKRVRRGGVGARHEEDWGSDVGEGFEDDNWASVVDGDADQRLLTGGEN 240

Query: 241 IVEKKKEKKASYFSDESDEDD 261
           IVEKKKEKKASYFSDESDEDD
Sbjct: 241 IVEKKKEKKASYFSDESDEDD 261

[Close]

BLAST of Chy3G059010 vs. NCBI nr
Match: XP_031745992.1 (U11/U12 small nuclear ribonucleoprotein 31 kDa protein-like [Cucumis sativus] >KAE8637587.1 hypothetical protein CSA_004586 [Cucumis sativus])

HSP 1 Score: 492 bits (1266), Expect = 9.42e-175
Identity = 253/267 (94.76%), Postives = 256/267 (95.88%), Query Frame = 0


Query: 1   MAPMGKKTNSPTSDSDEDETFYYRYPSAPSSAPSLPSSSQSLFSSQSH------SHSYSS 60
           MAP GKKTNSPTSDSDEDETFYYRYPSAPSS PSLPSSSQS FSSQSH      SHS+SS
Sbjct: 1   MAPKGKKTNSPTSDSDEDETFYYRYPSAPSSDPSLPSSSQSHFSSQSHFSSQSHSHSHSS 60

Query: 61  TKSGGGSGGLVPSKSTLYVSNFDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGVAF 120
           TKSGGGSGGLVPSKSTLYVSNFDYSLTNSDLHTLF  FGKIARVTVLKDRQTRKSRGVAF
Sbjct: 61  TKSGGGSGGLVPSKSTLYVSNFDYSLTNSDLHTLFFNFGKIARVTVLKDRQTRKSRGVAF 120

Query: 121 VQFISQDDAVKAAKQMHGKILNGRVLKAAIATDNGRAAEFIRKRVYKDKSRCYECGAVDG 180
           VQFISQDDAVKAAKQMHGKILNGRVLKAAIATDNGRAAEFIRKRVYKDKSRCYECGA+DG
Sbjct: 121 VQFISQDDAVKAAKQMHGKILNGRVLKAAIATDNGRAAEFIRKRVYKDKSRCYECGAIDG 180

Query: 181 HLSYECPKNQLGPRERPEPKRVRRGGVGARHEEDWGSDVGEGFEDDNWASVVDGDADQRI 240
           HLSYECPKNQLGPRERPEPKRVRRGGVGARHEEDWGSDVGEGFEDDNWASVVDGDADQR+
Sbjct: 181 HLSYECPKNQLGPRERPEPKRVRRGGVGARHEEDWGSDVGEGFEDDNWASVVDGDADQRL 240

Query: 241 LTGGENIVEKKKEKKASYFSDESDEDD 261
           LTGGENIVEKKKEKKASYFSDESDEDD
Sbjct: 241 LTGGENIVEKKKEKKASYFSDESDEDD 267

[Close]

BLAST of Chy3G059010 vs. NCBI nr
Match: XP_031745314.1 (U11/U12 small nuclear ribonucleoprotein 31 kDa protein-like [Cucumis sativus] >KAE8637394.1 hypothetical protein CSA_004754 [Cucumis sativus])

HSP 1 Score: 491 bits (1264), Expect = 1.90e-174
Identity = 253/267 (94.76%), Postives = 256/267 (95.88%), Query Frame = 0


Query: 1   MAPMGKKTNSPTSDSDEDETFYYRYPSAPSSAPSLPSSSQSLFSSQSH------SHSYSS 60
           MAP  KKTNSPTSDSDEDETFYYRYPSAPSS PSLPSSSQS FSSQSH      SHS+SS
Sbjct: 1   MAPKEKKTNSPTSDSDEDETFYYRYPSAPSSDPSLPSSSQSHFSSQSHFSSQSHSHSHSS 60

Query: 61  TKSGGGSGGLVPSKSTLYVSNFDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGVAF 120
           TKSGGGSGGLVPSKSTLYVSNFDYSLTNSDLHTLFS FGKIARVTVLKDRQTRKSRGVAF
Sbjct: 61  TKSGGGSGGLVPSKSTLYVSNFDYSLTNSDLHTLFSNFGKIARVTVLKDRQTRKSRGVAF 120

Query: 121 VQFISQDDAVKAAKQMHGKILNGRVLKAAIATDNGRAAEFIRKRVYKDKSRCYECGAVDG 180
           VQFISQDDAVKAAKQMHGKILNGRVLKAAIATDNGRAAEFIRKRVYKDKSRCYECGA+DG
Sbjct: 121 VQFISQDDAVKAAKQMHGKILNGRVLKAAIATDNGRAAEFIRKRVYKDKSRCYECGAIDG 180

Query: 181 HLSYECPKNQLGPRERPEPKRVRRGGVGARHEEDWGSDVGEGFEDDNWASVVDGDADQRI 240
           HLSYECPKNQLGPRERPEPKRVRRGGVGARHEEDWGSDVGEGFEDDNWASVVDGDADQR+
Sbjct: 181 HLSYECPKNQLGPRERPEPKRVRRGGVGARHEEDWGSDVGEGFEDDNWASVVDGDADQRL 240

Query: 241 LTGGENIVEKKKEKKASYFSDESDEDD 261
           LTGGENIVEKKKEKKASYFSDESDEDD
Sbjct: 241 LTGGENIVEKKKEKKASYFSDESDEDD 267

[Close]

BLAST of Chy3G059010 vs. NCBI nr
Match: XP_008456528.1 (PREDICTED: U11/U12 small nuclear ribonucleoprotein 31 kDa protein [Cucumis melo] >KAA0036504.1 U11/U12 small nuclear ribonucleoprotein 31 kDa protein [Cucumis melo var. makuwa] >TYJ99977.1 U11/U12 small nuclear ribonucleoprotein 31 kDa protein [Cucumis melo var. makuwa])

HSP 1 Score: 478 bits (1229), Expect = 3.07e-169
Identity = 247/261 (94.64%), Postives = 250/261 (95.79%), Query Frame = 0


Query: 1   MAPMGKKTNSPTSDSDEDETFYYRYPSAPSSAPSLPSSSQSLFSSQSHSHSYSSTKSGGG 60
           MA  GKKTN+PTSDSDEDETFYYRYPSA SSAP LPSSSQS FSSQSHSHS  STKSGGG
Sbjct: 1   MARKGKKTNNPTSDSDEDETFYYRYPSAASSAPPLPSSSQSHFSSQSHSHS--STKSGGG 60

Query: 61  SGGLVPSKSTLYVSNFDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGVAFVQFISQ 120
           SGGLVPSKST+YVSNFDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGVAFVQFISQ
Sbjct: 61  SGGLVPSKSTVYVSNFDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGVAFVQFISQ 120

Query: 121 DDAVKAAKQMHGKILNGRVLKAAIATDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYEC 180
           DDAVKAAKQMHGKILNGRVLKAAIATDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYEC
Sbjct: 121 DDAVKAAKQMHGKILNGRVLKAAIATDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYEC 180

Query: 181 PKNQLGPRERPEPKRVRRGGVGARHEEDWGSDVGEGFEDDNWASVVDGDADQRILTGGEN 240
           PKNQLGPRERPEPKR RRGGVGARHEEDWGSDVGE FEDDNWASVVDGDADQR+LTGGEN
Sbjct: 181 PKNQLGPRERPEPKRGRRGGVGARHEEDWGSDVGEAFEDDNWASVVDGDADQRLLTGGEN 240

Query: 241 IVEKKKEKKASYFSDESDEDD 261
           IVEKKK KKASYFSDES EDD
Sbjct: 241 IVEKKKAKKASYFSDESGEDD 259

[Close]

BLAST of Chy3G059010 vs. NCBI nr
Match: XP_038883985.1 (U11/U12 small nuclear ribonucleoprotein 31 kDa protein [Benincasa hispida])

HSP 1 Score: 465 bits (1197), Expect = 2.31e-164
Identity = 239/261 (91.57%), Postives = 248/261 (95.02%), Query Frame = 0


Query: 1   MAPMGKKTNSPTSDSDEDETFYYRYPSAPSSAPSLPSSSQSLFSSQSHSHSYSSTKSGGG 60
           MA  GK+TN+P SDS++DETFYYRYPSA SSAP  PS+SQS FSSQSHSHS  STK  GG
Sbjct: 1   MARKGKRTNNPNSDSEDDETFYYRYPSAASSAPPPPSASQSHFSSQSHSHS--STKFSGG 60

Query: 61  SGGLVPSKSTLYVSNFDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGVAFVQFISQ 120
           SGGLVPSKST+YVSNFDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGVAFVQFISQ
Sbjct: 61  SGGLVPSKSTVYVSNFDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGVAFVQFISQ 120

Query: 121 DDAVKAAKQMHGKILNGRVLKAAIATDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYEC 180
           DDAVKAAKQM+GKILNGRVLKAAIATDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYEC
Sbjct: 121 DDAVKAAKQMNGKILNGRVLKAAIATDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYEC 180

Query: 181 PKNQLGPRERPEPKRVRRGGVGARHEEDWGSDVGEGFEDDNWASVVDGDADQRILTGGEN 240
           PKNQLGPRERPEPKR RRGGVGARHEEDWGSDVGEGFEDDNWASVVDGDADQR+LTGGEN
Sbjct: 181 PKNQLGPRERPEPKRGRRGGVGARHEEDWGSDVGEGFEDDNWASVVDGDADQRLLTGGEN 240

Query: 241 IVEKKKEKKASYFSDESDEDD 261
           +VEKKK KKASYFSDESDEDD
Sbjct: 241 VVEKKKAKKASYFSDESDEDD 259

[Close]

BLAST of Chy3G059010 vs. TAIR 10
Match: AT3G10400.1 (RNA recognition motif and CCHC-type zinc finger domains containing protein )

HSP 1 Score: 274.6 bits (701), Expect = 8.1e-74
Identity = 158/269 (58.74%), Postives = 186/269 (69.14%), Query Frame = 0


Query: 6   KKTNSPTSDSDEDETFYYRYPSAPSSAPSLPSSSQSLFSSQSHSHSYSSTKSGGGSGGLV 65
           KK     SD +ED+TFYYRY S  +  PS P            S S  S+  GGGSGGL 
Sbjct: 2   KKRKIHHSDDEEDDTFYYRYSSVAAPPPSNP--------KHQPSSSAKSSAPGGGSGGLA 61

Query: 66  PSKSTLYVSNFDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGVAFVQFISQDDAVK 125
           PSKSTLYVSN D+SLTNSD+HTLFSTFGK+ARVTVLKDR TR+SRGVAFV ++S++DA K
Sbjct: 62  PSKSTLYVSNLDFSLTNSDIHTLFSTFGKVARVTVLKDRHTRQSRGVAFVLYVSREDAAK 121

Query: 126 AAKQMHGKILNGRVLKAAIATDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYECPKNQL 185
           AA+ M  KILNGR L  +IA DNGRA+EFI+KRVYKDKSRCYECG  +GHLSYECPKNQL
Sbjct: 122 AARSMDAKILNGRKLTVSIAADNGRASEFIKKRVYKDKSRCYECGD-EGHLSYECPKNQL 181

Query: 186 GPRERPEPKRV---RRGGVGARHEEDWGSD------VGEGFEDDNWASVVDGDADQRILT 245
           GPRERP P +    R+   G   E  W +         E FE++NWASVVD +A +R+  
Sbjct: 182 GPRERPPPPKKRGRRKEEEGEAEEISWSAAAPSLAVAEEEFEEENWASVVDNEAGERLRK 241

Query: 246 GGENIVE----KKKEKKASYFSDESDEDD 262
                 E    K+KEKK SYFSDESD++D
Sbjct: 242 REAEEEEERRMKRKEKKVSYFSDESDDED 261

[Close]

BLAST of Chy3G059010 vs. TAIR 10
Match: AT3G23830.1 (glycine-rich RNA-binding protein 4 )

HSP 1 Score: 68.2 bits (165), Expect = 1.1e-11
Identity = 35/90 (38.89%), Postives = 51/90 (56.67%), Query Frame = 0


Query: 62  GGLVPSKSTLYVSNFDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGVAFVQFISQD 121
           G L    S L+V    +   +S L   F++FG++   TV+ DR+T +SRG  FV F  +D
Sbjct: 28  GSLRYMSSKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCED 87

Query: 122 DAVKAAKQMHGKILNGRVLKAAIATDNGRA 152
            A  A K+M GK LNGR ++  +AT+   A
Sbjct: 88  SANNAIKEMDGKELNGRQIRVNLATERSSA 117

[Close]

BLAST of Chy3G059010 vs. TAIR 10
Match: AT3G23830.2 (glycine-rich RNA-binding protein 4 )

HSP 1 Score: 68.2 bits (165), Expect = 1.1e-11
Identity = 35/90 (38.89%), Postives = 51/90 (56.67%), Query Frame = 0


Query: 62  GGLVPSKSTLYVSNFDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGVAFVQFISQD 121
           G L    S L+V    +   +S L   F++FG++   TV+ DR+T +SRG  FV F  +D
Sbjct: 28  GSLRYMSSKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCED 87

Query: 122 DAVKAAKQMHGKILNGRVLKAAIATDNGRA 152
            A  A K+M GK LNGR ++  +AT+   A
Sbjct: 88  SANNAIKEMDGKELNGRQIRVNLATERSSA 117

[Close]

BLAST of Chy3G059010 vs. TAIR 10
Match: AT3G46020.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 62.8 bits (151), Expect = 4.8e-10
Identity = 33/94 (35.11%), Postives = 56/94 (59.57%), Query Frame = 0


Query: 71  LYVSNFDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGVAFVQFISQDDAVKAAKQM 130
           L+VS      T+  L  LFS FG+I    +++D +T++ +G  F+ F S+DDA KA K +
Sbjct: 9   LFVSRLSAYTTDQSLRQLFSPFGQIKEARLIRDSETQRPKGFGFITFDSEDDARKALKSL 68

Query: 131 HGKILNGRVLKAAIATDNGRAAEFIRKRVYKDKS 165
            GKI++GR++   +A    + AE +R  +  +K+
Sbjct: 69  DGKIVDGRLIFVEVA----KNAEEVRAGINSNKA 98

[Close]

BLAST of Chy3G059010 vs. TAIR 10
Match: AT3G08000.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 59.3 bits (142), Expect = 5.3e-09
Identity = 32/95 (33.68%), Postives = 50/95 (52.63%), Query Frame = 0


Query: 69  STLYVSNFDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGVAFVQFISQDDAVKAAK 128
           S L++    +S+    L   FS+FG++A V +  D+ + +SRG  FV F  + DA+ A  
Sbjct: 41  SKLFIGGLSWSVDEQSLKDAFSSFGEVAEVRIAYDKGSGRSRGFGFVDFAEEGDALSAKD 100

Query: 129 QMHGKILNGRVLKAAIATDNGRAAEFIRKRVYKDK 164
            M GK L GR L+ + A +  R    +  R+ K K
Sbjct: 101 AMDGKGLLGRPLRISFALERVRGGPVVVPRLGKSK 135

The following BLAST results are available for this feature:

BLAST of Chy3G059010 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9CAE4	1.1e-72	58.74	U11/U12 small nuclear ribonucleoprotein 31 kDa protein OS=Arabidopsis thaliana O...	[more]
Q499V6	3.6e-42	46.54	Zinc finger CCHC-type and RNA-binding motif-containing protein 1 OS=Rattus norve...	[more]
Q8TBF4	1.0e-41	45.91	Zinc finger CCHC-type and RNA-binding motif-containing protein 1 OS=Homo sapiens...	[more]
Q9CZ96	2.3e-41	45.62	Zinc finger CCHC-type and RNA-binding motif-containing protein 1 OS=Mus musculus...	[more]
Q5SP50	6.7e-41	46.33	Zinc finger CCHC-type and RNA-binding motif-containing protein 1 OS=Danio rerio ...	[more]

BLAST of Chy3G059010 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SYZ1	4.7e-130	94.64	U11/U12 small nuclear ribonucleoprotein 31 kDa protein OS=Cucumis melo var. maku...	[more]
A0A1S3C324	4.7e-130	94.64	U11/U12 small nuclear ribonucleoprotein 31 kDa protein OS=Cucumis melo OX=3656 G...	[more]
A0A6J1JX53	4.0e-121	87.74	U11/U12 small nuclear ribonucleoprotein 31 kDa protein OS=Cucurbita maxima OX=36...	[more]
A0A6J1FIA0	6.8e-121	87.74	U11/U12 small nuclear ribonucleoprotein 31 kDa protein OS=Cucurbita moschata OX=...	[more]
A0A6J1BY38	5.4e-118	86.97	U11/U12 small nuclear ribonucleoprotein 31 kDa protein OS=Momordica charantia OX...	[more]

BLAST of Chy3G059010 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_031739837.1	2.36e-178	97.32	U11/U12 small nuclear ribonucleoprotein 31 kDa protein-like [Cucumis sativus] >X...	[more]
XP_031745992.1	9.42e-175	94.76	U11/U12 small nuclear ribonucleoprotein 31 kDa protein-like [Cucumis sativus] >K...	[more]
XP_031745314.1	1.90e-174	94.76	U11/U12 small nuclear ribonucleoprotein 31 kDa protein-like [Cucumis sativus] >K...	[more]
XP_008456528.1	3.07e-169	94.64	PREDICTED: U11/U12 small nuclear ribonucleoprotein 31 kDa protein [Cucumis melo]...	[more]
XP_038883985.1	2.31e-164	91.57	U11/U12 small nuclear ribonucleoprotein 31 kDa protein [Benincasa hispida]	[more]

BLAST of Chy3G059010 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G10400.1	8.1e-74	58.74	RNA recognition motif and CCHC-type zinc finger domains containing protein	[more]
AT3G23830.1	1.1e-11	38.89	glycine-rich RNA-binding protein 4	[more]
AT3G23830.2	1.1e-11	38.89	glycine-rich RNA-binding protein 4	[more]
AT3G46020.1	4.8e-10	35.11	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT3G08000.1	5.3e-09	33.68	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 70..143 e-value: 7.8E-25 score: 98.5
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 71..141 e-value: 1.5E-21 score: 75.9
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 69..147 score: 18.990221
IPR003954	RNA recognition motif domain, eukaryote	SMART	SM00361	rrm2_1	coord: 70..143 e-value: 4.2E-5 score: 33.0
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 27..144 e-value: 1.2E-27 score: 98.6
None	No IPR available	GENE3D	4.10.60.10		coord: 156..194 e-value: 4.5E-5 score: 25.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 185..211
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..62
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 30..62
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 183..223
None	No IPR available	PANTHER	PTHR46259:SF1	ZINC FINGER CCHC-TYPE AND RNA-BINDING MOTIF-CONTAINING PROTEIN 1	coord: 13..261
IPR044598	Zinc finger CCHC-type and RNA-binding motif-containing protein 1	PANTHER	PTHR46259	ZINC FINGER CCHC-TYPE AND RNA-BINDING MOTIF-CONTAINING PROTEIN 1	coord: 13..261
IPR034219	ZCRB1, RNA recognition motif	CDD	cd12393	RRM_ZCRB1	coord: 68..145 e-value: 1.4016E-39 score: 130.513
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 54..151

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy3G059010.1	Chy3G059010.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0032502	developmental process
biological_process	GO:0000398	mRNA splicing, via spliceosome
biological_process	GO:0051302	regulation of cell division
cellular_component	GO:0005689	U12-type spliceosomal complex
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding