Chy3G058950 (gene) Cucumber (hystrix) v1

Overview


Name	Chy3G058950
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	Shugoshin_C domain-containing protein
Location	chrH03: 12604517 .. 12606458 (-)
RNA-Seq Expression	Chy3G058950
Synteny	Chy3G058950

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TCGCATAATTGAGATAAGTGGAAATGAGTTAGAGAAATTGAGAACCAATATTCAGAAATTGCAGCAGCAGAACATGCAACTTGCCCAAACAAAACAGTCAAATGCTAGCGGTAATTTTAAATCTGCTTCTATCTGTCTTGAGTTTCCATTGTATCACTTGCTCATGGGAAAATAGTAACCTAGAAACTAAATTTAATACTTGGAATGCGTTTTTTTTTTTTTTTTTCAGGAACTGAATTCAAGTAAAGATCGGGTGAGATAAATTTCTGTAATCTGAAATTTGATTTAGTTTGCACATCAAACTCCCTTTAGGTTGCTGCAACGGAAACTAATTATATTTTATGCAGTTAAAAAGCGCTTCAGCATGAGCTTGGATGTAAAAATGGCATTCTTATGTCCAGAAAGCTGGATTTGGAGGTTACTTCGATTCCTTTTAGTCATTTCAAAGTTGCAATTGAGTGTATTGATTACTGACACTGAAATTTTCTTCCCAGAGTAAAGGGAAATCAGCAACAATTCAACCTGGAGAGGTGCATTAAACAATACTATTGTTATTCTTTAGTATATTTCTTAGGTTACTTACGCATTTCTTTTCTCTACCTCAAGGTAGGGACCACCGAATGTAATGAGGCAGAGGAATCTACAACTGCAAATCAGGATAACAGGCCTTGCAAATCTTAACAGGCGACGGCAATCCAGACGACAATGTAATTGACAGTGCACTAATTACCTTCAGCTTCAAGATATACATATTGTCGTTTTTTGAAAACCAATTCTCTTCTGAGTGCAGCTTTTGGCACGTCAAGTCTTCAGACAGAAGTTCCAAAGATCGAAGCAAAAGGTTTTTTTTCGTGGATTTTTGCTTTATTTGGGTTTATCTGATTTTAGCATATTAAAGATAAATCAACCATGATCTTGGTTTAATTCTGATAGGCCTTGTTTGAGACAGCAGCCTGCAAAGTTCAAAACCGAGGAACCTCTGGCTGCCAATGATATCTTGGAAACAGAAATTTCCAATTCTAATGATGCTTCTCAATGTAAAGAAACTTCAGTTCTACAAACAGAGGTGGAAAAGGTTGAAAGCAAGAGGTTAGTGGCATGGATATTTAGTTGCTTTATTTGGGTTTTGTTTTCAGGATGTGCTCAAAATGATATAGCATAAGTACATACTGAACATTAGCTTCATTGAAATTTTCAATAGGCCTTGTTCGCGAAGGCAGTCTGCAAGATTCAAAGCTGAGGAACCAGTTACTACAAATGACTTACACCAAATGGAAACTTCGGATTCTACCAATGCTTCTCAATGCCAGGAGACATCAGTTCTTCAAGCAGAGAATCTGAAGGTTGAAGGCAAAAGGTCCGTTCGTGGATATTTAATTGCTTTGTTTGGCTTCATTTCTAAAAACTATTCCAGATAATATAGCATACACGAGATCAATTGACATGAGCTTTACTGACTTTCTTATCAGGCCTTGTTTGAGAAGGCAGTCTACAAGATTCAAACTCGAGGAACCAGTGGCCACCAAAGACTCACTTGAGATTGAAAATTCCAATTCAACCAGTCCTGCTTTTCCATGCAAAGAGACCAAGTGTAAAGTTGTTCCAACTTCATCAGTAGGAAAAGAAGATTATGGCAATTCTATTGATAGATCAGAAGTTCAAGAATGTCGGAGGACATCTTTGGTAGACCGTCAAGGCGAGCTGCTGAGAAAGTTATCTCCTATAAGGAAATTCCACTTAATGTCAAGATGCGCAGACAGGTATGATTAATCCTAACCAAAATTGCTTCGTCCTGTTGTCTAGAGGAGAGATTTGTGATATTAGTAGATATTGAAGACAAGACTGCAACACTAGTTTTGTATCTGTATTCTTTGATAGATTAGATTCTGCTCGTACTGTAAAAAGCTCTAGTTTGCTTCCTTGTACCTTAAGACTTAAATGA

mRNA sequence

TCGCATAATTGAGATAAGTGGAAATGAGTTAGAGAAATTGAGAACCAATATTCAGAAATTGCAGCAGCAGAACATGCAACTTGCCCAAACAAAACAGTCAAATGCTAGCGGTTACTTACGCATTTCTTTTCTCTACCTCAAGGCCTTGCAAATCTTAACAGGCGACGGCAATCCAGACGACAATGTAATTGACAGTGCACTAATTACCTTCAGCTTCAAGATATACATATTGTCGTTTTTTGAAAACCAATTCTCTTCTGAGTGCAGCTTTTGGCACGTCAAGTCTTCAGACAGAAGTTCCAAAGATCGAAGCAAAAGGCCTTGTTTGAGACAGCAGCCTGCAAAGTTCAAAACCGAGGAACCTCTGGCTGCCAATGATATCTTGGAAACAGAAATTTCCAATTCTAATGATGCTTCTCAATGTAAAGAAACTTCAGTTCTACAAACAGAGGTGGAAAAGGTTGAAAGCAAGAGGCCTTGTTCGCGAAGGCAGTCTGCAAGATTCAAAGCTGAGGAACCAGTTACTACAAATGACTTACACCAAATGGAAACTTCGGATTCTACCAATGCTTCTCAATGCCAGGAGACATCAGTTCTTCAAGCAGAGAATCTGAAGGTTGAAGGCAAAAGGCCTTGTTTGAGAAGGCAGTCTACAAGATTCAAACTCGAGGAACCAGTGGCCACCAAAGACTCACTTGAGATTGAAAATTCCAATTCAACCAGTCCTGCTTTTCCATGCAAAGAGACCAAGTGTAAAGTTGTTCCAACTTCATCAGTAGGAAAAGAAGATTATGGCAATTCTATTGATAGATCAGAAGTTCAAGAATGTCGGAGGACATCTTTGGTAGACCGTCAAGGCGAGCTGCTGAGAAAGTTATCTCCTATAAGGAAATTCCACTTAATGTCAAGATGCGCAGACAGATTAGATTCTGCTCGTACTGTAAAAAGCTCTAGTTTGCTTCCTTGTACCTTAAGACTTAAATGA

Coding sequence (CDS)

TCGCATAATTGAGATAAGTGGAAATGAGTTAGAGAAATTGAGAACCAATATTCAGAAATTGCAGCAGCAGAACATGCAACTTGCCCAAACAAAACAGTCAAATGCTAGCGGTTACTTACGCATTTCTTTTCTCTACCTCAAGGCCTTGCAAATCTTAACAGGCGACGGCAATCCAGACGACAATGTAATTGACAGTGCACTAATTACCTTCAGCTTCAAGATATACATATTGTCGTTTTTTGAAAACCAATTCTCTTCTGAGTGCAGCTTTTGGCACGTCAAGTCTTCAGACAGAAGTTCCAAAGATCGAAGCAAAAGGCCTTGTTTGAGACAGCAGCCTGCAAAGTTCAAAACCGAGGAACCTCTGGCTGCCAATGATATCTTGGAAACAGAAATTTCCAATTCTAATGATGCTTCTCAATGTAAAGAAACTTCAGTTCTACAAACAGAGGTGGAAAAGGTTGAAAGCAAGAGGCCTTGTTCGCGAAGGCAGTCTGCAAGATTCAAAGCTGAGGAACCAGTTACTACAAATGACTTACACCAAATGGAAACTTCGGATTCTACCAATGCTTCTCAATGCCAGGAGACATCAGTTCTTCAAGCAGAGAATCTGAAGGTTGAAGGCAAAAGGCCTTGTTTGAGAAGGCAGTCTACAAGATTCAAACTCGAGGAACCAGTGGCCACCAAAGACTCACTTGAGATTGAAAATTCCAATTCAACCAGTCCTGCTTTTCCATGCAAAGAGACCAAGTGTAAAGTTGTTCCAACTTCATCAGTAGGAAAAGAAGATTATGGCAATTCTATTGATAGATCAGAAGTTCAAGAATGTCGGAGGACATCTTTGGTAGACCGTCAAGGCGAGCTGCTGAGAAAGTTATCTCCTATAAGGAAATTCCACTTAATGTCAAGATGCGCAGACAGATTAGATTCTGCTCGTACTGTAAAAAGCTCTAGTTTGCTTCCTTGTACCTTAAGACTTAAATGA

Protein sequence

SHN*DKWK*VREIENQYSEIAAAEHATCPNKTVKC*RLLTHFFSLPQGLANLNRRRQSRRQCN*QCTNYLQLQDIHIVVF*KPILF*VQLLARQVFRQKFQRSKQKALFETAACKVQNRGTSGCQ*YLGNRNFQF**CFSM*RNFSSTNRGGKG*KQEALFAKAVCKIQS*GTSYYK*LTPNGNFGFYQCFSMPGDISSSSRESEG*RQKALFEKAVYKIQTRGTSGHQRLT*D*KFQFNQSCFSMQRDQV*SCSNFISRKRRLWQFY**IRSSRMSEDIFGRPSRRAAEKVISYKEIPLNVKMRRQIRFCSYCKKL*FASLYLKT*MX

Homology

[Close]

BLAST of Chy3G058950 vs. ExPASy Swiss-Prot
Match: E3VXF2 (Shugoshin-1 OS=Oryza sativa subsp. japonica OX=39947 GN=SGO1 PE=2 SV=1)

HSP 1 Score: 50.8 bits (120), Expect = 3.3e-05
Identity = 21/25 (84.00%), Postives = 25/25 (100.00%), Query Frame = 0


Query: 282 GRPSRRAAEKVISYKEIPLNVKMRR 307
           GRPSRRAAEK++SYKE+PLN+KMRR
Sbjct: 461 GRPSRRAAEKIVSYKEVPLNIKMRR 485

[Close]

BLAST of Chy3G058950 vs. ExPASy TrEMBL
Match: A0A0A0LMD0 (Shugoshin_C domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G326470 PE=3 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 5.0e-04
Identity = 26/27 (96.30%), Postives = 27/27 (100.00%), Query Frame = 0


Query: 282 GRPSRRAAEKVISYKEIPLNVKMRRQI 309
           GRPSRRAAEKVISYKEIPLNVKMRRQ+
Sbjct: 394 GRPSRRAAEKVISYKEIPLNVKMRRQV 420

[Close]

BLAST of Chy3G058950 vs. NCBI nr
Match: KZV48033.1 (hypothetical protein F511_21454 [Dorcoceras hygrometricum])

HSP 1 Score: 53.1 bits (126), Expect = 1.26e-04
Identity = 27/36 (75.00%), Postives = 28/36 (77.78%), Query Frame = 0


Query: 271 IRSSRMSEDIFGRPSRRAAEKVISYKEIPLNVKMRR 306
           I  S  S   FGRPSRRAAEKV SYKEIPLNVK+RR
Sbjct: 102 ISESNKSRTSFGRPSRRAAEKVQSYKEIPLNVKLRR 137

[Close]

BLAST of Chy3G058950 vs. NCBI nr
Match: XP_038884301.1 (SHUGOSHIN 2 [Benincasa hispida])

HSP 1 Score: 55.1 bits (131), Expect = 2.55e-04
Identity = 27/27 (100.00%), Postives = 27/27 (100.00%), Query Frame = 0


Query: 282 GRPSRRAAEKVISYKEIPLNVKMRRQI 308
           GRPSRRAAEKVISYKEIPLNVKMRRQI
Sbjct: 397 GRPSRRAAEKVISYKEIPLNVKMRRQI 423

[Close]

BLAST of Chy3G058950 vs. NCBI nr
Match: XP_031736418.1 (SHUGOSHIN 2 isoform X2 [Cucumis sativus])

HSP 1 Score: 54.7 bits (130), Expect = 3.22e-04
Identity = 26/27 (96.30%), Postives = 27/27 (100.00%), Query Frame = 0


Query: 282 GRPSRRAAEKVISYKEIPLNVKMRRQI 308
           GRPSRRAAEKVISYKEIPLNVKMRRQ+
Sbjct: 368 GRPSRRAAEKVISYKEIPLNVKMRRQV 394

[Close]

BLAST of Chy3G058950 vs. NCBI nr
Match: XP_011649425.1 (SHUGOSHIN 2 isoform X1 [Cucumis sativus] >KGN62194.1 hypothetical protein Csa_006836 [Cucumis sativus])

HSP 1 Score: 54.7 bits (130), Expect = 3.39e-04
Identity = 26/27 (96.30%), Postives = 27/27 (100.00%), Query Frame = 0


Query: 282 GRPSRRAAEKVISYKEIPLNVKMRRQI 308
           GRPSRRAAEKVISYKEIPLNVKMRRQ+
Sbjct: 394 GRPSRRAAEKVISYKEIPLNVKMRRQV 420

[Close]

BLAST of Chy3G058950 vs. NCBI nr
Match: XP_008456542.1 (PREDICTED: shugoshin-1 isoform X2 [Cucumis melo])

HSP 1 Score: 53.5 bits (127), Expect = 7.56e-04
Identity = 25/27 (92.59%), Postives = 27/27 (100.00%), Query Frame = 0


Query: 282 GRPSRRAAEKVISYKEIPLNVKMRRQI 308
           GRPSRRAAEKVISYKEIP+NVKMRRQ+
Sbjct: 364 GRPSRRAAEKVISYKEIPVNVKMRRQV 390

The following BLAST results are available for this feature:

BLAST of Chy3G058950 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
E3VXF2	3.3e-05	84.00	Shugoshin-1 OS=Oryza sativa subsp. japonica OX=39947 GN=SGO1 PE=2 SV=1	[more]

BLAST of Chy3G058950 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LMD0	5.0e-04	96.30	Shugoshin_C domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G326470...	[more]

BLAST of Chy3G058950 vs. NCBI nr


Match Name	E-value	Identity	Description
KZV48033.1	1.26e-04	75.00	hypothetical protein F511_21454 [Dorcoceras hygrometricum]	[more]
XP_038884301.1	2.55e-04	100.00	SHUGOSHIN 2 [Benincasa hispida]	[more]
XP_031736418.1	3.22e-04	96.30	SHUGOSHIN 2 isoform X2 [Cucumis sativus]	[more]
XP_011649425.1	3.39e-04	96.30	SHUGOSHIN 2 isoform X1 [Cucumis sativus] >KGN62194.1 hypothetical protein Csa_00...	[more]
XP_008456542.1	7.56e-04	92.59	PREDICTED: shugoshin-1 isoform X2 [Cucumis melo]	[more]

BLAST of Chy3G058950 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011515	Shugoshin, C-terminal	PFAM	PF07557	Shugoshin_C	coord: 263..287 e-value: 1.3E-11 score: 44.1

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy3G058950.1	Chy3G058950.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045144	meiotic sister chromatid segregation
biological_process	GO:0045132	meiotic chromosome segregation
cellular_component	GO:0000775	chromosome, centromeric region
cellular_component	GO:0005634	nucleus