Chy3G058740 (gene) Cucumber (hystrix) v1

Overview
NameChy3G058740
Typegene
OrganismCucumis hystrix (Cucumber (hystrix) v1)
DescriptionUnknown protein
LocationchrH03: 12432703 .. 12434579 (+)
RNA-Seq ExpressionChy3G058740
SyntenyChy3G058740
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
AACTGACGCTGATATTCTTTATGCGAGTGGGAAAGAAACAACAAACTATAAATTTTCCATGATCATGAAGCTCCAATACCTACTGCAGCGAAGTTTGAAAGAACTAAATATATTTCAGGTAGACGCCAGAAAAAAGCTAAGATTAGGGTTCAGGAGAATGGTGGGTGTTTAGTCCGATCAGTAGAAAGGTTGCCGTGGGGCAGCGGCGCTGGACTGCGGAGGCGGCGTAGTGCAGTGGTGGCGGAGAAGGACAGTGGCAAGGAGCGGCTGCCGTGCGTAGGTTAGAGGTGTGTGCTGGGTGGAGCTCCAGTCGTGTAAAGAAGAAAAATTTGAGGGTTTTTTTTTTTCACTAAACTAACGTATACCTACAATCTATGCTACGTACCAAATTACCAAAATATCCATGAAAAATATAGTTTTTTTTTTTCCAAATAATGTTATTTTTAAAAAATATGGTAAAAAATTAGATATAGTGTATACTACGGTAAAAAAAAAAATAGAGTAGTAAATTACTAAAATCCTACCTGTGTTGATCGAACAAGGCACTGATGTCGTGGACCTTGTCCTTGACTCCAATATCATCTCGCTTTGAAGTTGTGGGCTGAGTACACAACTTAACCTCGACTTCACTTATTATTTTTAAAAAAATAAAAAAAATAAAAAATAAAGTTGCGTTTAATCATTGAAAATATAATAGATTAATAAAAATAAATAAACTTATGAGAGAGTTTTTTACCATTCCAAATCATATAGCAAACCTTTAACTGATTTCTAAAAATATTATCAAATTTTGTGTATTGAAAGTTTTGGAATCTTTTAAATATTTATCCAAGTTTAAAAGTTAAATTCCAAATCCCAAATTGCGACCAAATTGGGTCACACCACAAACATCATCCCAAGTCACCAGAATCCATAGATACTTGAAATGAGCAACGAGAAGTTACGAGACTTAGAACGTGAAAAGGGAGCAAGAAGAAGAAAGGCGAAGAAGAAGAAGAAAGGCAAGCAGTGGAACTCTTGGGTACAAGGAAGATGCGAGAAATAGGAAGGAAAATATAAGTTCAGATCAGAGTGGACTGACCTCCAGTGCAGACGAGGTTATTTTGGTAAAAACTCCTGGCATCATCTAAAATCAACGTTTGGTTGAAGGGTTTATCGCTGAAGCAATGGTTTTGTATAAGCCTGGGTTTTTTAAAAGGAATCTCTCCTTCTCCAGGTAAGTCGCCTCCTTTTCTCTGAATTTTGTTGATATCTTCTTCTTTCAAATTCTAGATGAATTCCGAGTTTTTTTTCGAAATAGGCGATTCATGTGTGAATTTTTCAATGTAGTTTAAGATGATTGGTTAGACCCTGATTTCAATTATAGGCTTTAAACCATTATGGAGAGATAAATGGTAGCAAAGTTTTACGCCCCCCAAAACTTAGAAGTCGTTTTGGCTTGAACAATAAGAGATTGGGATTCAGACTTTTGACCTGTTGGTAGCTCAGTTGTGTTCATGTTGGTAAAACTTGGACGTTCTTTGAGAACAGTTTCCAAATAACAAGGCCTTAATCTTCCGTTGACAATTTTGTGCATCCACTAAGATGTCATGAATGTTAGACTTGGCCTAAGGCTTACCTTTATGCTCAAATTTCTCATGGTTTTGCCCTCCAATTCAATTTTGGTTGAGTTATTTGCCAATTTTGGATTGCTTTGTGTTGAATCAAATGAATTTTTTGGGTGTTTAGACCATCTGAGATCTGAGAGGTATAGTTTAGTTAAATGATGGGAAGACGTTTCTGGTTTATCCCATGCAGGTAGGGGCGACACTCATCAAACCACCCTCCAAATTTCCACGCCTCCATTGAACTCACTTATGATTTACATACACATATAG

mRNA sequence

AACTGACGCTGATATTCTTTATGCGAACGCCAGAAAAAAGCTAAGATTAGGGTTCAGGAGAATGGTGGGTGTTTAGTCCGATCAGTAGAAAGGTTGCCGTGGGGCAGCGGCGCTGGACTGCGGAGGCGGCGTAGTGCAGTGGTGGCGGAGAAGGACAGTGGCAAGGAGCGGCTGCCGTGCGTAGGAATCTCTCCTTCTCCAGGTAGGGGCGACACTCATCAAACCACCCTCCAAATTTCCACGCCTCCATTGAACTCACTTATGATTTACATACACATATAG

Coding sequence (CDS)

AACTGACGCTGATATTCTTTATGCGAACGCCAGAAAAAAGCTAAGATTAGGGTTCAGGAGAATGGTGGGTGTTTAGTCCGATCAGTAGAAAGGTTGCCGTGGGGCAGCGGCGCTGGACTGCGGAGGCGGCGTAGTGCAGTGGTGGCGGAGAAGGACAGTGGCAAGGAGCGGCTGCCGTGCGTAGGAATCTCTCCTTCTCCAGGTAGGGGCGACACTCATCAAACCACCCTCCAAATTTCCACGCCTCCATTGAACTCACTTATGATTTACATACACATATAG

Protein sequence

N*R*YSLCERQKKAKIRVQENGGCLVRSVERLPWGSGAGLRRRRSAVVAEKDSGKERLPCVGISPSPGRGDTHQTTLQISTPPLNSLMIYIHI*
Homology
[Close]
BLAST of Chy3G058740 vs. ExPASy TrEMBL
Match: A0A0A0LMB9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G385040 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 1.4e-07
Identity = 30/32 (93.75%), Postives = 30/32 (93.75%), Query Frame = 0 

Query: 62 GISPSPGRGDTHQTTLQISTPPLNSLMIYIHI 94
          GISPSPGRGD HQTTLQISTPPLNS MIYIHI
Sbjct: 57 GISPSPGRGDAHQTTLQISTPPLNSRMIYIHI 88

[Close]
BLAST of Chy3G058740 vs. NCBI nr
Match: KAE8652225.1 (hypothetical protein Csa_022371 [Cucumis sativus])

HSP 1 Score: 104 bits (260), Expect = 5.11e-27
Identity = 60/84 (71.43%), Postives = 61/84 (72.62%), Query Frame = 0 

Query: 12 KKAKIRVQENGGCLVRSVERLPWGSGA-GLRRRRSAVVAEKDSGKERLPC-VGISPSPGR 71
          +KAKI VQENGGCLVRSVE LPWGSG     RRR A          R  C VGISPSPGR
Sbjct: 15 EKAKIGVQENGGCLVRSVETLPWGSGVVQWWRRRMA----------RSGCRVGISPSPGR 74

Query: 72 GDTHQTTLQISTPPLNSLMIYIHI 93
          GD HQTTLQISTPPLNS MIYIHI
Sbjct: 75 GDAHQTTLQISTPPLNSRMIYIHI 88

The following BLAST results are available for this feature:
BLAST of Chy3G058740 vs.
Match NameE-valueIdentityDescription
BLAST of Chy3G058740 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LMB91.4e-0793.75Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G385040 PE=4 SV=1[more]
BLAST of Chy3G058740 vs. NCBI nr
Match NameE-valueIdentityDescription
KAE8652225.15.11e-2771.43hypothetical protein Csa_022371 [Cucumis sativus][more]
BLAST of Chy3G058740 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 56..76

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Chy3G058740.1Chy3G058740.1mRNA