Chy3G058200 (gene) Cucumber (hystrix) v1

Overview
NameChy3G058200
Typegene
OrganismCucumis hystrix (Cucumber (hystrix) v1)
DescriptionUnknown protein
LocationchrH03: 11624182 .. 11624367 (-)
RNA-Seq ExpressionChy3G058200
SyntenyChy3G058200
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGACGATGGAAAACAGCAAGAAGATGGTGAGAATGACAATGGGGAATCTCGAATCAATACACTGTACTGCGGTAGAGCTTTCCCCATGTTAGAGTTCAAAATGGGCGCAGGCGCTCTCGAACGTGAGGAGAAATGTAAAAAACGACACCAGTCCCAGTTTCAGCTCTTTCTTAGTTCTGAGTGA

mRNA sequence

ATGGACGATGGAAAACAGCAAGAAGATGGTGAGAATGACAATGGGGAATCTCGAATCAATACACTGTACTGCGGTAGAGCTTTCCCCATGTTAGAGTTCAAAATGGGCGCAGGCGCTCTCGAACGTGAGGAGAAATGTAAAAAACGACACCAGTCCCAGTTTCAGCTCTTTCTTAGTTCTGAGTGA

Coding sequence (CDS)

ATGGACGATGGAAAACAGCAAGAAGATGGTGAGAATGACAATGGGGAATCTCGAATCAATACACTGTACTGCGGTAGAGCTTTCCCCATGTTAGAGTTCAAAATGGGCGCAGGCGCTCTCGAACGTGAGGAGAAATGTAAAAAACGACACCAGTCCCAGTTTCAGCTCTTTCTTAGTTCTGAGTGA

Protein sequence

MDDGKQQEDGENDNGESRINTLYCGRAFPMLEFKMGAGALEREEKCKKRHQSQFQLFLSSE*
Homology
[Close]
BLAST of Chy3G058200 vs. ExPASy TrEMBL
Match: A0A0A0KDW4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G399740 PE=4 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 2.6e-18
Identity = 47/56 (83.93%), Postives = 53/56 (94.64%), Query Frame = 0 

Query: 1  MDDGKQQ-EDGENDNGESRINTLYCGRAFPMLEFKMGAGALEREEKCKKRHQSQFQ 56
          MDDGKQQ EDG+NDNG+SR+N LYCG AFPMLEFK+GAGALEREEKC+KRH+SQFQ
Sbjct: 1  MDDGKQQEEDGDNDNGKSRVNILYCGGAFPMLEFKIGAGALEREEKCRKRHKSQFQ 56

[Close]
BLAST of Chy3G058200 vs. NCBI nr
Match: KGN47748.1 (hypothetical protein Csa_003408 [Cucumis sativus])

HSP 1 Score: 101 bits (252), Expect = 1.44e-26
Identity = 47/56 (83.93%), Postives = 53/56 (94.64%), Query Frame = 0 

Query: 1  MDDGKQQE-DGENDNGESRINTLYCGRAFPMLEFKMGAGALEREEKCKKRHQSQFQ 55
          MDDGKQQE DG+NDNG+SR+N LYCG AFPMLEFK+GAGALEREEKC+KRH+SQFQ
Sbjct: 1  MDDGKQQEEDGDNDNGKSRVNILYCGGAFPMLEFKIGAGALEREEKCRKRHKSQFQ 56

The following BLAST results are available for this feature:
BLAST of Chy3G058200 vs.
Match NameE-valueIdentityDescription
BLAST of Chy3G058200 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KDW42.6e-1883.93Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G399740 PE=4 SV=1[more]
BLAST of Chy3G058200 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN47748.11.44e-2683.93hypothetical protein Csa_003408 [Cucumis sativus][more]
BLAST of Chy3G058200 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Chy3G058200.1Chy3G058200.1mRNA