Chy3G057910 (gene) Cucumber (hystrix) v1

Overview
NameChy3G057910
Typegene
OrganismCucumis hystrix (Cucumber (hystrix) v1)
DescriptionUnknown protein
LocationchrH03: 11292321 .. 11293140 (+)
RNA-Seq ExpressionChy3G057910
SyntenyChy3G057910
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
GAAATACATTTCCAGTCAGCTGCCTTAAGTGGGCTGACCTTGGGAGAGAATACCTTGAGGTCGTCAAGGGCAATCTGCCTTAAGTGGGCTAATGTGTGAATTTTTTTCGTTTCTAGCGCTTTTTCGTGCTTGATTTCAACGATCAAGCACTTACTAGATTTGTTGAGCATCAGATGCTCACATCTTTTAAAGAGTTTAGGGACAACTGTCATAGACATTTCAAACGGTACAACGACCTGGAACAGACATGTGCCAACCCACCTAACATATTGGTGGGACGTATGGAAGATTGACACTTCTTGTGCGATCACTACATGAGCCGTGCATTTCAGGTGAGATTTACGAATTCCAATGATATGTGTTATTTCACTTAATTTTCTTAACACGCGTGTGTACTTTTAACAAACATTTTCATGCAGGAGCAATCACAGACGAAAAAGGCTGCTAGGCAAAAGCAGCCTTACAGTCATAGTAATGGGTCGAAGTCGTTTCTACAATGACAGCATGACCTCACTCAAGAACGAGCTCTACCAGTCGAACGGCTAGAATTATTCAGAGAAACCCACACTCGGAGTGGAGAATTCATTTCGCAGGCGGCTGCGGATGTGCATGTTAGATTGAACTTGATTTTGTCTAAATTATGTACTTATACTTCTCCAATACATAACTTGCATAAAATTTTATTTGTTGTAGAGTCAAATGCTGGAACTTCAGTCCCAGCCTACCTCAGAGAGTTCTCAGCCACTCTCTAATGATGATATTTGCGAGATCATTTTGGGTAAGCGTCCAGGCTACTCAAAAGGTCTTGGTTGGGGACCCA

mRNA sequence

GAAATACATTTCCAGTCAGCTGCCTTAAGTGGGCTGACCTTGGGAGAGAATACCTTGAGGTCGTCAAGGGCAATCTCGCTTTTTCGTGCTTGATTTCAACGATCAAGCACTTACTAGATTTGTTGAGCATCAGATGCTCACATCTTTTAAAGAGTTTAGGGACAACTGTCATAGACATTTCAAACGGTACAACGACCTGGAACAGACATGTGCCAACCCACCTAACATATTGGTGGGACGTATGGAAGATTGACACTTCTTGTGCGATCACTACATGAGCCGTGCATTTCAGCATGACCTCACTCAAGAACGAGCTCTACCAGTCGAACGGCTAGAATTATTCAGAGAAACCCACACTCGGAGTGGAGAATTCATTTCGCAGGCGGCTGCGGATGTGCATAGTCAAATGCTGGAACTTCAGTCCCAGCCTACCTCAGAGAGTTCTCAGCCACTCTCTAATGATGATATTTGCGAGATCATTTTGGGTAAGCGTCCAGGCTACTCAAAAGGTCTTGGTTGGGGACCCA

Coding sequence (CDS)

GAAATACATTTCCAGTCAGCTGCCTTAAGTGGGCTGACCTTGGGAGAGAATACCTTGAGGTCGTCAAGGGCAATCTCGCTTTTTCGTGCTTGATTTCAACGATCAAGCACTTACTAGATTTGTTGAGCATCAGATGCTCACATCTTTTAAAGAGTTTAGGGACAACTGTCATAGACATTTCAAACGGTACAACGACCTGGAACAGACATGTGCCAACCCACCTAACATATTGGTGGGACGTATGGAAGATTGACACTTCTTGTGCGATCACTACATGAGCCGTGCATTTCAGCATGACCTCACTCAAGAACGAGCTCTACCAGTCGAACGGCTAGAATTATTCAGAGAAACCCACACTCGGAGTGGAGAATTCATTTCGCAGGCGGCTGCGGATGTGCATAGTCAAATGCTGGAACTTCAGTCCCAGCCTACCTCAGAGAGTTCTCAGCCACTCTCTAATGATGATATTTGCGAGATCATTTTGGGTAAGCGTCCAGGCTACTCAAAAGGTCTTGGTTGGGGACCCA

Protein sequence

EIHFQSAALSGLTLGENTLRSSRAISLFRA*FQRSSTY*IC*ASDAHIF*RV*GQLS*TFQTVQRPGTDMCQPT*HIGGTYGRLTLLVRSLHEPCISA*PHSRTSSTSRTARIIQRNPHSEWRIHFAGGCGCA*SNAGTSVPAYLREFSATL***YLRDHFG*ASRLLKRSWLGTX
Homology
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BLAST of Chy3G057910 vs. NCBI nr
Match: TYK01281.1 (CACTA en-spm transposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 48.9 bits (115), Expect = 3.32e-04
Identity = 35/85 (41.18%), Postives = 39/85 (45.88%), Query Frame = 0 

Query: 9  LSGLTLGENTLRSSRAISLFRA*FQRSSTY*IC*ASDAHIF*RV*GQLS*TFQTVQRPGT 68
          +SGL LGEN LR SRAI  F       S            F    G     ++    P  
Sbjct: 13 ISGLMLGENILRLSRAIYRFVEHQMLMS------------FKMFKGDYHRHYKKYSDP-E 72

Query: 69 DMCQPT*HIGGTYGRLTLLVRSLHE 93
            CQP  HIG  YGRLTL +RSLHE
Sbjct: 73 QACQPIAHIGRMYGRLTLPMRSLHE 84

The following BLAST results are available for this feature:
BLAST of Chy3G057910 vs.
Match NameE-valueIdentityDescription
BLAST of Chy3G057910 vs.
Match NameE-valueIdentityDescription
BLAST of Chy3G057910 vs. NCBI nr
Match NameE-valueIdentityDescription
TYK01281.13.32e-0441.18CACTA en-spm transposon protein [Cucumis melo var. makuwa][more]
BLAST of Chy3G057910 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Chy3G057910.1Chy3G057910.1mRNA