Chy3G057560 (gene) Cucumber (hystrix) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCATCCAGGGAAGGATACGAATCACCGGTTGAGCAAGTCATTGAAGGACCAACGACAAGTGGACGTGCTGCACAACGTTCCCCATCCCGACGGACGAAGGCAACAACGTCGACAACGAGGGACGCTGTCGAAGAACATTTTGCAACCTTGGAGGGAAAATTGGAGGAAGTGAAGAAGAAATTAGGCAAGACGAGCGAGTTGATGGAGGAGCTACTCGTAGATAATGCCGATGTCAAAAAAGCCACTAAGGCTATGATCAAAGGCCTTAGAGACTCTCACGACAAAGATATCTACGACCTCATTGTGGAGGTAACCAACATGCGCAAATTCATGGAAGATGAGCTCCATGCCTTGCGTAAGGACGTCGACGAGGTACGTGCCGAATGTCTATCTAGACATAATGCTAATGGTTTGGCATCCACTAGCATATCACACACCATGGCTAGCACACATCACATAAAAGTGCCAAAGCCCGAGATGTATAACGACACGAGGAATGCCACGATGGTGGAGAACTTCCTATTCGGCCTTGAGCAATATTACGAGGCCTTAGGAATTGTCGACGATGGTGCCAAAATTGCGAATACCTCAAATTTCATACGCGAAGCGGCACAACTTTGGTGGCGTAGGAAGCACGCAGAACGGGAAAAGGATCGAAGCATCTTACGAACGTGGGAGCAATTCAAAGGTGAGCTTTGAAAACACTTTATCCCACGTAATGCAGAGATGGAGGCCTGTGGTAAACTCAGACGGTTGGGACAAACCGGAAGCATTCCCGAGTACGTGAAAGAATTCACAACCCTCATGTTGGAAATCGATGGCATGTCCGACAAAGACGCACTCTTTCATTTCAGAGATGGTCTCAAAGATTGGGAAAGACTTGAGCTCGATCGTCGGAATGTGCAGAACCTTGATGATGCCATTGCCGCCGTAGAGATGCTCACGGATTTCCGATCCAAGGAGAAGAGAACCCATGAAAATGAAGGAGAAGTGTCGGAGTCAAGCAAGGAACATGCTCATAAAGCGAGGAAAGGCCACCAGGATAGTGGAAGGCACGGGAAGGCCACGGAAGAGAAGAAAGGTACATCTCTCAAAACCCCTAGACCTTGTTTTCTCTGCAATGGTCCACATTGGGCAAGAGATTCTCCACAAAAGAAATTGTTGAGTACGTTGGTGGCAAAGCTCCACGAAGGAGAAGAGGAAGCGCCTGTACCGAAGGAGGCACACTTGGGTGGAATTCAATTCCTAAGTGCCATGAAGAACGATTCTTCCTCTAAACAACCCAAGGGAAGAGGTTGGATGTACCTGGAGGCCAAACTCAACAACAAGGCTGCCTTACCTATGCTGGATACCGGCGCAACCAGCAACATCATTGATCTAGAAGAGGCCAAGCGGCTAGGTCTCAAGATCACTAGGAGAGGCGACACTAAGTTGAAGATCATCAGTGCCATGCCCACTCGTAACGTCGGATGGGCAAGAAACGTCGAGACGAGGGTAGGGAAATGGCAAGGTACGCTCGATTTCCTTGGTACGCCTCTAGACGATTGCAAGATTGTCCTAGGGTTGAACTTCTTAGACAAAGCCCATTCCGTAATCAACACACTCAAGAAGACCCTGGAGTTCCCTGACATGCGGAGGGAGGTGCCCCTAAAACGCATGAGGGTGACAAGCCAGGAGAGGCTTAG ATGGCATCCAGGGAAGGATACGAATCACCGGTTGAGCAAGTCATTGAAGGACCAACGACAAGTGGACGTGCTGCACAACGTTCCCCATCCCGACGGACGAAGGCAACAACGTCGACAACGAGGGACGCTGTCGAAGAACATTTTGCAACCTTGGAGGGAAAATTGGAGGAAGTGAAGAAGAAATTAGGCAAGACGAGCGAGTTGATGGAGGAGCTACTCGTAGATAATGCCGATGTCAAAAAAGCCACTAAGGCTATGATCAAAGGCCTTAGAGACTCTCACGACAAAGATATCTACGACCTCATTGTGGAGGTAACCAACATGCGCAAATTCATGGAAGATGAGCTCCATGCCTTGCGTAAGGACGTCGACGAGCTCCACGAAGGAGAAGAGGAAGCGCCTGTACCGAAGGAGGCACACTTGGGTGGAATTCAATTCCTAAGTGCCATGAAGAACGATTCTTCCTCTAAACAACCCAAGGGAAGAGGTTGGATGTACCTGGAGGCCAAACTCAACAACAAGGCTGCCTTACCTATGCTGGATACCGGCGCAACCAGCAACATCATTGATCTAGAAGAGGCCAAGCGGCTAGGTCTCAAGATCACTAGGAGAGGCGACACTAAGTTGAAGATCATCAGTGCCATGCCCACTCGTAACGTCGGATGGGCAAGAAACGTCGAGACGAGGGTAGGGAAATGGCAAGGAGAGGCTTAG ATGGCATCCAGGGAAGGATACGAATCACCGGTTGAGCAAGTCATTGAAGGACCAACGACAAGTGGACGTGCTGCACAACGTTCCCCATCCCGACGGACGAAGGCAACAACGTCGACAACGAGGGACGCTGTCGAAGAACATTTTGCAACCTTGGAGGGAAAATTGGAGGAAGTGAAGAAGAAATTAGGCAAGACGAGCGAGTTGATGGAGGAGCTACTCGTAGATAATGCCGATGTCAAAAAAGCCACTAAGGCTATGATCAAAGGCCTTAGAGACTCTCACGACAAAGATATCTACGACCTCATTGTGGAGGTAACCAACATGCGCAAATTCATGGAAGATGAGCTCCATGCCTTGCGTAAGGACGTCGACGAGCTCCACGAAGGAGAAGAGGAAGCGCCTGTACCGAAGGAGGCACACTTGGGTGGAATTCAATTCCTAAGTGCCATGAAGAACGATTCTTCCTCTAAACAACCCAAGGGAAGAGGTTGGATGTACCTGGAGGCCAAACTCAACAACAAGGCTGCCTTACCTATGCTGGATACCGGCGCAACCAGCAACATCATTGATCTAGAAGAGGCCAAGCGGCTAGGTCTCAAGATCACTAGGAGAGGCGACACTAAGTTGAAGATCATCAGTGCCATGCCCACTCGTAACGTCGGATGGGCAAGAAACGTCGAGACGAGGGTAGGGAAATGGCAAGGAGAGGCTTAG MASREGYESPVEQVIEGPTTSGRAAQRSPSRRTKATTSTTRDAVEEHFATLEGKLEEVKKKLGKTSELMEELLVDNADVKKATKAMIKGLRDSHDKDIYDLIVEVTNMRKFMEDELHALRKDVDELHEGEEEAPVPKEAHLGGIQFLSAMKNDSSSKQPKGRGWMYLEAKLNNKAALPMLDTGATSNIIDLEEAKRLGLKITRRGDTKLKIISAMPTRNVGWARNVETRVGKWQGEA* Homology
BLAST of Chy3G057560 vs. ExPASy TrEMBL
Match: A0A5A7T2W8 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold349G00550 PE=4 SV=1) HSP 1 Score: 134.4 bits (337), Expect = 6.1e-28 Identity = 65/107 (60.75%), Postives = 86/107 (80.37%), Query Frame = 0
BLAST of Chy3G057560 vs. ExPASy TrEMBL
Match: A0A5A7T2W8 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold349G00550 PE=4 SV=1) HSP 1 Score: 80.9 bits (198), Expect = 8.1e-12 Identity = 38/61 (62.30%), Postives = 51/61 (83.61%), Query Frame = 0
HSP 2 Score: 118.2 bits (295), Expect = 4.6e-23 Identity = 102/376 (27.13%), Postives = 134/376 (35.64%), Query Frame = 0
BLAST of Chy3G057560 vs. ExPASy TrEMBL
Match: A0A5D3BYX0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold527G00540 PE=4 SV=1) HSP 1 Score: 102.8 bits (255), Expect = 2.0e-18 Identity = 55/127 (43.31%), Postives = 82/127 (64.57%), Query Frame = 0
BLAST of Chy3G057560 vs. ExPASy TrEMBL
Match: A0A5A7VIG6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold138G00500 PE=4 SV=1) HSP 1 Score: 101.3 bits (251), Expect = 5.8e-18 Identity = 54/127 (42.52%), Postives = 82/127 (64.57%), Query Frame = 0
BLAST of Chy3G057560 vs. ExPASy TrEMBL
Match: A0A5A7THC0 (Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold370G00130 PE=4 SV=1) HSP 1 Score: 91.7 bits (226), Expect = 4.6e-15 Identity = 49/119 (41.18%), Postives = 76/119 (63.87%), Query Frame = 0
BLAST of Chy3G057560 vs. NCBI nr
Match: KAE8637433.1 (hypothetical protein CSA_004611, partial [Cucumis sativus]) HSP 1 Score: 312 bits (800), Expect = 3.68e-102 Identity = 183/332 (55.12%), Postives = 212/332 (63.86%), Query Frame = 0
BLAST of Chy3G057560 vs. NCBI nr
Match: KAE8646814.1 (hypothetical protein Csa_005402 [Cucumis sativus]) HSP 1 Score: 155 bits (393), Expect = 1.24e-41 Identity = 74/107 (69.16%), Postives = 92/107 (85.98%), Query Frame = 0
BLAST of Chy3G057560 vs. NCBI nr
Match: KAA0035961.1 (uncharacterized protein E6C27_scaffold56G001660 [Cucumis melo var. makuwa] >TYK30442.1 uncharacterized protein E5676_scaffold349G00550 [Cucumis melo var. makuwa]) HSP 1 Score: 134 bits (336), Expect = 1.33e-32 Identity = 65/107 (60.75%), Postives = 86/107 (80.37%), Query Frame = 0
BLAST of Chy3G057560 vs. NCBI nr
Match: TYK04320.1 (uncharacterized protein E5676_scaffold527G00540 [Cucumis melo var. makuwa]) HSP 1 Score: 103 bits (257), Expect = 1.13e-23 Identity = 55/127 (43.31%), Postives = 82/127 (64.57%), Query Frame = 0
BLAST of Chy3G057560 vs. NCBI nr
Match: KAA0067893.1 (uncharacterized protein E6C27_scaffold138G00500 [Cucumis melo var. makuwa]) HSP 1 Score: 102 bits (253), Expect = 4.41e-23 Identity = 54/127 (42.52%), Postives = 82/127 (64.57%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
|