Chy3G057560 (gene) Cucumber (hystrix) v1

Overview
NameChy3G057560
Typegene
OrganismCucumis hystrix (Cucumber (hystrix) v1)
DescriptionRetrotrans_gag domain-containing protein
LocationchrH03: 10524260 .. 10525947 (-)
RNA-Seq ExpressionChy3G057560
SyntenyChy3G057560
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCATCCAGGGAAGGATACGAATCACCGGTTGAGCAAGTCATTGAAGGACCAACGACAAGTGGACGTGCTGCACAACGTTCCCCATCCCGACGGACGAAGGCAACAACGTCGACAACGAGGGACGCTGTCGAAGAACATTTTGCAACCTTGGAGGGAAAATTGGAGGAAGTGAAGAAGAAATTAGGCAAGACGAGCGAGTTGATGGAGGAGCTACTCGTAGATAATGCCGATGTCAAAAAAGCCACTAAGGCTATGATCAAAGGCCTTAGAGACTCTCACGACAAAGATATCTACGACCTCATTGTGGAGGTAACCAACATGCGCAAATTCATGGAAGATGAGCTCCATGCCTTGCGTAAGGACGTCGACGAGGTACGTGCCGAATGTCTATCTAGACATAATGCTAATGGTTTGGCATCCACTAGCATATCACACACCATGGCTAGCACACATCACATAAAAGTGCCAAAGCCCGAGATGTATAACGACACGAGGAATGCCACGATGGTGGAGAACTTCCTATTCGGCCTTGAGCAATATTACGAGGCCTTAGGAATTGTCGACGATGGTGCCAAAATTGCGAATACCTCAAATTTCATACGCGAAGCGGCACAACTTTGGTGGCGTAGGAAGCACGCAGAACGGGAAAAGGATCGAAGCATCTTACGAACGTGGGAGCAATTCAAAGGTGAGCTTTGAAAACACTTTATCCCACGTAATGCAGAGATGGAGGCCTGTGGTAAACTCAGACGGTTGGGACAAACCGGAAGCATTCCCGAGTACGTGAAAGAATTCACAACCCTCATGTTGGAAATCGATGGCATGTCCGACAAAGACGCACTCTTTCATTTCAGAGATGGTCTCAAAGATTGGGAAAGACTTGAGCTCGATCGTCGGAATGTGCAGAACCTTGATGATGCCATTGCCGCCGTAGAGATGCTCACGGATTTCCGATCCAAGGAGAAGAGAACCCATGAAAATGAAGGAGAAGTGTCGGAGTCAAGCAAGGAACATGCTCATAAAGCGAGGAAAGGCCACCAGGATAGTGGAAGGCACGGGAAGGCCACGGAAGAGAAGAAAGGTACATCTCTCAAAACCCCTAGACCTTGTTTTCTCTGCAATGGTCCACATTGGGCAAGAGATTCTCCACAAAAGAAATTGTTGAGTACGTTGGTGGCAAAGCTCCACGAAGGAGAAGAGGAAGCGCCTGTACCGAAGGAGGCACACTTGGGTGGAATTCAATTCCTAAGTGCCATGAAGAACGATTCTTCCTCTAAACAACCCAAGGGAAGAGGTTGGATGTACCTGGAGGCCAAACTCAACAACAAGGCTGCCTTACCTATGCTGGATACCGGCGCAACCAGCAACATCATTGATCTAGAAGAGGCCAAGCGGCTAGGTCTCAAGATCACTAGGAGAGGCGACACTAAGTTGAAGATCATCAGTGCCATGCCCACTCGTAACGTCGGATGGGCAAGAAACGTCGAGACGAGGGTAGGGAAATGGCAAGGTACGCTCGATTTCCTTGGTACGCCTCTAGACGATTGCAAGATTGTCCTAGGGTTGAACTTCTTAGACAAAGCCCATTCCGTAATCAACACACTCAAGAAGACCCTGGAGTTCCCTGACATGCGGAGGGAGGTGCCCCTAAAACGCATGAGGGTGACAAGCCAGGAGAGGCTTAG

mRNA sequence

ATGGCATCCAGGGAAGGATACGAATCACCGGTTGAGCAAGTCATTGAAGGACCAACGACAAGTGGACGTGCTGCACAACGTTCCCCATCCCGACGGACGAAGGCAACAACGTCGACAACGAGGGACGCTGTCGAAGAACATTTTGCAACCTTGGAGGGAAAATTGGAGGAAGTGAAGAAGAAATTAGGCAAGACGAGCGAGTTGATGGAGGAGCTACTCGTAGATAATGCCGATGTCAAAAAAGCCACTAAGGCTATGATCAAAGGCCTTAGAGACTCTCACGACAAAGATATCTACGACCTCATTGTGGAGGTAACCAACATGCGCAAATTCATGGAAGATGAGCTCCATGCCTTGCGTAAGGACGTCGACGAGCTCCACGAAGGAGAAGAGGAAGCGCCTGTACCGAAGGAGGCACACTTGGGTGGAATTCAATTCCTAAGTGCCATGAAGAACGATTCTTCCTCTAAACAACCCAAGGGAAGAGGTTGGATGTACCTGGAGGCCAAACTCAACAACAAGGCTGCCTTACCTATGCTGGATACCGGCGCAACCAGCAACATCATTGATCTAGAAGAGGCCAAGCGGCTAGGTCTCAAGATCACTAGGAGAGGCGACACTAAGTTGAAGATCATCAGTGCCATGCCCACTCGTAACGTCGGATGGGCAAGAAACGTCGAGACGAGGGTAGGGAAATGGCAAGGAGAGGCTTAG

Coding sequence (CDS)

ATGGCATCCAGGGAAGGATACGAATCACCGGTTGAGCAAGTCATTGAAGGACCAACGACAAGTGGACGTGCTGCACAACGTTCCCCATCCCGACGGACGAAGGCAACAACGTCGACAACGAGGGACGCTGTCGAAGAACATTTTGCAACCTTGGAGGGAAAATTGGAGGAAGTGAAGAAGAAATTAGGCAAGACGAGCGAGTTGATGGAGGAGCTACTCGTAGATAATGCCGATGTCAAAAAAGCCACTAAGGCTATGATCAAAGGCCTTAGAGACTCTCACGACAAAGATATCTACGACCTCATTGTGGAGGTAACCAACATGCGCAAATTCATGGAAGATGAGCTCCATGCCTTGCGTAAGGACGTCGACGAGCTCCACGAAGGAGAAGAGGAAGCGCCTGTACCGAAGGAGGCACACTTGGGTGGAATTCAATTCCTAAGTGCCATGAAGAACGATTCTTCCTCTAAACAACCCAAGGGAAGAGGTTGGATGTACCTGGAGGCCAAACTCAACAACAAGGCTGCCTTACCTATGCTGGATACCGGCGCAACCAGCAACATCATTGATCTAGAAGAGGCCAAGCGGCTAGGTCTCAAGATCACTAGGAGAGGCGACACTAAGTTGAAGATCATCAGTGCCATGCCCACTCGTAACGTCGGATGGGCAAGAAACGTCGAGACGAGGGTAGGGAAATGGCAAGGAGAGGCTTAG

Protein sequence

MASREGYESPVEQVIEGPTTSGRAAQRSPSRRTKATTSTTRDAVEEHFATLEGKLEEVKKKLGKTSELMEELLVDNADVKKATKAMIKGLRDSHDKDIYDLIVEVTNMRKFMEDELHALRKDVDELHEGEEEAPVPKEAHLGGIQFLSAMKNDSSSKQPKGRGWMYLEAKLNNKAALPMLDTGATSNIIDLEEAKRLGLKITRRGDTKLKIISAMPTRNVGWARNVETRVGKWQGEA*
Homology
BLAST of Chy3G057560 vs. ExPASy TrEMBL
Match: A0A5A7T2W8 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold349G00550 PE=4 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 6.1e-28
Identity = 65/107 (60.75%), Postives = 86/107 (80.37%), Query Frame = 0

Query: 130 EEEAPVPKEAHLGGIQFLSAMKNDSSSKQPKGRGWMYLEAKLNNKAALPMLDTGATSNII 189
           EEE P+   A LGGI++LSAMK++ SSK+P+  G +Y++A  NNKAAL MLD GAT N++
Sbjct: 326 EEEVPIKGTAQLGGIRYLSAMKSE-SSKEPQEGGLLYVDATFNNKAALAMLDAGATHNVM 385

Query: 190 DLEEAKRLGLKITRRGDTKLKIISAMPTRNVGWARNVETRVGKWQGE 237
           D EEAKRLGL+ TRR DT++KIISA   +N+GWA++V+TRVG WQG+
Sbjct: 386 DPEEAKRLGLRTTRRSDTEIKIISAKSMKNIGWAQDVKTRVGGWQGK 431

BLAST of Chy3G057560 vs. ExPASy TrEMBL
Match: A0A5A7T2W8 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold349G00550 PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 8.1e-12
Identity = 38/61 (62.30%), Postives = 51/61 (83.61%), Query Frame = 0

Query: 66  SELMEELLVDNADVKKATKAMIKGLRDSHDKDIYDLIVEVTNMRKFMEDELHALRKDVDE 125
           S LM+EL+ DN ++  A K MIK L DSH K++YD++VEVTN+RKF+E+ELHALRK+VDE
Sbjct: 2   SGLMDELIQDNVEISNAAKEMIKVLGDSHGKEMYDILVEVTNLRKFVEEELHALRKNVDE 61

Query: 126 L 127
           +
Sbjct: 62  V 62


HSP 2 Score: 118.2 bits (295), Expect = 4.6e-23
Identity = 102/376 (27.13%), Postives = 134/376 (35.64%), Query Frame = 0

Query: 42  DAVEEHFATLEGKLEEVKKKLGKTSELMEELLVDNADVKKATKAMIKGLRDSHDKDIYDL 101
           +  +E  A LE  LEEV+ K+GK S  MEEL+ DN ++ K TK MIKGL  S+ K++YDL
Sbjct: 16  EKAKELLAKLEEGLEEVQTKVGKMSGFMEELIQDNMEISKVTKEMIKGLGGSYGKEMYDL 75

Query: 102 IVEVTNMRKFMEDELHALRKDVDELHE--------------------------------- 161
           +VEVTN+RKF+++ELH LRKDVDE HE                                 
Sbjct: 76  LVEVTNLRKFVKEELHVLRKDVDEWHEECHDVENFLFGLEQYYEALGIVDDGANVANAPT 135

Query: 162 ------------------------------------------------------------ 221
                                                                       
Sbjct: 136 FLPKSVELRKHFVPYNADMEARSKLRRLRQTGGIPEYIKEFTTLMLKTEYLSDKDALFHF 195

BLAST of Chy3G057560 vs. ExPASy TrEMBL
Match: A0A5D3BYX0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold527G00540 PE=4 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 2.0e-18
Identity = 55/127 (43.31%), Postives = 82/127 (64.57%), Query Frame = 0

Query: 1   MASREGYESPVEQVIEGPTTSGRAAQRSPSRRTKATTSTTRDAVEEHFATLEGKLEEVKK 60
           MAS+EGYESPVEQV+EGPT  G   QRSPS+R K     T+D  + H A LE   E+V+ 
Sbjct: 1   MASQEGYESPVEQVVEGPTIRGLTTQRSPSKRPKTKALATKDTTDTHLANLEELFEDVQS 60

Query: 61  KLGKTSELMEELLVDNADVKKATKAMIKGLRDSHDKDIYDLIVEVTNMRKFMEDELHALR 120
            +G+ S+  E L+ +N ++  A K MIK +  S  +D+  L  +V N++KF+E E++ L 
Sbjct: 61  TVGRLSDDYEGLVRENVEISAAAKEMIKEIGRSFCRDLNALSKDVANLKKFVEGEIYELH 120

Query: 121 KDVDELH 128
           K+V+ ++
Sbjct: 121 KEVERIY 127

BLAST of Chy3G057560 vs. ExPASy TrEMBL
Match: A0A5A7VIG6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold138G00500 PE=4 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 5.8e-18
Identity = 54/127 (42.52%), Postives = 82/127 (64.57%), Query Frame = 0

Query: 1   MASREGYESPVEQVIEGPTTSGRAAQRSPSRRTKATTSTTRDAVEEHFATLEGKLEEVKK 60
           MAS+EGYESPVEQV+EGPT  G   QRSPS+R K     T+D  + H A LE   E+V+ 
Sbjct: 1   MASQEGYESPVEQVVEGPTIRGLTTQRSPSKRPKTKALATKDTTDTHLANLEELFEDVQS 60

Query: 61  KLGKTSELMEELLVDNADVKKATKAMIKGLRDSHDKDIYDLIVEVTNMRKFMEDELHALR 120
            +G+ S+  E L+ +N ++  A K +IK +  S  +D+  L  +V N++KF+E E++ L 
Sbjct: 61  TVGRLSDDYEGLVRENVEISAAAKEIIKEIGRSFCRDLNALSKDVANLKKFVEGEIYELH 120

Query: 121 KDVDELH 128
           K+V+ ++
Sbjct: 121 KEVERIY 127

BLAST of Chy3G057560 vs. ExPASy TrEMBL
Match: A0A5A7THC0 (Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold370G00130 PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 4.6e-15
Identity = 49/119 (41.18%), Postives = 76/119 (63.87%), Query Frame = 0

Query: 1   MASREGYESPVEQVIEGPTTSGRAAQRSPSRRTKATTSTTRDAVEEHFATLEGKLEEVKK 60
           M++ EG+ SPVEQVIEGP T GR  Q SP+RR+K+     R+ V+     LE  +E+V+ 
Sbjct: 1   MSAEEGHTSPVEQVIEGPVTRGRKEQHSPTRRSKSKGPAVREHVDTRLTNLEQGMEDVQL 60

Query: 61  KLGKTSELMEELLVDNADVKKATKAMIKGLRDSHDKDIYDLIVEVTNMRKFMEDELHAL 120
            +G+ SE+ EEL+ +NA++    K MI+ +  +  K++ +L   VT ++ F+E ELH L
Sbjct: 61  AVGRLSEIFEELVQENAEITSVAKEMIEDMGRTFQKELRELASTVTTLKAFVEGELHDL 119

BLAST of Chy3G057560 vs. NCBI nr
Match: KAE8637433.1 (hypothetical protein CSA_004611, partial [Cucumis sativus])

HSP 1 Score: 312 bits (800), Expect = 3.68e-102
Identity = 183/332 (55.12%), Postives = 212/332 (63.86%), Query Frame = 0

Query: 1   MASREGYESPVEQVIEGPTTSGRAAQRSPSRRTKATTSTTRDAVEEHFATLEGKLEEVKK 60
           MASREGYESPVEQV+EGPTT GRAAQRSPSR+ KATTSTTRD VEE FATLEGKLEEV++
Sbjct: 1   MASREGYESPVEQVVEGPTTRGRAAQRSPSRQNKATTSTTRDVVEERFATLEGKLEEVQE 60

Query: 61  KLGKTSELMEELLVDNADVKKATKAMIKGLRDSHDKDIYDLIVEVTNMRKFMEDELHALR 120
           KLG+TSELMEELLVD+A+V K TKAMI+ LRDSH KDI+DLIVEVTNMRKFME+ELHALR
Sbjct: 61  KLGETSELMEELLVDHAEVSKITKAMIEDLRDSHGKDIHDLIVEVTNMRKFMEEELHALR 120

Query: 121 KDVDE------------------------------------------------------- 180
           KDVDE                                                       
Sbjct: 121 KDVDEVRAECLSRHNANETLTDYRPKEKRTNESGGEVSETRKEHVHKARDSHRDSGRHGK 180

Query: 181 ----------------------------------------LHEGEEE-APVPKEAHLGGI 236
                                                   LH+ EEE  P+P+EAHLGGI
Sbjct: 181 ATEAKKGTSFKTPSPCFLCNGPHWARDCPQKKVLSALMAKLHKREEEEVPIPEEAHLGGI 240

BLAST of Chy3G057560 vs. NCBI nr
Match: KAE8646814.1 (hypothetical protein Csa_005402 [Cucumis sativus])

HSP 1 Score: 155 bits (393), Expect = 1.24e-41
Identity = 74/107 (69.16%), Postives = 92/107 (85.98%), Query Frame = 0

Query: 130 EEEAPVPKEAHLGGIQFLSAMKNDSSSKQPKGRGWMYLEAKLNNKAALPMLDTGATSNII 189
           EEE P+P+EAHLGGIQ+L AMK   SSK+P G+G +Y++A LNN+AAL +LDTGATSNII
Sbjct: 119 EEEVPIPEEAHLGGIQYLGAMKVVPSSKEPIGKGLLYVDATLNNQAALALLDTGATSNII 178

Query: 190 DLEEAKRLGLKITRRGDTKLKIISAMPTRNVGWARNVETRVGKWQGE 236
           DLEEAKRLGLKITRR D +LKII+A PTRN GWA NV+ ++G+W+G+
Sbjct: 179 DLEEAKRLGLKITRRDDVELKIINAEPTRNYGWAWNVKVKIGEWKGK 225

BLAST of Chy3G057560 vs. NCBI nr
Match: KAA0035961.1 (uncharacterized protein E6C27_scaffold56G001660 [Cucumis melo var. makuwa] >TYK30442.1 uncharacterized protein E5676_scaffold349G00550 [Cucumis melo var. makuwa])

HSP 1 Score: 134 bits (336), Expect = 1.33e-32
Identity = 65/107 (60.75%), Postives = 86/107 (80.37%), Query Frame = 0

Query: 130 EEEAPVPKEAHLGGIQFLSAMKNDSSSKQPKGRGWMYLEAKLNNKAALPMLDTGATSNII 189
           EEE P+   A LGGI++LSAMK++SS K+P+  G +Y++A  NNKAAL MLD GAT N++
Sbjct: 326 EEEVPIKGTAQLGGIRYLSAMKSESS-KEPQEGGLLYVDATFNNKAALAMLDAGATHNVM 385

Query: 190 DLEEAKRLGLKITRRGDTKLKIISAMPTRNVGWARNVETRVGKWQGE 236
           D EEAKRLGL+ TRR DT++KIISA   +N+GWA++V+TRVG WQG+
Sbjct: 386 DPEEAKRLGLRTTRRSDTEIKIISAKSMKNIGWAQDVKTRVGGWQGK 431

BLAST of Chy3G057560 vs. NCBI nr
Match: TYK04320.1 (uncharacterized protein E5676_scaffold527G00540 [Cucumis melo var. makuwa])

HSP 1 Score: 103 bits (257), Expect = 1.13e-23
Identity = 55/127 (43.31%), Postives = 82/127 (64.57%), Query Frame = 0

Query: 1   MASREGYESPVEQVIEGPTTSGRAAQRSPSRRTKATTSTTRDAVEEHFATLEGKLEEVKK 60
           MAS+EGYESPVEQV+EGPT  G   QRSPS+R K     T+D  + H A LE   E+V+ 
Sbjct: 1   MASQEGYESPVEQVVEGPTIRGLTTQRSPSKRPKTKALATKDTTDTHLANLEELFEDVQS 60

Query: 61  KLGKTSELMEELLVDNADVKKATKAMIKGLRDSHDKDIYDLIVEVTNMRKFMEDELHALR 120
            +G+ S+  E L+ +N ++  A K MIK +  S  +D+  L  +V N++KF+E E++ L 
Sbjct: 61  TVGRLSDDYEGLVRENVEISAAAKEMIKEIGRSFCRDLNALSKDVANLKKFVEGEIYELH 120

Query: 121 KDVDELH 127
           K+V+ ++
Sbjct: 121 KEVERIY 127

BLAST of Chy3G057560 vs. NCBI nr
Match: KAA0067893.1 (uncharacterized protein E6C27_scaffold138G00500 [Cucumis melo var. makuwa])

HSP 1 Score: 102 bits (253), Expect = 4.41e-23
Identity = 54/127 (42.52%), Postives = 82/127 (64.57%), Query Frame = 0

Query: 1   MASREGYESPVEQVIEGPTTSGRAAQRSPSRRTKATTSTTRDAVEEHFATLEGKLEEVKK 60
           MAS+EGYESPVEQV+EGPT  G   QRSPS+R K     T+D  + H A LE   E+V+ 
Sbjct: 1   MASQEGYESPVEQVVEGPTIRGLTTQRSPSKRPKTKALATKDTTDTHLANLEELFEDVQS 60

Query: 61  KLGKTSELMEELLVDNADVKKATKAMIKGLRDSHDKDIYDLIVEVTNMRKFMEDELHALR 120
            +G+ S+  E L+ +N ++  A K +IK +  S  +D+  L  +V N++KF+E E++ L 
Sbjct: 61  TVGRLSDDYEGLVRENVEISAAAKEIIKEIGRSFCRDLNALSKDVANLKKFVEGEIYELH 120

Query: 121 KDVDELH 127
           K+V+ ++
Sbjct: 121 KEVERIY 127

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7T2W86.1e-2860.75Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ... [more]
A0A5A7T2W88.1e-1262.30Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ... [more]
A0A5D3BYX02.0e-1843.31Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7VIG65.8e-1842.52Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5A7THC04.6e-1541.18Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1... [more]
Match NameE-valueIdentityDescription
KAE8637433.13.68e-10255.12hypothetical protein CSA_004611, partial [Cucumis sativus][more]
KAE8646814.11.24e-4169.16hypothetical protein Csa_005402 [Cucumis sativus][more]
KAA0035961.11.33e-3260.75uncharacterized protein E6C27_scaffold56G001660 [Cucumis melo var. makuwa] >TYK3... [more]
TYK04320.11.13e-2343.31uncharacterized protein E5676_scaffold527G00540 [Cucumis melo var. makuwa][more]
KAA0067893.14.41e-2342.52uncharacterized protein E6C27_scaffold138G00500 [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 102..129
NoneNo IPR availableCOILSCoilCoilcoord: 41..75
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 14..37
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..43
IPR021109Aspartic peptidase domain superfamilyGENE3D2.40.70.10Acid Proteasescoord: 145..237
e-value: 2.1E-9
score: 39.2
IPR021109Aspartic peptidase domain superfamilySUPERFAMILY50630Acid proteasescoord: 163..228

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Chy3G057560.1Chy3G057560.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006508 proteolysis
molecular_function GO:0008233 peptidase activity