Chy3G057120 (gene) Cucumber (hystrix) v1

Overview
NameChy3G057120
Typegene
OrganismCucumis hystrix (Cucumber (hystrix) v1)
DescriptionUnknown protein
LocationchrH03: 9776254 .. 9776856 (-)
RNA-Seq ExpressionChy3G057120
SyntenyChy3G057120
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGGAACAGAGTCAGAGAGAGCTTGGCTATTTCTGTTATCAGCCTAAAAAAAGGTCACCTGCCATGGCAGATTATACAGAACGTCCTTCTCTCTCTTTCATTGCAATTAATAAAGGAAGAGAAAAACAAATGGCCTTACCAGACTCCGCTCCCTAATTAATATACCTTTCGCTTACCCTAAACCTAACTTCAAATTACTTACCAAAACAAACATCTGCTGCTCCTCCTCCTTCTTCACCGGATTCTCTCCTGGAAACACCGCCTTATGCCGGGGCGCCGTTCACCGGAGCAGAAACAAATCGAAAAGACGTCAAAAATTCATCTCCGATTTTTCTGTGGCTTGTATCGTAATAGAAAGAAGCTTCGTTATTGTCAACTTCTCATCAGTCACTTGGATTTCTTCAGGAATTATTGAGGTGTTTAACAAATCAAATACTAATTGCAGTACAGCCTCGATTTGTGTGGGAAAGGGAAATTTGGTGAAGGTCTTTCACCGGATAATTGAAAGTCGCCGGGAACTACAGGAAGTTAAGCGATTTGTTAACGGCGGTGCAGTAAGGTTCAGAATCCATTGTTTTGGTGCCAAATGTATTAATATGA

mRNA sequence

ATGGTGGAACAGAGTCAGAGAGAGCTTGGCTATTTCTGTTATCAGCCTAAAAAAAGACTCCGCTCCCTAATTAATATACCTTTCGCTTACCCTAAACCTAACTTCAAATTACTTACCAAAACAAACATCTGCTGCTCCTCCTCCTTCTTCACCGGATTCTCTCCTGGAAACACCGCCTTATGCCGGGGCGCCGTTCACCGGAGCAGAAACAAATCGAAAAGACGTCAAAAATTCATCTCCGATTTTTCTGTGGCTTGTATCGTAATAGAAAGAAGCTTCGTTATTGTCAACTTCTCATCAGTCACTTGGATTTCTTCAGGAATTATTGAGGTGTTTAACAAATCAAATACTAATTGCAGTACAGCCTCGATTTGTGTGGGAAAGGGAAATTTGGTGAAGGTCTTTCACCGGATAATTGAAAGTCGCCGGGAACTACAGGAAGTTAAGCGATTTGTTAACGGCGGTGCAGTAAGGTTCAGAATCCATTGTTTTGGTGCCAAATGTATTAATATGA

Coding sequence (CDS)

ATGGTGGAACAGAGTCAGAGAGAGCTTGGCTATTTCTGTTATCAGCCTAAAAAAAGACTCCGCTCCCTAATTAATATACCTTTCGCTTACCCTAAACCTAACTTCAAATTACTTACCAAAACAAACATCTGCTGCTCCTCCTCCTTCTTCACCGGATTCTCTCCTGGAAACACCGCCTTATGCCGGGGCGCCGTTCACCGGAGCAGAAACAAATCGAAAAGACGTCAAAAATTCATCTCCGATTTTTCTGTGGCTTGTATCGTAATAGAAAGAAGCTTCGTTATTGTCAACTTCTCATCAGTCACTTGGATTTCTTCAGGAATTATTGAGGTGTTTAACAAATCAAATACTAATTGCAGTACAGCCTCGATTTGTGTGGGAAAGGGAAATTTGGTGAAGGTCTTTCACCGGATAATTGAAAGTCGCCGGGAACTACAGGAAGTTAAGCGATTTGTTAACGGCGGTGCAGTAAGGTTCAGAATCCATTGTTTTGGTGCCAAATGTATTAATATGA

Protein sequence

MVEQSQRELGYFCYQPKKRLRSLINIPFAYPKPNFKLLTKTNICCSSSFFTGFSPGNTALCRGAVHRSRNKSKRRQKFISDFSVACIVIERSFVIVNFSSVTWISSGIIEVFNKSNTNCSTASICVGKGNLVKVFHRIIESRRELQEVKRFVNGGAVRFRIHCFGAKCINMX
Homology
[Close]
BLAST of Chy3G057120 vs. ExPASy TrEMBL
Match: A0A0A0KDQ4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G367190 PE=4 SV=1)

HSP 1 Score: 308.9 bits (790), Expect = 1.3e-80
Identity = 154/169 (91.12%), Postives = 158/169 (93.49%), Query Frame = 0 

Query: 1   MVEQSQRELGYFCYQPKKRLRSLINIPFAYPKPNFKLLTKTNICCSSSFFTGFSPGNTAL 60
           MVEQSQRELGYFCYQPKKRLRSLINIPFAYPKPNFKLLTKTNICCSSSFFTGFSP NTAL
Sbjct: 1   MVEQSQRELGYFCYQPKKRLRSLINIPFAYPKPNFKLLTKTNICCSSSFFTGFSPRNTAL 60

Query: 61  CRGAVHRSRNKSKRRQKFISDFSVACIVIERSFVIVNFSSVTWISSGIIEVFNKSNTNCS 120
           CR A HRSRNKSK+RQ  ISD  V CIVIERSFVIV FSSVTWISSGI+E+FNKSNTNCS
Sbjct: 61  CRVADHRSRNKSKKRQILISDLYVTCIVIERSFVIVKFSSVTWISSGIVELFNKSNTNCS 120

Query: 121 TASICVGKGNLVKVFHRIIESRRELQEVKRFVNGGAVRFRIHCFGAKCI 170
           TA ICVGKGNLVKVFHRIIESRRELQEV+RFVNGGAVRFRIH FGAKCI
Sbjct: 121 TAWICVGKGNLVKVFHRIIESRRELQEVERFVNGGAVRFRIHGFGAKCI 169

[Close]
BLAST of Chy3G057120 vs. NCBI nr
Match: KGN47673.1 (hypothetical protein Csa_018254 [Cucumis sativus])

HSP 1 Score: 310 bits (793), Expect = 1.01e-105
Identity = 154/169 (91.12%), Postives = 158/169 (93.49%), Query Frame = 0 

Query: 1   MVEQSQRELGYFCYQPKKRLRSLINIPFAYPKPNFKLLTKTNICCSSSFFTGFSPGNTAL 60
           MVEQSQRELGYFCYQPKKRLRSLINIPFAYPKPNFKLLTKTNICCSSSFFTGFSP NTAL
Sbjct: 1   MVEQSQRELGYFCYQPKKRLRSLINIPFAYPKPNFKLLTKTNICCSSSFFTGFSPRNTAL 60

Query: 61  CRGAVHRSRNKSKRRQKFISDFSVACIVIERSFVIVNFSSVTWISSGIIEVFNKSNTNCS 120
           CR A HRSRNKSK+RQ  ISD  V CIVIERSFVIV FSSVTWISSGI+E+FNKSNTNCS
Sbjct: 61  CRVADHRSRNKSKKRQILISDLYVTCIVIERSFVIVKFSSVTWISSGIVELFNKSNTNCS 120

Query: 121 TASICVGKGNLVKVFHRIIESRRELQEVKRFVNGGAVRFRIHCFGAKCI 169
           TA ICVGKGNLVKVFHRIIESRRELQEV+RFVNGGAVRFRIH FGAKCI
Sbjct: 121 TAWICVGKGNLVKVFHRIIESRRELQEVERFVNGGAVRFRIHGFGAKCI 169

The following BLAST results are available for this feature:
BLAST of Chy3G057120 vs.
Match NameE-valueIdentityDescription
BLAST of Chy3G057120 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KDQ41.3e-8091.12Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G367190 PE=4 SV=1[more]
BLAST of Chy3G057120 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN47673.11.01e-10591.12hypothetical protein Csa_018254 [Cucumis sativus][more]
BLAST of Chy3G057120 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Chy3G057120.1Chy3G057120.1mRNA