Chy3G056460 (gene) Cucumber (hystrix) v1

Overview
NameChy3G056460
Typegene
OrganismCucumis hystrix (Cucumber (hystrix) v1)
DescriptionPGG domain-containing protein
LocationchrH03: 9266369 .. 9267054 (+)
RNA-Seq ExpressionChy3G056460
SyntenyChy3G056460
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCAAAAGCAGGGGCAAATAATGAAGAGGCAACAGAAGTATCTATAGATACTGAAAGTGAAAATAGCAATGATAGAGAAGAGAAGAACGGTGGTTGGATGAGACCAGGAGATGTGGATTTTGTAATGGTAAGCCCTTCAATTTCTCTGCTCTTTTTGTTTCTCCCTCTGGCCTCTATCCGTTATTAGTGGTTGGATGGAACTTTCATTACTATTTCATTTTCTTTTGCTCACCTTATTATTTGTCAATTTCACGACAGGTTGTCGTAACGTTCATCGCAGCCGTGGCATTCCAAGTAGGAATAAACCCACCGGGCAGTGTATGGCAGGAGGACAAGAATGGCTTTACTGCAGGTAAATCAATAATGGCATCAAAATCACCTTCTGAATACAAGAAATTCATGGCGGGAGTGACAATATGTCTTGGATTTTCATTGATCCAGTTATGTGTGATGTTATTCAGATGGTATCTCAAAAGTTATTCAGTTAGGAGATTGATTATGTACATACTGATGCTATTTACAATAGCCCCAATGATTGTTTCGTTTTGGGCCTCTGTTAAAGCTTTGACACCTGATGAAAAACTAATGTCTGAGATCACTGCTACCATATGGTCTACTTTGGGAGTCTATCTTATAAGCCTCCCACTTATTCTCATTTACTACTTAGCCAAGAAATTCTTGTGA

mRNA sequence

ATGTCAAAAGCAGGGGCAAATAATGAAGAGGCAACAGAAGTATCTATAGATACTGAAAGTGAAAATAGCAATGATAGAGAAGAGAAGAACGGTGGTTGGATGAGACCAGGAGATGTGGATTTTGTAATGGTTGTCGTAACGTTCATCGCAGCCGTGGCATTCCAAGTAGGAATAAACCCACCGGGCAGTGTATGGCAGGAGGACAAGAATGGCTTTACTGCAGGTAAATCAATAATGGCATCAAAATCACCTTCTGAATACAAGAAATTCATGGCGGGAGTGACAATATGTCTTGGATTTTCATTGATCCAGTTATGTGTGATGTTATTCAGATGGTATCTCAAAAGTTATTCAGTTAGGAGATTGATTATGTACATACTGATGCTATTTACAATAGCCCCAATGATTGTTTCGTTTTGGGCCTCTGTTAAAGCTTTGACACCTGATGAAAAACTAATGTCTGAGATCACTGCTACCATATGGTCTACTTTGGGAGTCTATCTTATAAGCCTCCCACTTATTCTCATTTACTACTTAGCCAAGAAATTCTTGTGA

Coding sequence (CDS)

ATGTCAAAAGCAGGGGCAAATAATGAAGAGGCAACAGAAGTATCTATAGATACTGAAAGTGAAAATAGCAATGATAGAGAAGAGAAGAACGGTGGTTGGATGAGACCAGGAGATGTGGATTTTGTAATGGTTGTCGTAACGTTCATCGCAGCCGTGGCATTCCAAGTAGGAATAAACCCACCGGGCAGTGTATGGCAGGAGGACAAGAATGGCTTTACTGCAGGTAAATCAATAATGGCATCAAAATCACCTTCTGAATACAAGAAATTCATGGCGGGAGTGACAATATGTCTTGGATTTTCATTGATCCAGTTATGTGTGATGTTATTCAGATGGTATCTCAAAAGTTATTCAGTTAGGAGATTGATTATGTACATACTGATGCTATTTACAATAGCCCCAATGATTGTTTCGTTTTGGGCCTCTGTTAAAGCTTTGACACCTGATGAAAAACTAATGTCTGAGATCACTGCTACCATATGGTCTACTTTGGGAGTCTATCTTATAAGCCTCCCACTTATTCTCATTTACTACTTAGCCAAGAAATTCTTGTGA

Protein sequence

MSKAGANNEEATEVSIDTESENSNDREEKNGGWMRPGDVDFVMVVVTFIAAVAFQVGINPPGSVWQEDKNGFTAGKSIMASKSPSEYKKFMAGVTICLGFSLIQLCVMLFRWYLKSYSVRRLIMYILMLFTIAPMIVSFWASVKALTPDEKLMSEITATIWSTLGVYLISLPLILIYYLAKKFL*
Homology
BLAST of Chy3G056460 vs. ExPASy TrEMBL
Match: A0A0A0KIL3 (PGG domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G363520 PE=4 SV=1)

HSP 1 Score: 325.1 bits (832), Expect = 1.9e-85
Identity = 169/184 (91.85%), Postives = 174/184 (94.57%), Query Frame = 0

Query: 1   MSKAGANNEEATEVSIDTESENSNDREEKNGGWMRPGDVDFVMVVVTFIAAVAFQVGINP 60
           MSKAGA NEEAT VSIDT SEN  DREEKN GWM+PGDVDFVMVVVTFIAAVAFQVGINP
Sbjct: 1   MSKAGAKNEEATVVSIDTASENKKDREEKNSGWMKPGDVDFVMVVVTFIAAVAFQVGINP 60

Query: 61  PGSVWQEDKNGFTAGKSIMASKSPSEYKKFMAGVTICLGFSLIQLCVMLFRWYLKSYSVR 120
           PGSVWQEDKNGFTAGKSIMASKSPSEYKKFMAGVT+CLGFSLIQLCVMLFRWYLKSYSVR
Sbjct: 61  PGSVWQEDKNGFTAGKSIMASKSPSEYKKFMAGVTLCLGFSLIQLCVMLFRWYLKSYSVR 120

Query: 121 RLIMYILMLFTIAPMIVSFWASVKALTPDEKLMSEITATIWSTLGVYLISLPLILIYYLA 180
           R+IMYILML TIAPMIVSFWASVKALTPDEKLMSEITATIWS LGVYLISLP+IL+YYL 
Sbjct: 121 RMIMYILMLCTIAPMIVSFWASVKALTPDEKLMSEITATIWSILGVYLISLPIILLYYLV 180

Query: 181 KKFL 185
           K FL
Sbjct: 181 KTFL 184

BLAST of Chy3G056460 vs. ExPASy TrEMBL
Match: A0A1S3BCY4 (uncharacterized protein LOC103488512 OS=Cucumis melo OX=3656 GN=LOC103488512 PE=4 SV=1)

HSP 1 Score: 307.8 bits (787), Expect = 3.2e-80
Identity = 158/184 (85.87%), Postives = 170/184 (92.39%), Query Frame = 0

Query: 1   MSKAGANNEEATEVSIDTESENSNDREEKNGGWMRPGDVDFVMVVVTFIAAVAFQVGINP 60
           MSKAGA NEEAT V+IDTE+EN  D EE N GWMRPGDVDFVM+VVTFIAAVAFQVG NP
Sbjct: 1   MSKAGAKNEEATVVAIDTETENRKDGEEMNSGWMRPGDVDFVMIVVTFIAAVAFQVGTNP 60

Query: 61  PGSVWQEDKNGFTAGKSIMASKSPSEYKKFMAGVTICLGFSLIQLCVMLFRWYLKSYSVR 120
           PGSVWQEDKNGFTAGKSIMASKSPSEYKKFMAGVT+CL FSLIQL VMLFRWYLK+YSVR
Sbjct: 61  PGSVWQEDKNGFTAGKSIMASKSPSEYKKFMAGVTLCLSFSLIQLSVMLFRWYLKTYSVR 120

Query: 121 RLIMYILMLFTIAPMIVSFWASVKALTPDEKLMSEITATIWSTLGVYLISLPLILIYYLA 180
           R+IMY+LM+ TIAPMI SFWASVKALTPDEK+MSEITATIWS+ GVYL+SLPLIL+YYL 
Sbjct: 121 RMIMYLLMICTIAPMIFSFWASVKALTPDEKIMSEITATIWSSFGVYLMSLPLILLYYLL 180

Query: 181 KKFL 185
           KKFL
Sbjct: 181 KKFL 184

BLAST of Chy3G056460 vs. ExPASy TrEMBL
Match: A0A5A7VCJ4 (Ankyrin repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold187G00270 PE=4 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 3.4e-26
Identity = 63/74 (85.14%), Postives = 66/74 (89.19%), Query Frame = 0

Query: 1  MSKAGANNEEATEVSIDTESENSNDREEKNGGWMRPGDVDFVMVVVTFIAAVAFQVGINP 60
          MSKAGA NEEAT V+IDTE+EN  D EE N GWMRPGDVDFVM+VVTFIAAVAFQVG NP
Sbjct: 1  MSKAGAKNEEATVVAIDTETENRKDGEEMNSGWMRPGDVDFVMIVVTFIAAVAFQVGTNP 60

Query: 61 PGSVWQEDKNGFTA 75
          PGSVWQEDKNGFTA
Sbjct: 61 PGSVWQEDKNGFTA 74

BLAST of Chy3G056460 vs. ExPASy TrEMBL
Match: A0A1S4DVA8 (uncharacterized protein LOC107990705 OS=Cucumis melo OX=3656 GN=LOC107990705 PE=4 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 4.6e-23
Identity = 76/181 (41.99%), Postives = 116/181 (64.09%), Query Frame = 0

Query: 9   EEATEVSIDTESE-NSNDREEKNGGWMRPG---DVDFVMVVVTFIAAVAFQVGINPPGSV 68
           E+ + +SI+T+   N  D+E +     + G   D DF+MV  TFIAA+AFQ G NPPG V
Sbjct: 6   EDESVLSIETDQTINEKDKENQKKKKKKEGEGRDRDFLMVATTFIAAMAFQAGTNPPGGV 65

Query: 69  WQEDKN-GFTAGKSIMASKSPSEYKKFMAGVTICLGFSLIQLCVMLFRWYLKSYSVRRLI 128
           WQ+D +  + AGKSIMA+KSPS +  FM+GVT+C   S +Q  V+L +   KS+SV +  
Sbjct: 66  WQDDNSPNYEAGKSIMATKSPSLFISFMSGVTVCFACSAMQFIVLLGKSSEKSWSVSKSF 125

Query: 129 MYILMLFTIAPMIVSFWASVKALTPDEKLMSEITATIWSTLGVYLISLPLILIYYLAKKF 185
           +Y  M   I+ ++V++W+++KALTP E  MS +   + +TL + ++ LP+ +  Y+ KK 
Sbjct: 126 IYFTMGSGISAIVVAYWSAIKALTP-EAQMSHVIVMLKTTLVLSVVVLPISM--YIEKKR 183

BLAST of Chy3G056460 vs. ExPASy TrEMBL
Match: A0A0A0KGU1 (PGG domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G363530 PE=4 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 5.1e-22
Identity = 78/184 (42.39%), Postives = 112/184 (60.87%), Query Frame = 0

Query: 1   MSKAGANNEEATEVSIDTESENSNDREE--KNGGWMRPGDVDFVMVVVTFIAAVAFQVGI 60
           MS+   N  E+  ++IDT  +  +++ +   N  WMR  D DF+MVV TFIA VAFQ+G 
Sbjct: 1   MSRQNNNGAESVAITIDTTDDTGHEKNKMMNNNNWMRE-DTDFLMVVTTFIATVAFQIGT 60

Query: 61  NPPGSVWQE-DKNG-FTAGKSIMASKSPSEYKKFMAGVTICLGFSLIQLCVM-LFRWYL- 120
           NPPG VWQE DK G + AGKSIMA+KSPS++  F+  +T C  FS +Q  V+ L +W + 
Sbjct: 61  NPPGGVWQEDDKQGKYFAGKSIMATKSPSDFIGFLVTITACFVFSAMQFAVLFLKKWPVG 120

Query: 121 -KSYSVRRLIMYILMLFTIAPMIVSFWASVKALTPDEKLMSEITATIWSTLGVYLISLPL 178
            K++S  R I+Y  M   ++ M  ++  SV+A TPD +  +    +  + LG + ISL  
Sbjct: 121 AKNWSFSRFILYSTMGLAVSSMGFAYGCSVRAYTPDSEENTLFVISFITMLG-FPISLAA 180

BLAST of Chy3G056460 vs. NCBI nr
Match: XP_004144204.1 (uncharacterized protein LOC101208403 [Cucumis sativus])

HSP 1 Score: 325 bits (834), Expect = 1.51e-111
Identity = 169/184 (91.85%), Postives = 174/184 (94.57%), Query Frame = 0

Query: 1   MSKAGANNEEATEVSIDTESENSNDREEKNGGWMRPGDVDFVMVVVTFIAAVAFQVGINP 60
           MSKAGA NEEAT VSIDT SEN  DREEKN GWM+PGDVDFVMVVVTFIAAVAFQVGINP
Sbjct: 1   MSKAGAKNEEATVVSIDTASENKKDREEKNSGWMKPGDVDFVMVVVTFIAAVAFQVGINP 60

Query: 61  PGSVWQEDKNGFTAGKSIMASKSPSEYKKFMAGVTICLGFSLIQLCVMLFRWYLKSYSVR 120
           PGSVWQEDKNGFTAGKSIMASKSPSEYKKFMAGVT+CLGFSLIQLCVMLFRWYLKSYSVR
Sbjct: 61  PGSVWQEDKNGFTAGKSIMASKSPSEYKKFMAGVTLCLGFSLIQLCVMLFRWYLKSYSVR 120

Query: 121 RLIMYILMLFTIAPMIVSFWASVKALTPDEKLMSEITATIWSTLGVYLISLPLILIYYLA 180
           R+IMYILML TIAPMIVSFWASVKALTPDEKLMSEITATIWS LGVYLISLP+IL+YYL 
Sbjct: 121 RMIMYILMLCTIAPMIVSFWASVKALTPDEKLMSEITATIWSILGVYLISLPIILLYYLV 180

Query: 181 KKFL 184
           K FL
Sbjct: 181 KTFL 184

BLAST of Chy3G056460 vs. NCBI nr
Match: KAE8647228.1 (hypothetical protein Csa_018955 [Cucumis sativus])

HSP 1 Score: 322 bits (825), Expect = 1.96e-107
Identity = 167/183 (91.26%), Postives = 173/183 (94.54%), Query Frame = 0

Query: 2   SKAGANNEEATEVSIDTESENSNDREEKNGGWMRPGDVDFVMVVVTFIAAVAFQVGINPP 61
           SK+GA NEEAT VSIDT SEN  DREEKN GWM+PGDVDFVMVVVTFIAAVAFQVGINPP
Sbjct: 188 SKSGAKNEEATVVSIDTASENKKDREEKNSGWMKPGDVDFVMVVVTFIAAVAFQVGINPP 247

Query: 62  GSVWQEDKNGFTAGKSIMASKSPSEYKKFMAGVTICLGFSLIQLCVMLFRWYLKSYSVRR 121
           GSVWQEDKNGFTAGKSIMASKSPSEYKKFMAGVT+CLGFSLIQLCVMLFRWYLKSYSVRR
Sbjct: 248 GSVWQEDKNGFTAGKSIMASKSPSEYKKFMAGVTLCLGFSLIQLCVMLFRWYLKSYSVRR 307

Query: 122 LIMYILMLFTIAPMIVSFWASVKALTPDEKLMSEITATIWSTLGVYLISLPLILIYYLAK 181
           +IMYILML TIAPMIVSFWASVKALTPDEKLMSEITATIWS LGVYLISLP+IL+YYL K
Sbjct: 308 MIMYILMLCTIAPMIVSFWASVKALTPDEKLMSEITATIWSILGVYLISLPIILLYYLVK 367

Query: 182 KFL 184
            FL
Sbjct: 368 TFL 370

BLAST of Chy3G056460 vs. NCBI nr
Match: XP_008445521.1 (PREDICTED: uncharacterized protein LOC103488512 [Cucumis melo])

HSP 1 Score: 308 bits (789), Expect = 1.09e-104
Identity = 158/184 (85.87%), Postives = 170/184 (92.39%), Query Frame = 0

Query: 1   MSKAGANNEEATEVSIDTESENSNDREEKNGGWMRPGDVDFVMVVVTFIAAVAFQVGINP 60
           MSKAGA NEEAT V+IDTE+EN  D EE N GWMRPGDVDFVM+VVTFIAAVAFQVG NP
Sbjct: 1   MSKAGAKNEEATVVAIDTETENRKDGEEMNSGWMRPGDVDFVMIVVTFIAAVAFQVGTNP 60

Query: 61  PGSVWQEDKNGFTAGKSIMASKSPSEYKKFMAGVTICLGFSLIQLCVMLFRWYLKSYSVR 120
           PGSVWQEDKNGFTAGKSIMASKSPSEYKKFMAGVT+CL FSLIQL VMLFRWYLK+YSVR
Sbjct: 61  PGSVWQEDKNGFTAGKSIMASKSPSEYKKFMAGVTLCLSFSLIQLSVMLFRWYLKTYSVR 120

Query: 121 RLIMYILMLFTIAPMIVSFWASVKALTPDEKLMSEITATIWSTLGVYLISLPLILIYYLA 180
           R+IMY+LM+ TIAPMI SFWASVKALTPDEK+MSEITATIWS+ GVYL+SLPLIL+YYL 
Sbjct: 121 RMIMYLLMICTIAPMIFSFWASVKALTPDEKIMSEITATIWSSFGVYLMSLPLILLYYLL 180

Query: 181 KKFL 184
           KKFL
Sbjct: 181 KKFL 184

BLAST of Chy3G056460 vs. NCBI nr
Match: XP_038884181.1 (uncharacterized protein LOC120075089 [Benincasa hispida])

HSP 1 Score: 224 bits (571), Expect = 1.86e-71
Identity = 125/187 (66.84%), Postives = 147/187 (78.61%), Query Frame = 0

Query: 1   MSKAGAN-NEEATEVSIDTESENSNDREEKNGGWMRPGDVDFVMVVVTFIAAVAFQVGIN 60
           M+KAGA  +EEAT VSIDTE E+  DREE N GW+   DVDFVMV+VTFIA VAFQ G N
Sbjct: 1   MAKAGAKKDEEATAVSIDTERESRKDREEANQGWIER-DVDFVMVIVTFIATVAFQAGTN 60

Query: 61  PPGSVWQEDK--NG--FTAGKSIMASKSPSEYKKFMAGVTICLGFSLIQLCVMLFRWYLK 120
           PPG VWQEDK  NG  + AGKSIM +KSPSEY KFM GVT+CL FS+IQL VMLF WYLK
Sbjct: 61  PPGGVWQEDKKVNGTDYIAGKSIMGTKSPSEYIKFMVGVTVCLAFSVIQLIVMLFNWYLK 120

Query: 121 SYSVRRLIMYILMLFTIAPMIVSFWASVKALTPDEKLMSEITATIWSTLGVYLISLPLIL 180
           S+S+RR I+Y+LML TI PM+V+FW+S+ ALTP + LM+EI A  WS +GV LI LP +L
Sbjct: 121 SWSIRRAILYMLMLLTITPMVVAFWSSLLALTPAD-LMTEIKAGFWSVIGVSLIVLPFVL 180

Query: 181 IYYLAKK 182
           +YYL KK
Sbjct: 181 LYYLTKK 185

BLAST of Chy3G056460 vs. NCBI nr
Match: KAA0064717.1 (ankyrin repeat-containing protein [Cucumis melo var. makuwa] >TYK00737.1 ankyrin repeat-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 128 bits (322), Expect = 4.80e-35
Identity = 63/74 (85.14%), Postives = 66/74 (89.19%), Query Frame = 0

Query: 1  MSKAGANNEEATEVSIDTESENSNDREEKNGGWMRPGDVDFVMVVVTFIAAVAFQVGINP 60
          MSKAGA NEEAT V+IDTE+EN  D EE N GWMRPGDVDFVM+VVTFIAAVAFQVG NP
Sbjct: 1  MSKAGAKNEEATVVAIDTETENRKDGEEMNSGWMRPGDVDFVMIVVTFIAAVAFQVGTNP 60

Query: 61 PGSVWQEDKNGFTA 74
          PGSVWQEDKNGFTA
Sbjct: 61 PGSVWQEDKNGFTA 74

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KIL31.9e-8591.85PGG domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G363520 PE=4 SV... [more]
A0A1S3BCY43.2e-8085.87uncharacterized protein LOC103488512 OS=Cucumis melo OX=3656 GN=LOC103488512 PE=... [more]
A0A5A7VCJ43.4e-2685.14Ankyrin repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... [more]
A0A1S4DVA84.6e-2341.99uncharacterized protein LOC107990705 OS=Cucumis melo OX=3656 GN=LOC107990705 PE=... [more]
A0A0A0KGU15.1e-2242.39PGG domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G363530 PE=4 SV... [more]
Match NameE-valueIdentityDescription
XP_004144204.11.51e-11191.85uncharacterized protein LOC101208403 [Cucumis sativus][more]
KAE8647228.11.96e-10791.26hypothetical protein Csa_018955 [Cucumis sativus][more]
XP_008445521.11.09e-10485.87PREDICTED: uncharacterized protein LOC103488512 [Cucumis melo][more]
XP_038884181.11.86e-7166.84uncharacterized protein LOC120075089 [Benincasa hispida][more]
KAA0064717.14.80e-3585.14ankyrin repeat-containing protein [Cucumis melo var. makuwa] >TYK00737.1 ankyrin... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR026961PGG domainPFAMPF13962PGGcoord: 40..143
e-value: 5.4E-18
score: 64.9
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..32

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Chy3G056460.1Chy3G056460.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane