Chy3G055140 (gene) Cucumber (hystrix) v1

Overview
NameChy3G055140
Typegene
OrganismCucumis hystrix (Cucumber (hystrix) v1)
Descriptionextensin-like
LocationchrH03: 7504814 .. 7505306 (-)
RNA-Seq ExpressionChy3G055140
SyntenyChy3G055140
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTCAAACTGTGTTATATCAGTCCAACCATAACTTACCCCACCAACCTATCACATGTCTGCCTAAACCTTTGTGCACTTGCTCTTACAGAAAATTATTAAACTATTCTCAACTTGACTCATTGTTAATAAATTGAATTATAGGTCCTCTCCAAGTTCCTTCTTTACATTATCCTTGGAATTTCAAAGAGGAATATGGGGTTTGAAACATTGGCCTCCTATCTTTTCTCCCTTCTCATTGCATATTTCTTTTTAAATCTCCCCTCCAAATTGACTGCACATTACATTCACCAATCTTCATCCACCAACCTTTATGAATACGGACCTCCTCCGCTGCCGCTGTCACCGCCACCTCCGATATGCAGACAAGGCGCACCACCACCAGCCAAGAAACAAAACAAATTGAAGCCGCTGCCATCGTTGTCGCCACCACCACCCAAGTTCAAATGGCCACGAAGATTTACCCCTAAATCACCTCCGCCTCCTTTCTAA

mRNA sequence

ATGGCTCAAACTGTCCTCTCCAAGTTCCTTCTTTACATTATCCTTGGAATTTCAAAGAGGAATATGGGGTTTGAAACATTGGCCTCCTATCTTTTCTCCCTTCTCATTGCATATTTCTTTTTAAATCTCCCCTCCAAATTGACTGCACATTACATTCACCAATCTTCATCCACCAACCTTTATGAATACGGACCTCCTCCGCTGCCGCTGTCACCGCCACCTCCGATATGCAGACAAGGCGCACCACCACCAGCCAAGAAACAAAACAAATTGAAGCCGCTGCCATCGTTGTCGCCACCACCACCCAAGTTCAAATGGCCACGAAGATTTACCCCTAAATCACCTCCGCCTCCTTTCTAA

Coding sequence (CDS)

ATGGCTCAAACTGTCCTCTCCAAGTTCCTTCTTTACATTATCCTTGGAATTTCAAAGAGGAATATGGGGTTTGAAACATTGGCCTCCTATCTTTTCTCCCTTCTCATTGCATATTTCTTTTTAAATCTCCCCTCCAAATTGACTGCACATTACATTCACCAATCTTCATCCACCAACCTTTATGAATACGGACCTCCTCCGCTGCCGCTGTCACCGCCACCTCCGATATGCAGACAAGGCGCACCACCACCAGCCAAGAAACAAAACAAATTGAAGCCGCTGCCATCGTTGTCGCCACCACCACCCAAGTTCAAATGGCCACGAAGATTTACCCCTAAATCACCTCCGCCTCCTTTCTAA

Protein sequence

MAQTVLSKFLLYIILGISKRNMGFETLASYLFSLLIAYFFLNLPSKLTAHYIHQSSSTNLYEYGPPPLPLSPPPPICRQGAPPPAKKQNKLKPLPSLSPPPPKFKWPRRFTPKSPPPPF*
Homology
BLAST of Chy3G055140 vs. ExPASy TrEMBL
Match: A0A0A0KI69 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G336260 PE=4 SV=1)

HSP 1 Score: 191.8 bits (486), Expect = 1.6e-45
Identity = 96/98 (97.96%), Postives = 97/98 (98.98%), Query Frame = 0

Query: 22  MGFETLASYLFSLLIAYFFLNLPSKLTAHYIHQSSSTNLYEYGPPPLPLSPPPPICRQGA 81
           MGFETLASYLFSLLIA+FFLNLPSKLTAHYIHQSSSTNLYEYGPPPLPL PPPPICRQGA
Sbjct: 1   MGFETLASYLFSLLIAFFFLNLPSKLTAHYIHQSSSTNLYEYGPPPLPLLPPPPICRQGA 60

Query: 82  PPPAKKQNKLKPLPSLSPPPPKFKWPRRFTPKSPPPPF 120
           PPPAKKQNKLKPLPSLSPPPPKFKWPRRFTPKSPPPPF
Sbjct: 61  PPPAKKQNKLKPLPSLSPPPPKFKWPRRFTPKSPPPPF 98

BLAST of Chy3G055140 vs. ExPASy TrEMBL
Match: A0A5A7UW72 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold874G00250 PE=4 SV=1)

HSP 1 Score: 178.3 bits (451), Expect = 1.9e-41
Identity = 90/98 (91.84%), Postives = 93/98 (94.90%), Query Frame = 0

Query: 22  MGFETLASYLFSLLIAYFFLNLPSKLTAHYIHQSSSTNLYEYGPPPLPLSPPPPICRQGA 81
           MGFETLASYLFSLLIA+FFLNLP+KLTAHYIH+SSSTNLY YG PPLPL PPPPICRQGA
Sbjct: 1   MGFETLASYLFSLLIAFFFLNLPTKLTAHYIHKSSSTNLYGYGAPPLPLPPPPPICRQGA 60

Query: 82  PPPAKKQNKLKPLPSLSPPPPKFKWPRRFTPKSPPPPF 120
           PPPAKKQNKLK LPSLSPPPP FKWPRRFTPKSPPPPF
Sbjct: 61  PPPAKKQNKLKQLPSLSPPPPMFKWPRRFTPKSPPPPF 98

BLAST of Chy3G055140 vs. ExPASy TrEMBL
Match: A0A5D3E2A1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold63236G00010 PE=4 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 9.4e-17
Identity = 67/140 (47.86%), Postives = 76/140 (54.29%), Query Frame = 0

Query: 22  MGFETLASYLFSLLIAYFFLNLPSKLTAHYIHQSSSTNLYEYGPPPLPL--------SPP 81
           MGF  LASYLF LL A+F LNLPSKLTAHYIH SS T L EY PPPLPL        +PP
Sbjct: 1   MGFVILASYLFFLLTAFFSLNLPSKLTAHYIHPSSPTKLREYKPPPLPLPRLVCSYGAPP 60

Query: 82  PPICR---------------------------QGAPPPAKKQNKLK--PLPSLSP----- 120
           PP  +                           +  PPPAKK++  K  PLP + P     
Sbjct: 61  PPKYKFQPPPSPAKKRHKFRPPPSPAKKRYKFKPPPPPAKKRDNFKSPPLPFMPPLPPSR 120

BLAST of Chy3G055140 vs. ExPASy TrEMBL
Match: A0A6J1JSJ5 (extensin-like OS=Cucurbita maxima OX=3661 GN=LOC111489394 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 5.9e-11
Identity = 56/105 (53.33%), Postives = 63/105 (60.00%), Query Frame = 0

Query: 22  MGFETLAS-YLFSLLIAYFFLNLPSKLTAHYIHQSSSTNLYEYGPPP------LPLSPPP 81
           MG   LAS YLFSLLIA   L+LPSKL A  +H S  TN +EY PPP      LP  PPP
Sbjct: 1   MGSLILASFYLFSLLIALLSLDLPSKLAARSLHPSPCTNPHEYQPPPPFPSEKLPY-PPP 60

Query: 82  PICRQGAPPPAKKQNKLKPLPSLSPPPPKFKWPRRFTPKSPPPPF 120
            +C Q APPP K ++K K  P    PP    W R+FT  SPPPPF
Sbjct: 61  SVCTQLAPPPPKNRHKFKTSPPHRMPP----WQRKFTHTSPPPPF 100

BLAST of Chy3G055140 vs. ExPASy TrEMBL
Match: A0A6J1FFZ9 (extensin-like OS=Cucurbita moschata OX=3662 GN=LOC111445143 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 1.9e-09
Identity = 54/110 (49.09%), Postives = 63/110 (57.27%), Query Frame = 0

Query: 22  MGFETLAS-YLFSLLIAYFFLNLPSKLTAHYIHQSSSTNLYEYGPPPLPLS--------- 81
           MG   L+S YLFSLLIA   L+LPSKL A  +H S  TN ++Y PPP PL          
Sbjct: 1   MGSLILSSFYLFSLLIALLSLDLPSKLAARSLHPSPCTNPHQYQPPPPPLPPFPSKKLPY 60

Query: 82  PPPPICRQGA--PPPAKKQNKLKPLPSLSPPPPKFKWPRRFTPKSPPPPF 120
           PPP +C Q A  PPP K ++K K  P    PP    W R+FT  SPPPPF
Sbjct: 61  PPPSVCTQLAPPPPPPKNRHKFKTSPPHRMPP----WQRKFTHTSPPPPF 106

BLAST of Chy3G055140 vs. NCBI nr
Match: KAA0058957.1 (hypothetical protein E6C27_scaffold98G001420 [Cucumis melo var. makuwa] >TYK10990.1 hypothetical protein E5676_scaffold874G00250 [Cucumis melo var. makuwa])

HSP 1 Score: 175 bits (444), Expect = 1.77e-54
Identity = 90/98 (91.84%), Postives = 93/98 (94.90%), Query Frame = 0

Query: 22  MGFETLASYLFSLLIAYFFLNLPSKLTAHYIHQSSSTNLYEYGPPPLPLSPPPPICRQGA 81
           MGFETLASYLFSLLIA+FFLNLP+KLTAHYIH+SSSTNLY YG PPLPL PPPPICRQGA
Sbjct: 1   MGFETLASYLFSLLIAFFFLNLPTKLTAHYIHKSSSTNLYGYGAPPLPLPPPPPICRQGA 60

Query: 82  PPPAKKQNKLKPLPSLSPPPPKFKWPRRFTPKSPPPPF 119
           PPPAKKQNKLK LPSLSPPPP FKWPRRFTPKSPPPPF
Sbjct: 61  PPPAKKQNKLKQLPSLSPPPPMFKWPRRFTPKSPPPPF 98

BLAST of Chy3G055140 vs. NCBI nr
Match: TYK29731.1 (hypothetical protein E5676_scaffold63236G00010 [Cucumis melo var. makuwa])

HSP 1 Score: 93.6 bits (231), Expect = 1.45e-21
Identity = 67/140 (47.86%), Postives = 76/140 (54.29%), Query Frame = 0

Query: 22  MGFETLASYLFSLLIAYFFLNLPSKLTAHYIHQSSSTNLYEYGPPPLPL--------SPP 81
           MGF  LASYLF LL A+F LNLPSKLTAHYIH SS T L EY PPPLPL        +PP
Sbjct: 1   MGFVILASYLFFLLTAFFSLNLPSKLTAHYIHPSSPTKLREYKPPPLPLPRLVCSYGAPP 60

Query: 82  PPICR---------------------------QGAPPPAKKQNKLK--PLPSLSP----- 119
           PP  +                           +  PPPAKK++  K  PLP + P     
Sbjct: 61  PPKYKFQPPPSPAKKRHKFRPPPSPAKKRYKFKPPPPPAKKRDNFKSPPLPFMPPLPPSR 120

BLAST of Chy3G055140 vs. NCBI nr
Match: XP_022993352.1 (extensin-like [Cucurbita maxima])

HSP 1 Score: 74.7 bits (182), Expect = 1.26e-14
Identity = 56/105 (53.33%), Postives = 63/105 (60.00%), Query Frame = 0

Query: 22  MGFETLAS-YLFSLLIAYFFLNLPSKLTAHYIHQSSSTNLYEYGPPP------LPLSPPP 81
           MG   LAS YLFSLLIA   L+LPSKL A  +H S  TN +EY PPP      LP  PPP
Sbjct: 1   MGSLILASFYLFSLLIALLSLDLPSKLAARSLHPSPCTNPHEYQPPPPFPSEKLPY-PPP 60

Query: 82  PICRQGAPPPAKKQNKLKPLPSLSPPPPKFKWPRRFTPKSPPPPF 119
            +C Q APPP K ++K K  P    PP    W R+FT  SPPPPF
Sbjct: 61  SVCTQLAPPPPKNRHKFKTSPPHRMPP----WQRKFTHTSPPPPF 100

BLAST of Chy3G055140 vs. NCBI nr
Match: XP_023551507.1 (extensin-3-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 72.8 bits (177), Expect = 7.93e-14
Identity = 51/100 (51.00%), Postives = 59/100 (59.00%), Query Frame = 0

Query: 30  YLFSLLIAYFFLNLPSKLTAHYIHQSSSTNLYEYGPPPLPLSP---------PPPICRQG 89
           YLFSLLIA   L+LPSKL A  +H S  TN ++Y PPP PL P         PP +C Q 
Sbjct: 10  YLFSLLIALLSLDLPSKLAAPSLHPSPCTNPHQYQPPPPPLPPFPSKKLPYPPPSVCTQL 69

Query: 90  APPPA-KKQNKLKPLPSLSPPPPKFKWPRRFTPKSPPPPF 119
           APPP  K ++K KP P     P    W R+FT KSPPPPF
Sbjct: 70  APPPPPKNRHKFKPSP-----PHPMPWQRKFTHKSPPPPF 104

BLAST of Chy3G055140 vs. NCBI nr
Match: XP_022939147.1 (extensin-like [Cucurbita moschata])

HSP 1 Score: 69.7 bits (169), Expect = 1.34e-12
Identity = 54/110 (49.09%), Postives = 63/110 (57.27%), Query Frame = 0

Query: 22  MGFETLAS-YLFSLLIAYFFLNLPSKLTAHYIHQSSSTNLYEYGPPPLPLSP-------- 81
           MG   L+S YLFSLLIA   L+LPSKL A  +H S  TN ++Y PPP PL P        
Sbjct: 1   MGSLILSSFYLFSLLIALLSLDLPSKLAARSLHPSPCTNPHQYQPPPPPLPPFPSKKLPY 60

Query: 82  -PPPICRQGAPPPA--KKQNKLKPLPSLSPPPPKFKWPRRFTPKSPPPPF 119
            PP +C Q APPP   K ++K K  P    PP    W R+FT  SPPPPF
Sbjct: 61  PPPSVCTQLAPPPPPPKNRHKFKTSPPHRMPP----WQRKFTHTSPPPPF 106

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KI691.6e-4597.96Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G336260 PE=4 SV=1[more]
A0A5A7UW721.9e-4191.84Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3E2A19.4e-1747.86Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A6J1JSJ55.9e-1153.33extensin-like OS=Cucurbita maxima OX=3661 GN=LOC111489394 PE=4 SV=1[more]
A0A6J1FFZ91.9e-0949.09extensin-like OS=Cucurbita moschata OX=3662 GN=LOC111445143 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
KAA0058957.11.77e-5491.84hypothetical protein E6C27_scaffold98G001420 [Cucumis melo var. makuwa] >TYK1099... [more]
TYK29731.11.45e-2147.86hypothetical protein E5676_scaffold63236G00010 [Cucumis melo var. makuwa][more]
XP_022993352.11.26e-1453.33extensin-like [Cucurbita maxima][more]
XP_023551507.17.93e-1451.00extensin-3-like [Cucurbita pepo subsp. pepo][more]
XP_022939147.11.34e-1249.09extensin-like [Cucurbita moschata][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 65..81
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 63..119
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 94..119

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Chy3G055140.1Chy3G055140.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane