Chy3G055070 (gene) Cucumber (hystrix) v1

Overview


Name	Chy3G055070
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	protein IQ-DOMAIN 32 isoform X1
Location	chrH03: 7336063 .. 7341266 (+)
RNA-Seq Expression	Chy3G055070
Synteny	Chy3G055070

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGGAAGTCTACTTCCTGCTTTAAGATTATCGCGTGCGGTGGTGATTCCAGTGACAAAGATGATATTGATATTCCTGAGGTATGTATGTATCTCATTGGCTCTTACTTTCGAGTTTTTCCTTTTTCATTTGCTTTTCTACTTTTTATTTTCTTTTAAGTTTTCTGCTTTTTTTTTTTAATGTTGAACTAGCGTTTATTACTCCAATTTAGTATTAACTGGAAATGAGCCATGTACTTTCTCGTCGAGTTTACTTCATAAGAAAAGTTTGATTTTTTGTGAATTTGTGTTACTGAATGATCTACTGTGTTTCTTGCTTATTAAAGAAATTGGAATTAAGAGGAGATTTGTTTAGCATTTTATGAGAATGGTGCTGCATTAAAGATTCGATTTTATTGTTAAGTGTCTTCGTGAGATTATGTCTTTCTGTAGTGTTAGAAGAGCTACTATTTCTAAGTTTGGTTCATCTCTTGTTATGAGAGATTGGTTTAAGATATGGAATAAATGTATAGTTTAGTCATTTTTATGCTGCATTTTCGTTTTCGTTATGTGATCTTAATTTGAATTTATCCAGAGTAAGCGTTTGAATGACAAACAAGGGTGGAATTTTCGTAAGAGATCTAAATGGAAACGAGTACTAAGCAACACTGTGATAGCTGAAATCCCTTCTCCTGGAAATAAACACGTGTTTAACCATTGGACAAGAAATCAGTGAGTTTGCACAAATTGTTTCGTGATTCTCTCCAAATCTGCTCCACTGCGCACTGCTGAGGACGGCTGCAAACCATCTTGTTAAGTCTTGTTCATCTTCTGGCTATGAATAATTTCTTATAAAAGAACTGAAAGATCTTCATTTTCCAAAGCTTCTTTGAATTTCATTTGTGTTTCTATAATCTCTTCTTCTGCCGAGTAATGTTGCTTTTCCCTCTTTCAATTTTTATGAATTTTACTATCGTTTCATTTTTATTACCTTTCAATTTTCTCTATTTCACATTGTAATCTTCTCATTTCCATTGTCTGTTGTAATTCTTTACTCTTTTTTATCTGTGTTCTTAATCTTGAATCATTTTCATTATAATTTTTCGGATTTTACGACTCTCTTCCACCTATTAGTAAGGCGTATGGAACTCTGTGTCTTTTGGCGACTACAGCCTTTTAACTTGACTTGTACAATCCTAGGCTTATTACGTTAGTTTATGGACTTGTATTCAAGCATTTTCAGGTATTCACTTCAATCTCCATGGATTGAATTTTTAGTTTTTTTTGTACACTTTTCTGGCTCCTACTTACTTAATCTTGGGGATTTTATTATGCACTTTTGAATGAGGGTTATTCAATTTATAAAAAATTCTCAAGAACATTGGAAATATCTTTAACTTAACTTTTGAGGTCATTTTTGAAGCCTCTTTGTAATTGATGTAGGTTTCTTAATAAATTCCTTTAAGGCTTCTTGGAGGAACTTTTGTCATTGATTGGGTAGTTTTTGTCATTTCCCCCTCCCAATATTTGTGAAATTTGCTTTTAAATTCTTTTTATGTTAAATATTGTTGAACTCTTTTATCAAATGTCAATAAATGAAGTGCATAAGGCAAAAACATCCTAGGAGCATGCAAAAAGATTTACCAAATTTAAAGAAAGAAAATGACTTATTGAGAAAAGTACATTTCTCAATAAATTTGATCTTTTTATTGAAAGAAATATTGAAAGAAATACTTTGTTTTTTTTAGTTGGTTGTTAAATAAATTTGATCTTTTTTTTTTCCATTTCTAAATATTTTATCTTAATGTTTTCCTATGGATTTTATTTAAGTTGTGTATGGAAAGTACACAAATTCCAACTACAAAACTACTAGATATAGGCTTTTGGAACTTCAGCTGATAAACTTAGAGATTATATCTCCCTTTTGCACTATTTTCTTGTGGTTTATCAAAGGTATTTTGTTTTTAGTGTTCTTTTGTTCCTCCATTGATTTAAAATATCTATGGATCGGATAACAAATTTGATACCAACAAAAACAATCTTTTGAAAAATTTGATACCATTATTTTCTTGTGAAGCTTCTTCATGATATTTTGTTGTTGTAGCAATGAAGTATTCTTAATGGTATTTTGTTGTGAGATGATTTTAATGGAACGCATGACAATAGGCAGCCAGGTCAAATTTTACATTATTTGAAATAAATCGTTGGTGTGAGATTGGCTTGTGTTTATTCATTTAATGCTATGTTTATGAAAAATGTAGGGAGTAAGAGAGGTTTTGGCGATCTCGAAGACGATGAGGATGACTTCTTTAGCTCCAAAAAGGTATTTCTACCTTATATTCACCTTATTTTCTAGTTTTTGTTTTGAGGACAACTGATTTACTAGTTTAATCCTCACGAATGGATTTCTTCATTTGAATGAGGTAATTTTTTCACGTGGAGAATGTAAATTAACTCTGTCCTATTTTATTGATGATAAAAAAAAAGGGCATATAAATAGCCTTTTTTTTTGTTTGGTGTATATGGCTGAACTTACAAATAAGAGCAAGTTGAAATCATAATTTTGATAGAAATATATGGATTTTTTGGTACAAAGATGCATTGAGTTTATAATATTTGTCAGATTTTGGAATGTTTGAGGTGAGTTGACTCATATTCTATTGTTTATTTTTCTAAAAGATATTGCTTGAGTGTCAAACGTATATTTAGTGAACTCCATAAAAAAATCTTTTTGTTGTGGATCTTAATCTTCGAGGTACTTATTCTGTTTAATTTTGTTGATTGTTTCGAATATTAGTAATTGTTTGAAAATGTCATGATCTTGAAATATACTTGCTAATCGATTTAGTTTCAAACGTTTTTATCTTTTTTATTTGAATTATATGATAGTGTTTAGAAACATATTTATTTCACATTTTTTTTCAAAGCTGCTTTGTTAAAATTCTAAAGATTAAATGATTGATTTAGATATTGTTTGTAGAATGATTGAAGTCATATCGGGTTGAAAGCTAAGCGATTGGGTAGATAGCCAAGCGATCGTTGAATGTTGAAGACTGCAGACTGAAGACTGAGAAGGCGTTTAGGATTTCTTATTTAAGTCTTGTACTACGATCTTGTTTCATGTATTGTTGTAGAATGTATATATAAACACAATATTAAGATTTCATTTTGTATATACCTATGTAAAACATAAATATTATAGTTTATAAAATAATATTGTCACTATTTGGTGAATTAAAAAAAGGGATAATAATGCAACAAGTTAATAAAAATAAATTTGTAAAAATAGATCCAGAAACAAAACTTAAAACGACATTGTTGGGCTCTTTAATGTCAATTCAAAACCGACAGCAAAGGCCAACCGAGGTTAAAGACCTTAGCTTCAATAACACCATCAAAGATGTTGGTTTTAAAAACGACATTAAAAGGTCTTTAATGTCGTTTCTCAACCGACATTAAAAACCTTTAATAATGCTAGTAAAAATGTCGGTTGCCAACCGACATTAAATGCCTTTAGTGTTGATTTTAAATCTACATTAAAGGCCCGATTTCTTCTAGTAAATTATTTACATAAATTGAAAAAAATAGATATCGATAAACTTCTACCAACATCTATCAATAATAGACTTGATTCAGTTTTCTATTAATAATAGTATCGATGATAAACTTGATTTAGTTGTCTACAAACTTGATTTAGTTGTCTACTAATGATAGTATCAATTATATATGATTCTAATATTAATAGTATAAATGAAAGATTTGATACCATTTCTAAGAAAACTTATATACTTTTATCTGTAGAGATGTTGAAGATTTTGTCATAAGTCATAAATAATCTCGCTCATTTTTCTAAATTAAAAAAAAAAATCATCAGTTGAAAATTCTGAGTTACATTGAAAAAAGTCGAATCATATATATTAATGAAAAAGTCTAACAATTAGTTACATGGAAACTGTTGAAAATTCTTCGTCCGACAAAATTTAATATTTAGCCTTAAAATACGTTTTGAATACACCTCATAAAATAAAGGAAAATTGTATATATGAAAAACATATTTAGAAAAAAACAGTCAAGGACGATATCTTTCTTTTTTTTCAAGACAAGTAATTAATAATCAGAGAGTCATCAAGTAGCTATTAAAAGATTATCAACTTTTAAATTTGCTTCTTTTACAATTTAAAAAATGTAATGACGTGAATCTTATTATCATAATTTTTTCGCTATTTTTGCAAGTGTCCCTAAAACAAAGTCATTTAAATATGATTTAAGACACTTTTTCATTATGCAAAAATGACATATACCGTGAGGAACATTTTTAAAGATAACAAGTAAATTAAAATATTTACAAACTATAGCAAAATGTTTGGATTCTGTCAATGATAGAAACTAATAAACTCTATCAATACCACTGATATAGAAGAATATCAGTGTCTATCACATGTTTGTTATTGATAAAATCTGAAATTTTATTGTAACTTGTAAATATTTTGTTAAATTTGCTATTTTTGACAATTTTTTATATTTTAATCCAATAATGCAAAACCTTAAATTATTTGGGAAGATAGAAAAAATAAAAATAAAAATTCATTTTCTTTAGTGAAATATTGAACAGTCAAATTAAGCATAAGTATATCATGACATTAGTATTAAATTTGAAAATATATAACATCATCTAAAAATATTCAAGGTACACATGCATTATATAATATACAACAAATGCAATCGTTTACTAGTATTATTTACAAAGTATAACACAAGGAATTCCCGATAAATGTATTCAATATTGATTCTTAAATTACATTATACATGATTTTTTTGTTCAAATTTCCACCGCTAAAATAGTCTTCAAATTCCTTAGAATGGAGGCGGTGGCGATTTGGGGACGGGGCACTTCGGCCAAGGATACTTATTTGGCTTTGCATCTTTATTTCTATGTCTGGGAGCTTCGGTGCACTTATCTTTACGTTCACCATTTACACGCCGGAGGGGTTTCGCCGGATACTCCTCCGCCGCTGGCGACGGTGGGAGAGAGCTGTGGTCGTTATGGAACAAGAGTGAGCGTGGCAGTGGGGGAGGGTAAGGAATCCCGTAGCTTGGGGCGGCGGTGGCGGCTATCGACGGTGAGCTCGGAGAGAAGGATGCCATTGCCAACAAAATTGCAAGAAATAGATAAGCCAATGGTGGCGCCATGGGGTGTGGGTTTTTGGTTTTTGGTTTTTGTTTGA

mRNA sequence

ATGGGGAAGTCTACTTCCTGCTTTAAGATTATCGCGTGCGGTGGTGATTCCAGTGACAAAGATGATATTGATATTCCTGAGGGAGTAAGAGAGGTTTTGGCGATCTCGAAGACGATGAGGATGACTTCTTTAGCTCCAAAAAGAATGGAGGCGGTGGCGATTTGGGGACGGGGCACTTCGGCCAAGGATACTTATTTGGCTTTGCATCTTTATTTCTATGTCTGGGAGCTTCGGTGCACTTATCTTTACGTTCACCATTTACACGCCGGAGGGGTTTCGCCGGATACTCCTCCGCCGCTGGCGACGGTGGGAGAGAGCTGTGGTCGTTATGGAACAAGAGTGAGCGTGGCAGTGGGGGAGGGTAAGGAATCCCGTAGCTTGGGGCGGCGGTGGCGGCTATCGACGGTGAGCTCGGAGAGAAGGATGCCATTGCCAACAAAATTGCAAGAAATAGATAAGCCAATGGTGGCGCCATGGGGTGTGGGTTTTTGGTTTTTGGTTTTTGTTTGA

Coding sequence (CDS)

ATGGGGAAGTCTACTTCCTGCTTTAAGATTATCGCGTGCGGTGGTGATTCCAGTGACAAAGATGATATTGATATTCCTGAGGGAGTAAGAGAGGTTTTGGCGATCTCGAAGACGATGAGGATGACTTCTTTAGCTCCAAAAAGAATGGAGGCGGTGGCGATTTGGGGACGGGGCACTTCGGCCAAGGATACTTATTTGGCTTTGCATCTTTATTTCTATGTCTGGGAGCTTCGGTGCACTTATCTTTACGTTCACCATTTACACGCCGGAGGGGTTTCGCCGGATACTCCTCCGCCGCTGGCGACGGTGGGAGAGAGCTGTGGTCGTTATGGAACAAGAGTGAGCGTGGCAGTGGGGGAGGGTAAGGAATCCCGTAGCTTGGGGCGGCGGTGGCGGCTATCGACGGTGAGCTCGGAGAGAAGGATGCCATTGCCAACAAAATTGCAAGAAATAGATAAGCCAATGGTGGCGCCATGGGGTGTGGGTTTTTGGTTTTTGGTTTTTGTTTGA

Protein sequence

MGKSTSCFKIIACGGDSSDKDDIDIPEGVREVLAISKTMRMTSLAPKRMEAVAIWGRGTSAKDTYLALHLYFYVWELRCTYLYVHHLHAGGVSPDTPPPLATVGESCGRYGTRVSVAVGEGKESRSLGRRWRLSTVSSERRMPLPTKLQEIDKPMVAPWGVGFWFLVFV*

Homology

[Close]

BLAST of Chy3G055070 vs. ExPASy TrEMBL
Match: A0A5A7V5A1 (Protein IQ-DOMAIN 32 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G008300 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 3.6e-06
Identity = 28/30 (93.33%), Postives = 28/30 (93.33%), Query Frame = 0


Query: 1  MGKSTSCFKIIACGGDSSDKDDIDIPEGVR 31
          MGKSTSCFKIIACGGDSSDKDDIDIPE  R
Sbjct: 1  MGKSTSCFKIIACGGDSSDKDDIDIPESKR 30

[Close]

BLAST of Chy3G055070 vs. ExPASy TrEMBL
Match: A0A1S3CRG3 (protein IQ-DOMAIN 32 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103503896 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 3.6e-06
Identity = 28/30 (93.33%), Postives = 28/30 (93.33%), Query Frame = 0


Query: 1  MGKSTSCFKIIACGGDSSDKDDIDIPEGVR 31
          MGKSTSCFKIIACGGDSSDKDDIDIPE  R
Sbjct: 1  MGKSTSCFKIIACGGDSSDKDDIDIPESKR 30

[Close]

BLAST of Chy3G055070 vs. ExPASy TrEMBL
Match: A0A0A0LE64 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G866460 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 3.1e-05
Identity = 27/30 (90.00%), Postives = 27/30 (90.00%), Query Frame = 0


Query: 1  MGKSTSCFKIIACGGDSSDKDDIDIPEGVR 31
          MGKSTSCFKIIACGGDSSDKDDIDI E  R
Sbjct: 1  MGKSTSCFKIIACGGDSSDKDDIDISESKR 30

[Close]

BLAST of Chy3G055070 vs. NCBI nr
Match: KAE8637384.1 (hypothetical protein CSA_004477, partial [Cucumis sativus])

HSP 1 Score: 209 bits (532), Expect = 7.64e-67
Identity = 101/112 (90.18%), Postives = 103/112 (91.96%), Query Frame = 0


Query: 49  MEAVAIWGRGTSAKDTYLALHLYFYVWELRCTYLYVHHLHAGGVSPDTPPPLATVGESCG 108
           ME VAIWGRGTSAKD YLALHLYF+  EL CTYLYVHHLHAGG+SPDTPPPLATV ESCG
Sbjct: 1   MEEVAIWGRGTSAKDPYLALHLYFHFLELHCTYLYVHHLHAGGISPDTPPPLATVEESCG 60

Query: 109 RYGTRVSVAVGEGKESRSLGRRWRLSTVSSERRMPLPTKLQEIDKPMVAPWG 160
           RYGTRV VAV EGKESRSLGRRWRLSTVSSERRMPLPTKLQEIDKPMVAPW 
Sbjct: 61  RYGTRVGVAVEEGKESRSLGRRWRLSTVSSERRMPLPTKLQEIDKPMVAPWS 112

[Close]

BLAST of Chy3G055070 vs. NCBI nr
Match: KAA0063263.1 (protein IQ-DOMAIN 32 isoform X1 [Cucumis melo var. makuwa] >TYK31511.1 protein IQ-DOMAIN 32 isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 62.0 bits (149), Expect = 1.28e-07
Identity = 28/30 (93.33%), Postives = 28/30 (93.33%), Query Frame = 0


Query: 1  MGKSTSCFKIIACGGDSSDKDDIDIPEGVR 30
          MGKSTSCFKIIACGGDSSDKDDIDIPE  R
Sbjct: 1  MGKSTSCFKIIACGGDSSDKDDIDIPESKR 30

[Close]

BLAST of Chy3G055070 vs. NCBI nr
Match: XP_008466506.1 (PREDICTED: protein IQ-DOMAIN 32 isoform X1 [Cucumis melo])

HSP 1 Score: 62.0 bits (149), Expect = 1.28e-07
Identity = 28/30 (93.33%), Postives = 28/30 (93.33%), Query Frame = 0


Query: 1  MGKSTSCFKIIACGGDSSDKDDIDIPEGVR 30
          MGKSTSCFKIIACGGDSSDKDDIDIPE  R
Sbjct: 1  MGKSTSCFKIIACGGDSSDKDDIDIPESKR 30

[Close]

BLAST of Chy3G055070 vs. NCBI nr
Match: XP_004147868.1 (protein IQ-DOMAIN 32 [Cucumis sativus] >KGN60013.1 hypothetical protein Csa_002507 [Cucumis sativus])

HSP 1 Score: 58.9 bits (141), Expect = 1.48e-06
Identity = 27/30 (90.00%), Postives = 27/30 (90.00%), Query Frame = 0


Query: 1  MGKSTSCFKIIACGGDSSDKDDIDIPEGVR 30
          MGKSTSCFKIIACGGDSSDKDDIDI E  R
Sbjct: 1  MGKSTSCFKIIACGGDSSDKDDIDISESKR 30

[Close]

BLAST of Chy3G055070 vs. NCBI nr
Match: XP_038898619.1 (protein IQ-DOMAIN 32-like [Benincasa hispida])

HSP 1 Score: 53.5 bits (127), Expect = 1.06e-04
Identity = 26/32 (81.25%), Postives = 27/32 (84.38%), Query Frame = 0


Query: 1  MGKSTSCFKIIACGGDSSDKDDID--IPEGVR 30
          MGKSTSCFKIIACGGDS +KDDID  IPE  R
Sbjct: 1  MGKSTSCFKIIACGGDSREKDDIDNDIPESKR 32

The following BLAST results are available for this feature:

BLAST of Chy3G055070 vs.


Match Name	E-value	Identity	Description

BLAST of Chy3G055070 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7V5A1	3.6e-06	93.33	Protein IQ-DOMAIN 32 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]
A0A1S3CRG3	3.6e-06	93.33	protein IQ-DOMAIN 32 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103503896 PE=4 SV=...	[more]
A0A0A0LE64	3.1e-05	90.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G866460 PE=4 SV=1	[more]

BLAST of Chy3G055070 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8637384.1	7.64e-67	90.18	hypothetical protein CSA_004477, partial [Cucumis sativus]	[more]
KAA0063263.1	1.28e-07	93.33	protein IQ-DOMAIN 32 isoform X1 [Cucumis melo var. makuwa] >TYK31511.1 protein I...	[more]
XP_008466506.1	1.28e-07	93.33	PREDICTED: protein IQ-DOMAIN 32 isoform X1 [Cucumis melo]	[more]
XP_004147868.1	1.48e-06	90.00	protein IQ-DOMAIN 32 [Cucumis sativus] >KGN60013.1 hypothetical protein Csa_0025...	[more]
XP_038898619.1	1.06e-04	81.25	protein IQ-DOMAIN 32-like [Benincasa hispida]	[more]

BLAST of Chy3G055070 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy3G055070.1	Chy3G055070.1	mRNA