Chy3G055070 (gene) Cucumber (hystrix) v1

Overview
NameChy3G055070
Typegene
OrganismCucumis hystrix (Cucumber (hystrix) v1)
Descriptionprotein IQ-DOMAIN 32 isoform X1
LocationchrH03: 7336063 .. 7341266 (+)
RNA-Seq ExpressionChy3G055070
SyntenyChy3G055070
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGGAAGTCTACTTCCTGCTTTAAGATTATCGCGTGCGGTGGTGATTCCAGTGACAAAGATGATATTGATATTCCTGAGGTATGTATGTATCTCATTGGCTCTTACTTTCGAGTTTTTCCTTTTTCATTTGCTTTTCTACTTTTTATTTTCTTTTAAGTTTTCTGCTTTTTTTTTTTAATGTTGAACTAGCGTTTATTACTCCAATTTAGTATTAACTGGAAATGAGCCATGTACTTTCTCGTCGAGTTTACTTCATAAGAAAAGTTTGATTTTTTGTGAATTTGTGTTACTGAATGATCTACTGTGTTTCTTGCTTATTAAAGAAATTGGAATTAAGAGGAGATTTGTTTAGCATTTTATGAGAATGGTGCTGCATTAAAGATTCGATTTTATTGTTAAGTGTCTTCGTGAGATTATGTCTTTCTGTAGTGTTAGAAGAGCTACTATTTCTAAGTTTGGTTCATCTCTTGTTATGAGAGATTGGTTTAAGATATGGAATAAATGTATAGTTTAGTCATTTTTATGCTGCATTTTCGTTTTCGTTATGTGATCTTAATTTGAATTTATCCAGAGTAAGCGTTTGAATGACAAACAAGGGTGGAATTTTCGTAAGAGATCTAAATGGAAACGAGTACTAAGCAACACTGTGATAGCTGAAATCCCTTCTCCTGGAAATAAACACGTGTTTAACCATTGGACAAGAAATCAGTGAGTTTGCACAAATTGTTTCGTGATTCTCTCCAAATCTGCTCCACTGCGCACTGCTGAGGACGGCTGCAAACCATCTTGTTAAGTCTTGTTCATCTTCTGGCTATGAATAATTTCTTATAAAAGAACTGAAAGATCTTCATTTTCCAAAGCTTCTTTGAATTTCATTTGTGTTTCTATAATCTCTTCTTCTGCCGAGTAATGTTGCTTTTCCCTCTTTCAATTTTTATGAATTTTACTATCGTTTCATTTTTATTACCTTTCAATTTTCTCTATTTCACATTGTAATCTTCTCATTTCCATTGTCTGTTGTAATTCTTTACTCTTTTTTATCTGTGTTCTTAATCTTGAATCATTTTCATTATAATTTTTCGGATTTTACGACTCTCTTCCACCTATTAGTAAGGCGTATGGAACTCTGTGTCTTTTGGCGACTACAGCCTTTTAACTTGACTTGTACAATCCTAGGCTTATTACGTTAGTTTATGGACTTGTATTCAAGCATTTTCAGGTATTCACTTCAATCTCCATGGATTGAATTTTTAGTTTTTTTTGTACACTTTTCTGGCTCCTACTTACTTAATCTTGGGGATTTTATTATGCACTTTTGAATGAGGGTTATTCAATTTATAAAAAATTCTCAAGAACATTGGAAATATCTTTAACTTAACTTTTGAGGTCATTTTTGAAGCCTCTTTGTAATTGATGTAGGTTTCTTAATAAATTCCTTTAAGGCTTCTTGGAGGAACTTTTGTCATTGATTGGGTAGTTTTTGTCATTTCCCCCTCCCAATATTTGTGAAATTTGCTTTTAAATTCTTTTTATGTTAAATATTGTTGAACTCTTTTATCAAATGTCAATAAATGAAGTGCATAAGGCAAAAACATCCTAGGAGCATGCAAAAAGATTTACCAAATTTAAAGAAAGAAAATGACTTATTGAGAAAAGTACATTTCTCAATAAATTTGATCTTTTTATTGAAAGAAATATTGAAAGAAATACTTTGTTTTTTTTAGTTGGTTGTTAAATAAATTTGATCTTTTTTTTTTCCATTTCTAAATATTTTATCTTAATGTTTTCCTATGGATTTTATTTAAGTTGTGTATGGAAAGTACACAAATTCCAACTACAAAACTACTAGATATAGGCTTTTGGAACTTCAGCTGATAAACTTAGAGATTATATCTCCCTTTTGCACTATTTTCTTGTGGTTTATCAAAGGTATTTTGTTTTTAGTGTTCTTTTGTTCCTCCATTGATTTAAAATATCTATGGATCGGATAACAAATTTGATACCAACAAAAACAATCTTTTGAAAAATTTGATACCATTATTTTCTTGTGAAGCTTCTTCATGATATTTTGTTGTTGTAGCAATGAAGTATTCTTAATGGTATTTTGTTGTGAGATGATTTTAATGGAACGCATGACAATAGGCAGCCAGGTCAAATTTTACATTATTTGAAATAAATCGTTGGTGTGAGATTGGCTTGTGTTTATTCATTTAATGCTATGTTTATGAAAAATGTAGGGAGTAAGAGAGGTTTTGGCGATCTCGAAGACGATGAGGATGACTTCTTTAGCTCCAAAAAGGTATTTCTACCTTATATTCACCTTATTTTCTAGTTTTTGTTTTGAGGACAACTGATTTACTAGTTTAATCCTCACGAATGGATTTCTTCATTTGAATGAGGTAATTTTTTCACGTGGAGAATGTAAATTAACTCTGTCCTATTTTATTGATGATAAAAAAAAAGGGCATATAAATAGCCTTTTTTTTTGTTTGGTGTATATGGCTGAACTTACAAATAAGAGCAAGTTGAAATCATAATTTTGATAGAAATATATGGATTTTTTGGTACAAAGATGCATTGAGTTTATAATATTTGTCAGATTTTGGAATGTTTGAGGTGAGTTGACTCATATTCTATTGTTTATTTTTCTAAAAGATATTGCTTGAGTGTCAAACGTATATTTAGTGAACTCCATAAAAAAATCTTTTTGTTGTGGATCTTAATCTTCGAGGTACTTATTCTGTTTAATTTTGTTGATTGTTTCGAATATTAGTAATTGTTTGAAAATGTCATGATCTTGAAATATACTTGCTAATCGATTTAGTTTCAAACGTTTTTATCTTTTTTATTTGAATTATATGATAGTGTTTAGAAACATATTTATTTCACATTTTTTTTCAAAGCTGCTTTGTTAAAATTCTAAAGATTAAATGATTGATTTAGATATTGTTTGTAGAATGATTGAAGTCATATCGGGTTGAAAGCTAAGCGATTGGGTAGATAGCCAAGCGATCGTTGAATGTTGAAGACTGCAGACTGAAGACTGAGAAGGCGTTTAGGATTTCTTATTTAAGTCTTGTACTACGATCTTGTTTCATGTATTGTTGTAGAATGTATATATAAACACAATATTAAGATTTCATTTTGTATATACCTATGTAAAACATAAATATTATAGTTTATAAAATAATATTGTCACTATTTGGTGAATTAAAAAAAGGGATAATAATGCAACAAGTTAATAAAAATAAATTTGTAAAAATAGATCCAGAAACAAAACTTAAAACGACATTGTTGGGCTCTTTAATGTCAATTCAAAACCGACAGCAAAGGCCAACCGAGGTTAAAGACCTTAGCTTCAATAACACCATCAAAGATGTTGGTTTTAAAAACGACATTAAAAGGTCTTTAATGTCGTTTCTCAACCGACATTAAAAACCTTTAATAATGCTAGTAAAAATGTCGGTTGCCAACCGACATTAAATGCCTTTAGTGTTGATTTTAAATCTACATTAAAGGCCCGATTTCTTCTAGTAAATTATTTACATAAATTGAAAAAAATAGATATCGATAAACTTCTACCAACATCTATCAATAATAGACTTGATTCAGTTTTCTATTAATAATAGTATCGATGATAAACTTGATTTAGTTGTCTACAAACTTGATTTAGTTGTCTACTAATGATAGTATCAATTATATATGATTCTAATATTAATAGTATAAATGAAAGATTTGATACCATTTCTAAGAAAACTTATATACTTTTATCTGTAGAGATGTTGAAGATTTTGTCATAAGTCATAAATAATCTCGCTCATTTTTCTAAATTAAAAAAAAAAATCATCAGTTGAAAATTCTGAGTTACATTGAAAAAAGTCGAATCATATATATTAATGAAAAAGTCTAACAATTAGTTACATGGAAACTGTTGAAAATTCTTCGTCCGACAAAATTTAATATTTAGCCTTAAAATACGTTTTGAATACACCTCATAAAATAAAGGAAAATTGTATATATGAAAAACATATTTAGAAAAAAACAGTCAAGGACGATATCTTTCTTTTTTTTCAAGACAAGTAATTAATAATCAGAGAGTCATCAAGTAGCTATTAAAAGATTATCAACTTTTAAATTTGCTTCTTTTACAATTTAAAAAATGTAATGACGTGAATCTTATTATCATAATTTTTTCGCTATTTTTGCAAGTGTCCCTAAAACAAAGTCATTTAAATATGATTTAAGACACTTTTTCATTATGCAAAAATGACATATACCGTGAGGAACATTTTTAAAGATAACAAGTAAATTAAAATATTTACAAACTATAGCAAAATGTTTGGATTCTGTCAATGATAGAAACTAATAAACTCTATCAATACCACTGATATAGAAGAATATCAGTGTCTATCACATGTTTGTTATTGATAAAATCTGAAATTTTATTGTAACTTGTAAATATTTTGTTAAATTTGCTATTTTTGACAATTTTTTATATTTTAATCCAATAATGCAAAACCTTAAATTATTTGGGAAGATAGAAAAAATAAAAATAAAAATTCATTTTCTTTAGTGAAATATTGAACAGTCAAATTAAGCATAAGTATATCATGACATTAGTATTAAATTTGAAAATATATAACATCATCTAAAAATATTCAAGGTACACATGCATTATATAATATACAACAAATGCAATCGTTTACTAGTATTATTTACAAAGTATAACACAAGGAATTCCCGATAAATGTATTCAATATTGATTCTTAAATTACATTATACATGATTTTTTTGTTCAAATTTCCACCGCTAAAATAGTCTTCAAATTCCTTAGAATGGAGGCGGTGGCGATTTGGGGACGGGGCACTTCGGCCAAGGATACTTATTTGGCTTTGCATCTTTATTTCTATGTCTGGGAGCTTCGGTGCACTTATCTTTACGTTCACCATTTACACGCCGGAGGGGTTTCGCCGGATACTCCTCCGCCGCTGGCGACGGTGGGAGAGAGCTGTGGTCGTTATGGAACAAGAGTGAGCGTGGCAGTGGGGGAGGGTAAGGAATCCCGTAGCTTGGGGCGGCGGTGGCGGCTATCGACGGTGAGCTCGGAGAGAAGGATGCCATTGCCAACAAAATTGCAAGAAATAGATAAGCCAATGGTGGCGCCATGGGGTGTGGGTTTTTGGTTTTTGGTTTTTGTTTGA

mRNA sequence

ATGGGGAAGTCTACTTCCTGCTTTAAGATTATCGCGTGCGGTGGTGATTCCAGTGACAAAGATGATATTGATATTCCTGAGGGAGTAAGAGAGGTTTTGGCGATCTCGAAGACGATGAGGATGACTTCTTTAGCTCCAAAAAGAATGGAGGCGGTGGCGATTTGGGGACGGGGCACTTCGGCCAAGGATACTTATTTGGCTTTGCATCTTTATTTCTATGTCTGGGAGCTTCGGTGCACTTATCTTTACGTTCACCATTTACACGCCGGAGGGGTTTCGCCGGATACTCCTCCGCCGCTGGCGACGGTGGGAGAGAGCTGTGGTCGTTATGGAACAAGAGTGAGCGTGGCAGTGGGGGAGGGTAAGGAATCCCGTAGCTTGGGGCGGCGGTGGCGGCTATCGACGGTGAGCTCGGAGAGAAGGATGCCATTGCCAACAAAATTGCAAGAAATAGATAAGCCAATGGTGGCGCCATGGGGTGTGGGTTTTTGGTTTTTGGTTTTTGTTTGA

Coding sequence (CDS)

ATGGGGAAGTCTACTTCCTGCTTTAAGATTATCGCGTGCGGTGGTGATTCCAGTGACAAAGATGATATTGATATTCCTGAGGGAGTAAGAGAGGTTTTGGCGATCTCGAAGACGATGAGGATGACTTCTTTAGCTCCAAAAAGAATGGAGGCGGTGGCGATTTGGGGACGGGGCACTTCGGCCAAGGATACTTATTTGGCTTTGCATCTTTATTTCTATGTCTGGGAGCTTCGGTGCACTTATCTTTACGTTCACCATTTACACGCCGGAGGGGTTTCGCCGGATACTCCTCCGCCGCTGGCGACGGTGGGAGAGAGCTGTGGTCGTTATGGAACAAGAGTGAGCGTGGCAGTGGGGGAGGGTAAGGAATCCCGTAGCTTGGGGCGGCGGTGGCGGCTATCGACGGTGAGCTCGGAGAGAAGGATGCCATTGCCAACAAAATTGCAAGAAATAGATAAGCCAATGGTGGCGCCATGGGGTGTGGGTTTTTGGTTTTTGGTTTTTGTTTGA

Protein sequence

MGKSTSCFKIIACGGDSSDKDDIDIPEGVREVLAISKTMRMTSLAPKRMEAVAIWGRGTSAKDTYLALHLYFYVWELRCTYLYVHHLHAGGVSPDTPPPLATVGESCGRYGTRVSVAVGEGKESRSLGRRWRLSTVSSERRMPLPTKLQEIDKPMVAPWGVGFWFLVFV*
Homology
[Close]
BLAST of Chy3G055070 vs. ExPASy TrEMBL
Match: A0A5A7V5A1 (Protein IQ-DOMAIN 32 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G008300 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 3.6e-06
Identity = 28/30 (93.33%), Postives = 28/30 (93.33%), Query Frame = 0 

Query: 1  MGKSTSCFKIIACGGDSSDKDDIDIPEGVR 31
          MGKSTSCFKIIACGGDSSDKDDIDIPE  R
Sbjct: 1  MGKSTSCFKIIACGGDSSDKDDIDIPESKR 30

[Close]
BLAST of Chy3G055070 vs. ExPASy TrEMBL
Match: A0A1S3CRG3 (protein IQ-DOMAIN 32 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103503896 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 3.6e-06
Identity = 28/30 (93.33%), Postives = 28/30 (93.33%), Query Frame = 0 

Query: 1  MGKSTSCFKIIACGGDSSDKDDIDIPEGVR 31
          MGKSTSCFKIIACGGDSSDKDDIDIPE  R
Sbjct: 1  MGKSTSCFKIIACGGDSSDKDDIDIPESKR 30

[Close]
BLAST of Chy3G055070 vs. ExPASy TrEMBL
Match: A0A0A0LE64 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G866460 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 3.1e-05
Identity = 27/30 (90.00%), Postives = 27/30 (90.00%), Query Frame = 0 

Query: 1  MGKSTSCFKIIACGGDSSDKDDIDIPEGVR 31
          MGKSTSCFKIIACGGDSSDKDDIDI E  R
Sbjct: 1  MGKSTSCFKIIACGGDSSDKDDIDISESKR 30

[Close]
BLAST of Chy3G055070 vs. NCBI nr
Match: KAE8637384.1 (hypothetical protein CSA_004477, partial [Cucumis sativus])

HSP 1 Score: 209 bits (532), Expect = 7.64e-67
Identity = 101/112 (90.18%), Postives = 103/112 (91.96%), Query Frame = 0 

Query: 49  MEAVAIWGRGTSAKDTYLALHLYFYVWELRCTYLYVHHLHAGGVSPDTPPPLATVGESCG 108
           ME VAIWGRGTSAKD YLALHLYF+  EL CTYLYVHHLHAGG+SPDTPPPLATV ESCG
Sbjct: 1   MEEVAIWGRGTSAKDPYLALHLYFHFLELHCTYLYVHHLHAGGISPDTPPPLATVEESCG 60

Query: 109 RYGTRVSVAVGEGKESRSLGRRWRLSTVSSERRMPLPTKLQEIDKPMVAPWG 160
           RYGTRV VAV EGKESRSLGRRWRLSTVSSERRMPLPTKLQEIDKPMVAPW 
Sbjct: 61  RYGTRVGVAVEEGKESRSLGRRWRLSTVSSERRMPLPTKLQEIDKPMVAPWS 112

[Close]
BLAST of Chy3G055070 vs. NCBI nr
Match: KAA0063263.1 (protein IQ-DOMAIN 32 isoform X1 [Cucumis melo var. makuwa] >TYK31511.1 protein IQ-DOMAIN 32 isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 62.0 bits (149), Expect = 1.28e-07
Identity = 28/30 (93.33%), Postives = 28/30 (93.33%), Query Frame = 0 

Query: 1  MGKSTSCFKIIACGGDSSDKDDIDIPEGVR 30
          MGKSTSCFKIIACGGDSSDKDDIDIPE  R
Sbjct: 1  MGKSTSCFKIIACGGDSSDKDDIDIPESKR 30

[Close]
BLAST of Chy3G055070 vs. NCBI nr
Match: XP_008466506.1 (PREDICTED: protein IQ-DOMAIN 32 isoform X1 [Cucumis melo])

HSP 1 Score: 62.0 bits (149), Expect = 1.28e-07
Identity = 28/30 (93.33%), Postives = 28/30 (93.33%), Query Frame = 0 

Query: 1  MGKSTSCFKIIACGGDSSDKDDIDIPEGVR 30
          MGKSTSCFKIIACGGDSSDKDDIDIPE  R
Sbjct: 1  MGKSTSCFKIIACGGDSSDKDDIDIPESKR 30

[Close]
BLAST of Chy3G055070 vs. NCBI nr
Match: XP_004147868.1 (protein IQ-DOMAIN 32 [Cucumis sativus] >KGN60013.1 hypothetical protein Csa_002507 [Cucumis sativus])

HSP 1 Score: 58.9 bits (141), Expect = 1.48e-06
Identity = 27/30 (90.00%), Postives = 27/30 (90.00%), Query Frame = 0 

Query: 1  MGKSTSCFKIIACGGDSSDKDDIDIPEGVR 30
          MGKSTSCFKIIACGGDSSDKDDIDI E  R
Sbjct: 1  MGKSTSCFKIIACGGDSSDKDDIDISESKR 30

[Close]
BLAST of Chy3G055070 vs. NCBI nr
Match: XP_038898619.1 (protein IQ-DOMAIN 32-like [Benincasa hispida])

HSP 1 Score: 53.5 bits (127), Expect = 1.06e-04
Identity = 26/32 (81.25%), Postives = 27/32 (84.38%), Query Frame = 0 

Query: 1  MGKSTSCFKIIACGGDSSDKDDID--IPEGVR 30
          MGKSTSCFKIIACGGDS +KDDID  IPE  R
Sbjct: 1  MGKSTSCFKIIACGGDSREKDDIDNDIPESKR 32

The following BLAST results are available for this feature:
BLAST of Chy3G055070 vs.
Match NameE-valueIdentityDescription
BLAST of Chy3G055070 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7V5A13.6e-0693.33Protein IQ-DOMAIN 32 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_... [more]
A0A1S3CRG33.6e-0693.33protein IQ-DOMAIN 32 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103503896 PE=4 SV=... [more]
A0A0A0LE643.1e-0590.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G866460 PE=4 SV=1[more]
BLAST of Chy3G055070 vs. NCBI nr
Match NameE-valueIdentityDescription
KAE8637384.17.64e-6790.18hypothetical protein CSA_004477, partial [Cucumis sativus][more]
KAA0063263.11.28e-0793.33protein IQ-DOMAIN 32 isoform X1 [Cucumis melo var. makuwa] >TYK31511.1 protein I... [more]
XP_008466506.11.28e-0793.33PREDICTED: protein IQ-DOMAIN 32 isoform X1 [Cucumis melo][more]
XP_004147868.11.48e-0690.00protein IQ-DOMAIN 32 [Cucumis sativus] >KGN60013.1 hypothetical protein Csa_0025... [more]
XP_038898619.11.06e-0481.25protein IQ-DOMAIN 32-like [Benincasa hispida][more]
BLAST of Chy3G055070 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Chy3G055070.1Chy3G055070.1mRNA