Chy3G054980 (gene) Cucumber (hystrix) v1

Overview
NameChy3G054980
Typegene
OrganismCucumis hystrix (Cucumber (hystrix) v1)
DescriptionMuDRA-like transposase
LocationchrH03: 7151521 .. 7152399 (+)
RNA-Seq ExpressionChy3G054980
SyntenyChy3G054980
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGAGGGAAAGCAACAAACCCGATTCCCCTAATCCCAACCTTAAATGCTCACATATATCGACTAAGGTCTGCGAGCTAATTCCTTTCACTAGGAATATGTGTCCCTTAGAGTTGGGAGACGATGGAAATGGCTTCGGTGATATTAGCAATGACGAGTTTGATGTGTTTGATATAGACTTGGGAGTAGAACTCGGAGGTGATGATGAGAATCTTGGTCTTCATGGTGTTAGTATGTCTTAGGCAGATGTCCAAGTACATCATGAAGAATTACCACTTAAGGAATGTGTAGTGGAAAGTGACGACGAAGAATTTCCTCCAACAATTGGCAAGAAAAAGTGAAAGTGTGTTGAAAAGTTGTTGGAACGCACCATTTTTGTATCTGTCGAGTCATACCTCGAATACGTACAAGTCGGTTCTTTGTTTTTTAATAAGAAAGATTTGGTGAAGAAACTTGCGGTGTTTGCCATAATGCAAAACTTTTAGTTTCGTGTGCATAGAAACTAAGGGCTACGAAACTGAAAGATTCTGATCTGTTTAAGGTCTCTAAGTATGAAAGGACGCACACATGGAAAAAAGTCCTGAGGAAACAAGACCATAAGCAATCTAAGAGTTGGGTTATAGCCAAAAGAATCCAGTCGAAGTATGAAGATGTTAGTCGTGGTTATAGGCCCAAAGAAATAATTCAGAATTTCCTAAAGGAGTTTGACATTGATCTGTCGTAGGATAGGGCTGAGGGCTCGAGAGGCCACACTTTTGATGGTAAGGGGTTCCCCCAGAGAAATTTACGCTTTATTGGCTCGGTTTGGAGAAGCATTAAAGATTACCAATTCGGGAACTTAATATAATTTGAAGGTTGATCTAGATGGTCATTTTTGG

mRNA sequence

ATGGCGAGGGAAAGCAACAAACCCGATTCCCCTAATCCCAACCTTAAATGCTCACATATATCGACTAAGGTCTGCGAGCTAATTCCTTTCACTAGGAATATGTGTCCCTTAGAGTTGGGAGACGATGGAAATGGCTTCGATGTCCAAGTACATCATGAAGAATTACCACTTAAGGAATGTGTAGTGGAAAGTGACGACGAAGAATTTCCTCCAACAATTGGCAAGAAAAAGTGAAAGTGTGTTGAAAAGTTGTTGGAACGCACCATTTTTTTTCGTGTGCATAGAAACTAAGGGCTACGAAACTGAAAGATTCTGATCTGTTTAAGGTCTCTAAGTATGAAAGGACGCACACATGGAAAAAAGTCCTGAGGAAACAAGACCATAAGCAATCTAAGAGTTGGGTTATAGCCAAAAGAATCCAGTCGAAGTATGAAGATGTTAGTCGTGGTTATAGGCCCAAAGAAATAATTCAGAATTTCCTAAAGGAGTTTGACATTGATCTGTCGTAGGATAGGGCTGAGGGCTCGAGAGGCCACACTTTTGATGGTAAGGGGTTCCCCCAGAGAAATTTACGCTTTATTGGCTCGGTTTGGAGAAGCATTAAAGATTACCAATTCGGGAACTTAATATAATTTGAAGGTTGATCTAGATGGTCATTTTTGG

Coding sequence (CDS)

ATGGCGAGGGAAAGCAACAAACCCGATTCCCCTAATCCCAACCTTAAATGCTCACATATATCGACTAAGGTCTGCGAGCTAATTCCTTTCACTAGGAATATGTGTCCCTTAGAGTTGGGAGACGATGGAAATGGCTTCGATGTCCAAGTACATCATGAAGAATTACCACTTAAGGAATGTGTAGTGGAAAGTGACGACGAAGAATTTCCTCCAACAATTGGCAAGAAAAAGTGAAAGTGTGTTGAAAAGTTGTTGGAACGCACCATTTTTTTTCGTGTGCATAGAAACTAAGGGCTACGAAACTGAAAGATTCTGATCTGTTTAAGGTCTCTAAGTATGAAAGGACGCACACATGGAAAAAAGTCCTGAGGAAACAAGACCATAAGCAATCTAAGAGTTGGGTTATAGCCAAAAGAATCCAGTCGAAGTATGAAGATGTTAGTCGTGGTTATAGGCCCAAAGAAATAATTCAGAATTTCCTAAAGGAGTTTGACATTGATCTGTCGTAGGATAGGGCTGAGGGCTCGAGAGGCCACACTTTTGATGGTAAGGGGTTCCCCCAGAGAAATTTACGCTTTATTGGCTCGGTTTGGAGAAGCATTAAAGATTACCAATTCGGGAACTTAATATAATTTGAAGGTTGATCTAGATGGTCATTTTTGG

Protein sequence

MARESNKPDSPNPNLKCSHISTKVCELIPFTRNMCPLELGDDGNGFDVQVHHEELPLKECVVESDDEEFPPTIGKKK*KCVEKLLERTIFFRVHRN*GLRN*KILICLRSLSMKGRTHGKKS*GNKTISNLRVGL*PKESSRSMKMLVVVIGPKK*FRIS*RSLTLICRRIGLRAREATLLMVRGSPREIYALLARFGEALKITNSGT*YNLKVDLDGHFW
Homology
BLAST of Chy3G054980 vs. ExPASy TrEMBL
Match: A0A0A0K9J4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G057140 PE=4 SV=1)

HSP 1 Score: 165.6 bits (418), Expect = 2.3e-37
Identity = 86/118 (72.88%), Postives = 95/118 (80.51%), Query Frame = 0

Query: 1   MARESNKPDSPNPNLKCSHISTKVCELIPFTRNMCPLELGDDGNGFDVQVHHEELPLKEC 60
           MARESNKPD+PNPNLKCSHI TKVCELI FT NMCPLELGD+ NGFDVQV HEE+PLKE 
Sbjct: 1   MARESNKPDAPNPNLKCSHILTKVCELILFTTNMCPLELGDNENGFDVQVDHEEVPLKEG 60

Query: 61  VVESDDEEFPPTIGKKK*KCVEKLLERTIFFRVHRN*GLRN*KILICLRS-LSMKGRT 118
            VESDDEE PP+IGK+  K V+KLLERTIFFRVHR+   +N  +L C  S  S K RT
Sbjct: 61  AVESDDEEVPPSIGKQMRKRVKKLLERTIFFRVHRS--NKNFYVLRCSNSAYSWKLRT 116

BLAST of Chy3G054980 vs. ExPASy TrEMBL
Match: A0A5A7U446 (MuDRA-like transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold63G001340 PE=4 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 1.6e-14
Identity = 77/255 (30.20%), Postives = 107/255 (41.96%), Query Frame = 0

Query: 1   MARESNKPDSPNPNLKCSHISTKVCELIPFTRNMCPLELGDDGNGF-------------- 60
           M  +S K D P PNL CSH+S +   L P  RN+CPLELG+D  G               
Sbjct: 10  MVSKSKKLDFPTPNLNCSHVSNEDRNLRPLARNVCPLELGNDRGGLGSIDNEEFVDDGGH 69

Query: 61  --------------------DVQVHHE-ELPLKECVVESDDEEFPPTIGKKK*KCVEKLL 120
                               + Q+H+E  +  +  +++SD++E P  I KKK K VEKL+
Sbjct: 70  ESDIEFKGDDDVHGLHMFDSNAQLHYEVNIDNEHEILKSDEDESPHLITKKKQKRVEKLM 129

Query: 121 ERTIFFRVHRN*GLRN*KILICLRSLSMKGRTHGKKS*GNKTISNLRVGL*PKESSRSMK 180
             T+F                 L  + +K                       ++ S   +
Sbjct: 130 GCTVFLLAES-----------YLEDVQLK----------------------YEDVSHCYR 189

Query: 181 MLVVVIGPKK*FRIS*RSLTLICRRIGLRAREATLLMVRGSPREIYALLARFGEALKITN 221
              ++    K F I      L  +R+  RA+E    M RG  +E YALLAR  EALKI N
Sbjct: 190 SKEIIQDFLKEFGID-----LSYKRV-WRAQEVIHSMTRGFLKESYALLARHKEALKIAN 225

BLAST of Chy3G054980 vs. ExPASy TrEMBL
Match: A0A5D3C7U6 (MuDRA-like transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold265G001830 PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 8.3e-11
Identity = 71/243 (29.22%), Postives = 99/243 (40.74%), Query Frame = 0

Query: 1   MARESNKPDSPNPNLKCSHISTKVCELIPFTRNMCPLELGDDGNGF-------------- 60
           M  +S K D P PNL CSH+S +   L P  RN+CPLELG+D  G               
Sbjct: 10  MVSKSKKLDFPTPNLNCSHVSNEDRNLRPLARNVCPLELGNDRGGLGSIDNEEFVDDGGH 69

Query: 61  --------------------DVQVHHE-ELPLKECVVESDDEEFPPTIGKKK*KCVEKLL 120
                               + Q+H+E  +  +  +++SD++E P  I KKK K VEKL+
Sbjct: 70  ESDIEFKGDDDVHGLHMFDSNAQLHYEVNIDNEHEILKSDEDESPHLITKKKQKRVEKLM 129

Query: 121 ERTIFFRVHRN*GLRN*KILICLRSLSMKGRTHGKKS*GNKTISNLRVGL*PKESSRSMK 180
             T+F                 L  + +K                       ++ S   +
Sbjct: 130 GCTVFLLAES-----------YLEDVQLK----------------------YEDVSHCYR 189

Query: 181 MLVVVIGPKK*FRIS*RSLTLICRRIGLRAREATLLMVRGSPREIYALLARFGEALKITN 209
              ++    K F I      L  +R+  RA+E    M RG  +E YALLAR  EALKI N
Sbjct: 190 SKEIIQDFLKEFGID-----LSYKRV-WRAQEVIHSMTRGFLKESYALLARHKEALKIAN 213

BLAST of Chy3G054980 vs. ExPASy TrEMBL
Match: A0A0A0K393 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G206960 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 1.1e-10
Identity = 48/119 (40.34%), Postives = 58/119 (48.74%), Query Frame = 0

Query: 1   MARESNKPDSPNPNLKCSHISTKVCELIPFTRNM-------------------------- 60
           MA E+ KP+SPNPNLKCSH+ST+V EL   T N                           
Sbjct: 1   MASETKKPNSPNPNLKCSHVSTEVHELSLLTANWQCIDNYELVNNFGHDSGIEHRGDDEN 60

Query: 61  ------CPLELGDDGNGFDV----------QVHHEELPLKECVVESDDEEFPPTIGKKK 78
                   +ELG D    D+          QVHHEELPL+E  VESDDE+  P++GKKK
Sbjct: 61  IGLHMDLEVELGGDYKNLDLRGVDMSEADAQVHHEELPLEEGAVESDDEKVLPSVGKKK 119

BLAST of Chy3G054980 vs. ExPASy TrEMBL
Match: A0A5D3E646 (MuDRA-like transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2376G00090 PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 3.1e-10
Identity = 70/220 (31.82%), Postives = 84/220 (38.18%), Query Frame = 0

Query: 1   MARESNKPDSPNPNLKCSHISTKVCELIPFTRNMCPLELGDDGNGFDVQVHHEELPLKEC 60
           MA ES K D  N NLKCSH+S +V  LIP   NMCPL++GD+ +G               
Sbjct: 10  MASESKKLDYTNTNLKCSHVSHEVFNLIPLAMNMCPLKVGDERDG--------------- 69

Query: 61  VVESDDEEFPPTIGKKK*KCVEKLLERTIFFRVHRN*GLRN*KILICLRSLSMKGRTHGK 120
           +    +EEF    G           E  I F V                           
Sbjct: 70  LYSIGNEEFVDDGGH----------ESDIEFEV--------------------------- 129

Query: 121 KS*GNKTISNLRVGL*PKESSRSMKMLVVVIGPKK*FRIS*RSLTLICRRIGLRAREATL 180
                                  M M        K F I       +      RA++A L
Sbjct: 130 -----------------------MMMF-------KEFDID------LSYERAWRAQKAAL 141

Query: 181 LMVRGSPREIYALLARFGEALKITNSGT*YNLKVDLDGHF 221
            MVR S RE Y LLAR+GEALKI N  T YNL+V+ DGHF
Sbjct: 190 SMVRKSLRESYGLLARYGEALKIVNHRTHYNLEVEPDGHF 141

BLAST of Chy3G054980 vs. NCBI nr
Match: KAE8652907.1 (hypothetical protein Csa_022657 [Cucumis sativus])

HSP 1 Score: 168 bits (426), Expect = 3.03e-48
Identity = 106/241 (43.98%), Postives = 133/241 (55.19%), Query Frame = 0

Query: 1   MARESNKPDSPNPNLKCSHISTKVCELIPFTRNMCPLELGDDGNGFDVQVHHEELPLKEC 60
           MARESNKPD+PNPNLKCSHI TKVCELI FT NMCPLELGD+ NGFDVQV HEE+PLKE 
Sbjct: 1   MARESNKPDAPNPNLKCSHILTKVCELILFTTNMCPLELGDNENGFDVQVDHEEVPLKEG 60

Query: 61  VVESDDEEFPPTIGKKK*KCVEKLLERTIFFRVHRN*GLRN*KILIC--------LRSLS 120
            VESDDEE PP+IGK+  K V+KLLERTIFFRVHR+   +N  +L C        LR+  
Sbjct: 61  AVESDDEEVPPSIGKQMRKRVKKLLERTIFFRVHRS--NKNFYVLRCSNSAYSWKLRTTK 120

Query: 121 MKGRTHGKKS*GNKTISNLRVGL*PKESSRSMKMLVVV-------------IGPKK*FRI 180
           +K     K S   +T +  +V    ++  +  K  V+                PK+  + 
Sbjct: 121 LKDFDLFKVSKYERTHTCQKVQ--SRQDHKQAKSWVIAKPIQSKYEDVSRGYMPKEIIQN 180

Query: 181 S*RSLTLICRRIGLRAREATLLMVRGSPREIYALLARFGEALKITNSGT*YNLKVDLDGH 220
             +   +             +    G  +     +      LKI NS T YN +VD +GH
Sbjct: 181 FPKEFDIDLSYDRTEGSRGHIFYGNGVLQRNLLFIGLVWRTLKIANSETQYNFEVDPNGH 237

BLAST of Chy3G054980 vs. NCBI nr
Match: KAA0048219.1 (MuDRA-like transposase [Cucumis melo var. makuwa])

HSP 1 Score: 89.4 bits (220), Expect = 2.91e-17
Identity = 79/255 (30.98%), Postives = 108/255 (42.35%), Query Frame = 0

Query: 1   MARESNKPDSPNPNLKCSHISTKVCELIPFTRNMCPLELGDDGNG--------------- 60
           M  +S K D P PNL CSH+S +   L P  RN+CPLELG+D  G               
Sbjct: 10  MVSKSKKLDFPTPNLNCSHVSNEDRNLRPLARNVCPLELGNDRGGLGSIDNEEFVDDGGH 69

Query: 61  -----------------FD--VQVHHE-ELPLKECVVESDDEEFPPTIGKKK*KCVEKLL 120
                            FD   Q+H+E  +  +  +++SD++E P  I KKK K VEKL+
Sbjct: 70  ESDIEFKGDDDVHGLHMFDSNAQLHYEVNIDNEHEILKSDEDESPHLITKKKQKRVEKLM 129

Query: 121 ERTIFFRVHRN*GLRN*KILICLRSLSMKGRTHGKKS*GNKTISNLRVGL*PKESSRSMK 180
             T+F                 L  + +K                       ++ S   +
Sbjct: 130 GCTVFLLAESY-----------LEDVQLKY----------------------EDVSHCYR 189

Query: 181 MLVVVIGPKK*FRIS*RSLTLICRRIGLRAREATLLMVRGSPREIYALLARFGEALKITN 220
              ++    K F I      L  +R+  RA+E    M RG  +E YALLAR  EALKI N
Sbjct: 190 SKEIIQDFLKEFGID-----LSYKRVW-RAQEVIHSMTRGFLKESYALLARHKEALKIAN 225

BLAST of Chy3G054980 vs. NCBI nr
Match: KAA0051701.1 (MuDRA-like transposase [Cucumis melo var. makuwa] >TYK31607.1 MuDRA-like transposase [Cucumis melo var. makuwa])

HSP 1 Score: 75.1 bits (183), Expect = 4.98e-13
Identity = 70/220 (31.82%), Postives = 84/220 (38.18%), Query Frame = 0

Query: 1   MARESNKPDSPNPNLKCSHISTKVCELIPFTRNMCPLELGDDGNGFDVQVHHEELPLKEC 60
           MA ES K D  N NLKCSH+S +V  LIP   NMCPL++GD+ +G               
Sbjct: 10  MASESKKLDYTNTNLKCSHVSHEVFNLIPLAMNMCPLKVGDERDG--------------- 69

Query: 61  VVESDDEEFPPTIGKKK*KCVEKLLERTIFFRVHRN*GLRN*KILICLRSLSMKGRTHGK 120
           +    +EEF    G           E  I F V                           
Sbjct: 70  LYSIGNEEFVDDGGH----------ESDIEFEV--------------------------- 129

Query: 121 KS*GNKTISNLRVGL*PKESSRSMKMLVVVIGPKK*FRIS*RSLTLICRRIGLRAREATL 180
                                  M M        K F I       +      RA++A L
Sbjct: 130 -----------------------MMMF-------KEFDID------LSYERAWRAQKAAL 141

Query: 181 LMVRGSPREIYALLARFGEALKITNSGT*YNLKVDLDGHF 220
            MVR S RE Y LLAR+GEALKI N  T YNL+V+ DGHF
Sbjct: 190 SMVRKSLRESYGLLARYGEALKIVNHRTHYNLEVEPDGHF 141

BLAST of Chy3G054980 vs. NCBI nr
Match: TYK08037.1 (MuDRA-like transposase [Cucumis melo var. makuwa])

HSP 1 Score: 77.4 bits (189), Expect = 1.05e-12
Identity = 73/243 (30.04%), Postives = 100/243 (41.15%), Query Frame = 0

Query: 1   MARESNKPDSPNPNLKCSHISTKVCELIPFTRNMCPLELGDDGNG--------------- 60
           M  +S K D P PNL CSH+S +   L P  RN+CPLELG+D  G               
Sbjct: 10  MVSKSKKLDFPTPNLNCSHVSNEDRNLRPLARNVCPLELGNDRGGLGSIDNEEFVDDGGH 69

Query: 61  -----------------FD--VQVHHE-ELPLKECVVESDDEEFPPTIGKKK*KCVEKLL 120
                            FD   Q+H+E  +  +  +++SD++E P  I KKK K VEKL+
Sbjct: 70  ESDIEFKGDDDVHGLHMFDSNAQLHYEVNIDNEHEILKSDEDESPHLITKKKQKRVEKLM 129

Query: 121 ERTIFFRVHRN*GLRN*KILICLRSLSMKGRTHGKKS*GNKTISNLRVGL*PKESSRSMK 180
             T+F                 L  + +K                       ++ S   +
Sbjct: 130 GCTVFLLAESY-----------LEDVQLKY----------------------EDVSHCYR 189

Query: 181 MLVVVIGPKK*FRIS*RSLTLICRRIGLRAREATLLMVRGSPREIYALLARFGEALKITN 208
              ++    K F I      L  +R+  RA+E    M RG  +E YALLAR  EALKI N
Sbjct: 190 SKEIIQDFLKEFGID-----LSYKRVW-RAQEVIHSMTRGFLKESYALLARHKEALKIAN 213

BLAST of Chy3G054980 vs. NCBI nr
Match: TYK16337.1 (hypothetical protein E5676_scaffold21G001190 [Cucumis melo var. makuwa])

HSP 1 Score: 65.9 bits (159), Expect = 3.97e-10
Identity = 30/46 (65.22%), Postives = 34/46 (73.91%), Query Frame = 0

Query: 1  MARESNKPDSPNPNLKCSHISTKVCELIPFTRNMCPLELGDDGNGF 46
          MA ES KP SPNPN K SH+S ++ EL P T NMCPLEL D+G GF
Sbjct: 1  MASESKKPHSPNPNPKHSHVSNEIRELSPLTTNMCPLELEDNGYGF 46

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0K9J42.3e-3772.88Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G057140 PE=4 SV=1[more]
A0A5A7U4461.6e-1430.20MuDRA-like transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold6... [more]
A0A5D3C7U68.3e-1129.22MuDRA-like transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2... [more]
A0A0A0K3931.1e-1040.34Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G206960 PE=4 SV=1[more]
A0A5D3E6463.1e-1031.82MuDRA-like transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2... [more]
Match NameE-valueIdentityDescription
KAE8652907.13.03e-4843.98hypothetical protein Csa_022657 [Cucumis sativus][more]
KAA0048219.12.91e-1730.98MuDRA-like transposase [Cucumis melo var. makuwa][more]
KAA0051701.14.98e-1331.82MuDRA-like transposase [Cucumis melo var. makuwa] >TYK31607.1 MuDRA-like transpo... [more]
TYK08037.11.05e-1230.04MuDRA-like transposase [Cucumis melo var. makuwa][more]
TYK16337.13.97e-1065.22hypothetical protein E5676_scaffold21G001190 [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Chy3G054980.1Chy3G054980.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding