Chy3G054300 (gene) Cucumber (hystrix) v1

Overview


Name	Chy3G054300
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	SHSP domain-containing protein
Location	chrH03: 6421243 .. 6421899 (+)
RNA-Seq Expression	Chy3G054300
Synteny	Chy3G054300

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTTCTTCATCTCTTAGGGTTGCACACCCCAAAGCACTTTCAAAGTGATTTTACCATTTTTCCTATTTCTTTCTCCTCAAATTTGCACCTCTTCAACATAACATAACGCATAAAAGAATTCTTCTTGATGTCGAGCCATATCGTGAATCAAGATTGGAGAAACGTAGTAACTCAACCAAATCAACAGTTTTTTCCACATGTATCATGGAAAAAATCAGAAAATGAAAAATGGTCATTTTCCATGGAACTTCCAGGTAAAAATAAGCTACACATATATGTCTGCATTAGATGTTATACAAAAGTTACCCTAGCTTAAGCACACTTTTGAGTCAATTGTAAATTTAAGATGGTACTCAAGTAGGTTACTTCATAATGTCATATATTCAAGTCCGCTCTGCAACTGAAAGTGCGTCGTATGTTAAAATTAATTACAGTTTAATGATTTTGGTTAGGTTTTTCAAAGGATCGACTGCGAATCAACTTGAATACAAGAACAAGAACTATTATAGTTACAGGACAAAAATCAGATGGCTTATTCAATATTACTCGTTTGAATGAACGGGTAACAATCAGAGAGGAGTGCTCATTAGAGGAAGTTCAAGCAAAGTTGTCCAATGACATTCTTATTGTCACATTTGAGAAGGAAAAGAAATAA

mRNA sequence

ATGCTTCTTCATCTCTTAGGGTTGCACACCCCAAAGCACTTTCAAAGTGATTTTACCATTTTTCCTATTTCTTTCTCCTCAAATTTGCACCTCTTCAACATAACATAACGCATAAAAGAATTCTTCTTGATGTCGAGCCATATCGTGAATCAAGATTGGAGAAACGTAGTAACTCAACCAAATCAACAGTTTTTTCCACATGTATCATGGAAAAAATCAGAAAATGAAAAATGGTCATTTTCCATGGAACTTCCAGGTTTTTCAAAGGATCGACTGCGAATCAACTTGAATACAAGAACAAGAACTATTATAGTTACAGGACAAAAATCAGATGGCTTATTCAATATTACTCGTTTGAATGAACGGGTAACAATCAGAGAGGAGTGCTCATTAGAGGAAGTTCAAGCAAAGTTGTCCAATGACATTCTTATTGTCACATTTGAGAAGGAAAAGAAATAA

Coding sequence (CDS)

ATGCTTCTTCATCTCTTAGGGTTGCACACCCCAAAGCACTTTCAAAGTGATTTTACCATTTTTCCTATTTCTTTCTCCTCAAATTTGCACCTCTTCAACATAACATAACGCATAAAAGAATTCTTCTTGATGTCGAGCCATATCGTGAATCAAGATTGGAGAAACGTAGTAACTCAACCAAATCAACAGTTTTTTCCACATGTATCATGGAAAAAATCAGAAAATGAAAAATGGTCATTTTCCATGGAACTTCCAGGTTTTTCAAAGGATCGACTGCGAATCAACTTGAATACAAGAACAAGAACTATTATAGTTACAGGACAAAAATCAGATGGCTTATTCAATATTACTCGTTTGAATGAACGGGTAACAATCAGAGAGGAGTGCTCATTAGAGGAAGTTCAAGCAAAGTTGTCCAATGACATTCTTATTGTCACATTTGAGAAGGAAAAGAAATAA

Protein sequence

MLLHLLGLHTPKHFQSDFTIFPISFSSNLHLFNIT*RIKEFFLMSSHIVNQDWRNVVTQPNQQFFPHVSWKKSENEKWSFSMELPGFSKDRLRINLNTRTRTIIVTGQKSDGLFNITRLNERVTIREECSLEEVQAKLSNDILIVTFEKEKK*

Homology

[Close]

BLAST of Chy3G054300 vs. ExPASy TrEMBL
Match: A0A0A0KB53 (SHSP domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G046370 PE=3 SV=1)

HSP 1 Score: 181.0 bits (458), Expect = 3.7e-42
Identity = 91/110 (82.73%), Postives = 101/110 (91.82%), Query Frame = 0


Query: 44  MSSHIVNQDWRNVVTQPNQQFFPHVSWKKSENE-KWSFSMELPGFSKDRLRINLNTRTRT 103
           MSS IVNQDWRNVVTQ NQQFFP +++++SE + KWSFSM+LPGFSKDRLRINLNTRTR 
Sbjct: 1   MSSQIVNQDWRNVVTQQNQQFFPSITFEESEEKNKWSFSMKLPGFSKDRLRINLNTRTRI 60

Query: 104 IIVTGQKSDGLFNITRLNERVTIREECSLEEVQAKLSNDILIVTFEKEKK 153
           I+VTGQKSDGLFNITRLNERVTI+E+C LE VQAKLSND LIVTFEKEKK
Sbjct: 61  IVVTGQKSDGLFNITRLNERVTIKEDCLLEGVQAKLSNDTLIVTFEKEKK 110

[Close]

BLAST of Chy3G054300 vs. ExPASy TrEMBL
Match: A0A6J1FGX8 (uncharacterized protein LOC111445297 OS=Cucurbita moschata OX=3662 GN=LOC111445297 PE=3 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 1.0e-20
Identity = 58/108 (53.70%), Postives = 76/108 (70.37%), Query Frame = 0


Query: 44  MSSHIVNQDWRNVVTQPNQQFFPHVSWKKSENEKWSFSMELPGFSKDRLRINLNTRTRTI 103
           MSS IV QDW + VT+ +Q F P   W + E+ +   SM+LPGF K++L+I LN  TRT+
Sbjct: 1   MSSQIVEQDWGD-VTRSDQPFSPDTKWAEEEHSR-ILSMKLPGFPKNQLQITLNAATRTL 60

Query: 104 IVTGQKSDGLFNITRLNERVTIREECSLEEVQAKLSNDILIVTFEKEK 152
            VTGQK DGLFNI RLNER++I + CSL+ V A+L +  L VTF K+K
Sbjct: 61  TVTGQKQDGLFNIIRLNERISIDDTCSLDGVFARLHDQTLFVTFSKKK 106

[Close]

BLAST of Chy3G054300 vs. ExPASy TrEMBL
Match: A0A6J1G164 (proteoglycan 4 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111449725 PE=3 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 1.8e-04
Identity = 29/90 (32.22%), Postives = 51/90 (56.67%), Query Frame = 0


Query: 61  NQQFFPHVSWKKSENEKWSFSMELPGFSKDRLRINLNTRTRTIIVTGQKSDGLFNITRLN 120
           N+ F P+V  +K ENE     +ELP F++  +++ +    RT++VTG +      +  LN
Sbjct: 23  NEPFTPNVV-EKDENEAHILRLELPDFNEQHVKVKVEEGARTVVVTGDRLLATNRLLILN 82

Query: 121 ERVTIREECSLEEVQAKLSNDILIVTFEKE 151
           +   I ++CS+++V  KL    LI+T  K+
Sbjct: 83  KTYPIPQDCSIDKVHHKLEAGFLIITMPKQ 111

[Close]

BLAST of Chy3G054300 vs. ExPASy TrEMBL
Match: A0A6J1G142 (proteoglycan 4 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111449725 PE=3 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 1.8e-04
Identity = 29/90 (32.22%), Postives = 51/90 (56.67%), Query Frame = 0


Query: 61  NQQFFPHVSWKKSENEKWSFSMELPGFSKDRLRINLNTRTRTIIVTGQKSDGLFNITRLN 120
           N+ F P+V  +K ENE     +ELP F++  +++ +    RT++VTG +      +  LN
Sbjct: 23  NEPFTPNVV-EKDENEAHILRLELPDFNEQHVKVKVEEGARTVVVTGDRLLATNRLLILN 82

Query: 121 ERVTIREECSLEEVQAKLSNDILIVTFEKE 151
           +   I ++CS+++V  KL    LI+T  K+
Sbjct: 83  KTYPIPQDCSIDKVHHKLEAGFLIITMPKQ 111

[Close]

BLAST of Chy3G054300 vs. ExPASy TrEMBL
Match: A0A6J0MTF1 (inactive protein RESTRICTED TEV MOVEMENT 2-like OS=Raphanus sativus OX=3726 GN=LOC108846742 PE=3 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 8.9e-04
Identity = 27/89 (30.34%), Postives = 50/89 (56.18%), Query Frame = 0


Query: 62  QQFFPHVSWKKSENEKWSFSMELPGFSKDRLRINLNTRTRTIIVTGQKSDGLFNITRLNE 121
           + F P   W K + E    +++LPGF+K+++++     +R I VTG++  G    +R NE
Sbjct: 17  EDFVPKSEW-KDQPEATVLTIDLPGFTKEQIKVTYVHTSRMIRVTGERLLGDRRWSRFNE 76

Query: 122 RVTIREECSLEEVQAKLSNDILIVTFEKE 151
             T+ + C ++++   L N+ L +T  KE
Sbjct: 77  VFTVPQNCLVDKIHGSLKNNALTITMPKE 104

[Close]

BLAST of Chy3G054300 vs. NCBI nr
Match: KAE8646641.1 (hypothetical protein Csa_005322 [Cucumis sativus])

HSP 1 Score: 241 bits (615), Expect = 3.42e-79
Identity = 125/158 (79.11%), Postives = 136/158 (86.08%), Query Frame = 0


Query: 1   MLLHLLGLHT-----PKHFQSDFTIFPISFSSNLHLFNIT*RIKEFFLMSSHIVNQDWRN 60
           MLLHLLGLHT     PKHFQ+DFTIFP SFSSNLHL      IKEF LMSS IVNQDWRN
Sbjct: 1   MLLHLLGLHTLRANTPKHFQTDFTIFPTSFSSNLHL-----SIKEFLLMSSQIVNQDWRN 60

Query: 61  VVTQPNQQFFPHVSWKKSENE-KWSFSMELPGFSKDRLRINLNTRTRTIIVTGQKSDGLF 120
           VVTQ NQQFFP +++++SE + KWSFSM+LPGFSKDRLRINLNTRTR I+VTGQKSDGLF
Sbjct: 61  VVTQQNQQFFPSITFEESEEKNKWSFSMKLPGFSKDRLRINLNTRTRIIVVTGQKSDGLF 120

Query: 121 NITRLNERVTIREECSLEEVQAKLSNDILIVTFEKEKK 152
           NITRLNERVTI+E+C LE VQAKLSND LIVTFEKEKK
Sbjct: 121 NITRLNERVTIKEDCLLEGVQAKLSNDTLIVTFEKEKK 153

[Close]

BLAST of Chy3G054300 vs. NCBI nr
Match: KAG7016359.1 (hypothetical protein SDJN02_21467 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 116 bits (291), Expect = 1.49e-30
Identity = 60/108 (55.56%), Postives = 77/108 (71.30%), Query Frame = 0


Query: 44  MSSHIVNQDWRNVVTQPNQQFFPHVSWKKSENEKWSFSMELPGFSKDRLRINLNTRTRTI 103
           MSS IV QDWR+V T+ +Q F P   W + E+ +   SM+LPGF K+RL+I LN  TRT+
Sbjct: 1   MSSQIVEQDWRDV-TRSDQPFSPDTKWAEEEHSR-ILSMKLPGFPKNRLQITLNAATRTL 60

Query: 104 IVTGQKSDGLFNITRLNERVTIREECSLEEVQAKLSNDILIVTFEKEK 151
            VTGQK DGLFNI RLNER++I + CSL+ V A+L +  L VTF K+K
Sbjct: 61  TVTGQKQDGLFNIIRLNERISIDDTCSLDGVFARLHDHTLFVTFSKKK 106

[Close]

BLAST of Chy3G054300 vs. NCBI nr
Match: XP_022939359.1 (uncharacterized protein LOC111445297 [Cucurbita moschata])

HSP 1 Score: 112 bits (281), Expect = 4.87e-29
Identity = 58/108 (53.70%), Postives = 76/108 (70.37%), Query Frame = 0


Query: 44  MSSHIVNQDWRNVVTQPNQQFFPHVSWKKSENEKWSFSMELPGFSKDRLRINLNTRTRTI 103
           MSS IV QDW +V T+ +Q F P   W + E+ +   SM+LPGF K++L+I LN  TRT+
Sbjct: 1   MSSQIVEQDWGDV-TRSDQPFSPDTKWAEEEHSR-ILSMKLPGFPKNQLQITLNAATRTL 60

Query: 104 IVTGQKSDGLFNITRLNERVTIREECSLEEVQAKLSNDILIVTFEKEK 151
            VTGQK DGLFNI RLNER++I + CSL+ V A+L +  L VTF K+K
Sbjct: 61  TVTGQKQDGLFNIIRLNERISIDDTCSLDGVFARLHDQTLFVTFSKKK 106

[Close]

BLAST of Chy3G054300 vs. NCBI nr
Match: KAG6578833.1 (Chlorophyll(ide) b reductase NOL, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 72.8 bits (177), Expect = 1.31e-11
Identity = 37/68 (54.41%), Postives = 47/68 (69.12%), Query Frame = 0


Query: 44  MSSHIVNQDWRNVVTQPNQQFFPHVSWKKSENEKWSFSMELPGFSKDRLRINLNTRTRTI 103
           MSS IV QDWR+V T+ +Q F P   W + E+ +   SM+LPGF K+RL+I LN  TRT+
Sbjct: 1   MSSQIVEQDWRDV-TRSDQPFSPDTKWAEEEHSR-ILSMKLPGFPKNRLQITLNAATRTL 60

Query: 104 IVTGQKSD 111
            VTGQK D
Sbjct: 61  TVTGQKQD 66

[Close]

BLAST of Chy3G054300 vs. NCBI nr
Match: KAG6602241.1 (hypothetical protein SDJN03_07474, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 67.8 bits (164), Expect = 2.17e-11
Identity = 37/95 (38.95%), Postives = 58/95 (61.05%), Query Frame = 0


Query: 59  QPNQQFFPHVSWK-KSENEKWSFSM--ELPGFSKDRLRINLNTRTRTIIVTGQKSDGLFN 118
           Q  + + P+V WK + E  K  F M  +  G S+++L+I+++   RTI +   K +G +N
Sbjct: 13  QQKENYRPNVEWKERKETNKDYFEMIIDFSGCSRNQLQISMSRELRTIDIMTTKKEG-YN 72

Query: 119 ITRLNERVTIREECSLEEVQAKLSNDILIVTFEKE 150
           I R+NE + IR ECSL+ V A   N+ LI+TF K+
Sbjct: 73  IARVNETIPIRPECSLDNVYASFVNNDLIITFPKK 106

[Close]

BLAST of Chy3G054300 vs. TAIR 10
Match: AT3G10680.1 (HSP20-like chaperones superfamily protein )

HSP 1 Score: 45.1 bits (105), Expect = 6.1e-05
Identity = 22/84 (26.19%), Postives = 42/84 (50.00%), Query Frame = 0


Query: 64  FFPHVSWKKSENEKWSFSMELPGFSKDRLRINLNTRTRTIIVTGQKSDGLFNITRLNERV 123
           F P   W  S +  + + + LPGF +D++ I  + RTRT+ + GQ+        R +E  
Sbjct: 26  FKPRAQWTNSGSSIFLY-VNLPGFYRDQIEIKKDERTRTVQIQGQRPLSAQTKARFSEAY 85

Query: 124 TIREECSLEEVQAKLSNDILIVTF 148
            + + C + ++    S+ +L + F
Sbjct: 86  RVPDTCDMTKLSTSFSHGLLTIEF 108

The following BLAST results are available for this feature:

BLAST of Chy3G054300 vs.


Match Name	E-value	Identity	Description

BLAST of Chy3G054300 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KB53	3.7e-42	82.73	SHSP domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G046370 PE=3 S...	[more]
A0A6J1FGX8	1.0e-20	53.70	uncharacterized protein LOC111445297 OS=Cucurbita moschata OX=3662 GN=LOC1114452...	[more]
A0A6J1G164	1.8e-04	32.22	proteoglycan 4 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111449725 PE=3 SV=...	[more]
A0A6J1G142	1.8e-04	32.22	proteoglycan 4 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111449725 PE=3 SV=...	[more]
A0A6J0MTF1	8.9e-04	30.34	inactive protein RESTRICTED TEV MOVEMENT 2-like OS=Raphanus sativus OX=3726 GN=L...	[more]

BLAST of Chy3G054300 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8646641.1	3.42e-79	79.11	hypothetical protein Csa_005322 [Cucumis sativus]	[more]
KAG7016359.1	1.49e-30	55.56	hypothetical protein SDJN02_21467 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022939359.1	4.87e-29	53.70	uncharacterized protein LOC111445297 [Cucurbita moschata]	[more]
KAG6578833.1	1.31e-11	54.41	Chlorophyll(ide) b reductase NOL, chloroplastic, partial [Cucurbita argyrosperma...	[more]
KAG6602241.1	2.17e-11	38.95	hypothetical protein SDJN03_07474, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Chy3G054300 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G10680.1	6.1e-05	26.19	HSP20-like chaperones superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008978	HSP20-like chaperone	GENE3D	2.60.40.790		coord: 58..150 e-value: 2.5E-12 score: 48.5
IPR008978	HSP20-like chaperone	SUPERFAMILY	49764	HSP20-like chaperones	coord: 37..150
IPR002068	Alpha crystallin/Hsp20 domain	PFAM	PF00011	HSP20	coord: 71..150 e-value: 1.0E-5 score: 25.6
IPR002068	Alpha crystallin/Hsp20 domain	PROSITE	PS01031	SHSP	coord: 58..151 score: 13.04913
None	No IPR available	CDD	cd06464	ACD_sHsps-like	coord: 73..148 e-value: 3.1808E-6 score: 41.0005

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy3G054300.1	Chy3G054300.1	mRNA