Chy3G054080 (gene) Cucumber (hystrix) v1

Overview


Name	Chy3G054080
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	Ferredoxin
Location	chrH03: 6269442 .. 6270690 (+)
RNA-Seq Expression	Chy3G054080
Synteny	Chy3G054080

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAACTGTTGCTGGTGATTTTGTTTAAGTTGTTCTGTTTTCTTTGCGGGACGACGGTGTGGAAAATGTTTAGGAATTAGGATCTCGTCCGTTTTTTATTTTTATTTCTTTACTGTTACTTCCTTGTGCTGCTCAGATTGTTGTGGATTGAACAATCGATAGACTAGTGTATTCTTTTCATTTGCTCAATTTCGTTATTTCTAAAACTTTGAGGTATCCTTTTTTCTGTTTCCTTTCAACTTTTGTGGTATCGAACTATTGTATGTCTGATTTACTAACCTCGAACGTATTTTTGCATTACTTGTTCATCGGTGCGACCAACTATAACATGCCTTTCTTATTGTGATCATCAAATGAACTAACTTAGTTTTCCGTTAAGAATGAAATGTTATTGAAACTTTCCATGTCTTATTCATCACCTGGAAGACTGGAACTATCTCATACCCTCCAATTGTCTTTTTTCATCAATTGCTGGTGTGAGCGTAGCTGATGAATGTGCAATATCTTGACGCTATGATATGAAATATTATGAATGATATTTAGTAGACAAGATCTTTTATCATCCATTTTTGCTTGAATGTTTTCATTTTAGAATTTTAACTTGTATAAATACGTATGGTTTCCAACTTTGCAGTGAAGTAGATCAGGTTGCCGCATAAATGTGTGATTAAGTAGCTTTGATATTCTGTTGTCTAATAGATTTTTGCAAATTTCTGTCAAATTCTCTATTTTTAGTCCCTTTGAGGACATTCGATAATTCTCTATTTTTATTTTCAGGTATTACTATTCTATTTCGAACATGTCGACTGTCACACTCCCAACATCTTCCCTGATCAAACCTCCTACACTAAGGAGATCCAATGCCCTGGTGCAGAGGCCATCTTCTTTGTGTTCCTTTAGGAGCGTATCCAGATCATTTGGGTTGAAGTCTTCTCAGTTCAAAGTGTCAGCAATGGCTTCTTACAAAGTAAAATTAATTGGACCAGACGGTGAAGAGAATGAGTTCGAGGCCCCTGATGATGCTTACATTCTCGACTCAGCTGAGAATGCTGGATTGGACCTACCGTACTCTTGCAGGGCCGGGGCTTGCTCTACTTGTGCCGGTCAAGTAGTGTCCGGGACAGTGGACCAGACAGATGGATCGTTCTTGGACGACAAGCAGATGGAGAAGGGGTATGTCCTGACCTGCGTCGCATATCCACAATCCGATTGCGTGATCCACACACACAAGGAAGGTGATCTGTACTAA

mRNA sequence

ATGAACTGTTGCTGGTATTACTATTCTATTTCGAACATGTCGACTGTCACACTCCCAACATCTTCCCTGATCAAACCTCCTACACTAAGGAGATCCAATGCCCTGGTGCAGAGGCCATCTTCTTTGTGTTCCTTTAGGAGCGTATCCAGATCATTTGGGTTGAAGTCTTCTCAGTTCAAAGTGTCAGCAATGGCTTCTTACAAAGTAAAATTAATTGGACCAGACGGTGAAGAGAATGAGTTCGAGGCCCCTGATGATGCTTACATTCTCGACTCAGCTGAGAATGCTGGATTGGACCTACCGTACTCTTGCAGGGCCGGGGCTTGCTCTACTTGTGCCGGTCAAGTAGTGTCCGGGACAGTGGACCAGACAGATGGATCGTTCTTGGACGACAAGCAGATGGAGAAGGGGTATGTCCTGACCTGCGTCGCATATCCACAATCCGATTGCGTGATCCACACACACAAGGAAGGTGATCTGTACTAA

Coding sequence (CDS)

ATGAACTGTTGCTGGTATTACTATTCTATTTCGAACATGTCGACTGTCACACTCCCAACATCTTCCCTGATCAAACCTCCTACACTAAGGAGATCCAATGCCCTGGTGCAGAGGCCATCTTCTTTGTGTTCCTTTAGGAGCGTATCCAGATCATTTGGGTTGAAGTCTTCTCAGTTCAAAGTGTCAGCAATGGCTTCTTACAAAGTAAAATTAATTGGACCAGACGGTGAAGAGAATGAGTTCGAGGCCCCTGATGATGCTTACATTCTCGACTCAGCTGAGAATGCTGGATTGGACCTACCGTACTCTTGCAGGGCCGGGGCTTGCTCTACTTGTGCCGGTCAAGTAGTGTCCGGGACAGTGGACCAGACAGATGGATCGTTCTTGGACGACAAGCAGATGGAGAAGGGGTATGTCCTGACCTGCGTCGCATATCCACAATCCGATTGCGTGATCCACACACACAAGGAAGGTGATCTGTACTAA

Protein sequence

MNCCWYYYSISNMSTVTLPTSSLIKPPTLRRSNALVQRPSSLCSFRSVSRSFGLKSSQFKVSAMASYKVKLIGPDGEENEFEAPDDAYILDSAENAGLDLPYSCRAGACSTCAGQVVSGTVDQTDGSFLDDKQMEKGYVLTCVAYPQSDCVIHTHKEGDLY*

Homology

[Close]

BLAST of Chy3G054080 vs. ExPASy Swiss-Prot
Match: P27788 (Ferredoxin-3, chloroplastic OS=Zea mays OX=4577 GN=FDX3 PE=1 SV=1)

HSP 1 Score: 197.2 bits (500), Expect = 1.4e-49
Identity = 100/152 (65.79%), Postives = 121/152 (79.61%), Query Frame = 0


Query: 13  MSTVTLPTSSLI--KPPTLRRSNALVQRPSSLCSFRSVSRSFGLKSS-QFKVSAMASYKV 72
           MST T  TS  +     T + S   V+ PSSL  F  V++   LK+S +  VSAMA YKV
Sbjct: 1   MSTSTFATSCTLLGNVRTTQASQTAVKSPSSLSFFSQVTKVPSLKTSKKLDVSAMAVYKV 60

Query: 73  KLIGPDGEENEFEAPDDAYILDSAENAGLDLPYSCRAGACSTCAGQVVSGTVDQTDGSFL 132
           KL+GP+GEE+EF+APDDAYILD+AE AG++LPYSCRAGACSTCAG++ SG+VDQ+DGSFL
Sbjct: 61  KLVGPEGEEHEFDAPDDAYILDAAETAGVELPYSCRAGACSTCAGKIESGSVDQSDGSFL 120

Query: 133 DDKQMEKGYVLTCVAYPQSDCVIHTHKEGDLY 162
           DD Q E+GYVLTCV+YP+SDCVIHTHKEGDLY
Sbjct: 121 DDGQQEEGYVLTCVSYPKSDCVIHTHKEGDLY 152

[Close]

BLAST of Chy3G054080 vs. ExPASy Swiss-Prot
Match: Q9ZQG8 (Ferredoxin-3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=FD3 PE=1 SV=1)

HSP 1 Score: 185.3 bits (469), Expect = 5.6e-46
Identity = 97/155 (62.58%), Postives = 118/155 (76.13%), Query Frame = 0


Query: 13  MSTVTLPTSSLIKPP-TLRRSNALVQRPS---SLCSFRSVSRSFGLKSSQFKVSAMAS-- 72
           M+TV + ++S+ K     + +N L+   S   S+ S + VSRSFGLK S     A  S  
Sbjct: 1   MATVRISSTSMTKAVLRSQTTNKLITNKSYNLSVGSTKRVSRSFGLKCSANSGGATMSAV 60

Query: 73  YKVKLIGPDGEENEFEAPDDAYILDSAENAGLDLPYSCRAGACSTCAGQVVSGTVDQTDG 132
           YKVKL+GPDG+E+EFE  DD YILD+AE AG+DLPYSCRAGACSTCAGQ+VSG VDQ+DG
Sbjct: 61  YKVKLLGPDGQEDEFEVQDDQYILDAAEEAGVDLPYSCRAGACSTCAGQIVSGNVDQSDG 120

Query: 133 SFLDDKQMEKGYVLTCVAYPQSDCVIHTHKEGDLY 162
           SFL+D  +EKGYVLTCVAYPQSDCVIHTHKE +L+
Sbjct: 121 SFLEDSHLEKGYVLTCVAYPQSDCVIHTHKETELF 155

[Close]

BLAST of Chy3G054080 vs. ExPASy Swiss-Prot
Match: P14937 (Ferredoxin, root R-B2 OS=Raphanus sativus OX=3726 PE=1 SV=1)

HSP 1 Score: 167.9 bits (424), Expect = 9.2e-41
Identity = 75/97 (77.32%), Postives = 86/97 (88.66%), Query Frame = 0


Query: 65  ASYKVKLIGPDGEENEFEAPDDAYILDSAENAGLDLPYSCRAGACSTCAGQVVSGTVDQT 124
           A YKVKLIGP+GEENEFE  DD +ILD+AE AG+DLPYSCRAGACSTCAGQ+V G VDQ+
Sbjct: 2   AVYKVKLIGPEGEENEFEVQDDQFILDAAEEAGVDLPYSCRAGACSTCAGQIVKGQVDQS 61

Query: 125 DGSFLDDKQMEKGYVLTCVAYPQSDCVIHTHKEGDLY 162
           +GSFL+D   EKG+VLTCVAYPQSDCVIHTHKE +L+
Sbjct: 62  EGSFLEDDHFEKGFVLTCVAYPQSDCVIHTHKETELF 98

[Close]

BLAST of Chy3G054080 vs. ExPASy Swiss-Prot
Match: P14936 (Ferredoxin, root R-B1 OS=Raphanus sativus OX=3726 PE=1 SV=1)

HSP 1 Score: 167.2 bits (422), Expect = 1.6e-40
Identity = 75/97 (77.32%), Postives = 85/97 (87.63%), Query Frame = 0


Query: 65  ASYKVKLIGPDGEENEFEAPDDAYILDSAENAGLDLPYSCRAGACSTCAGQVVSGTVDQT 124
           A YKVKLIGPDG+ENEF+ PDD YILD+AE AG+DLPYSCRAGACSTCAG++  G VDQ+
Sbjct: 2   AVYKVKLIGPDGQENEFDVPDDQYILDAAEEAGVDLPYSCRAGACSTCAGKIEKGQVDQS 61

Query: 125 DGSFLDDKQMEKGYVLTCVAYPQSDCVIHTHKEGDLY 162
           DGSFL+D   EKGYVLTCVAYPQSD VIHTHKE +L+
Sbjct: 62  DGSFLEDHHFEKGYVLTCVAYPQSDLVIHTHKEEELF 98

[Close]

BLAST of Chy3G054080 vs. ExPASy Swiss-Prot
Match: P94044 (Ferredoxin-6, chloroplastic OS=Zea mays OX=4577 GN=FDX6 PE=2 SV=1)

HSP 1 Score: 162.5 bits (410), Expect = 3.9e-39
Identity = 76/118 (64.41%), Postives = 100/118 (84.75%), Query Frame = 0


Query: 46  RSVSRSFGLK-SSQFKVSAMA-SYKVKLIGPDGEENEFEAPDDAYILDSAENAGLDLPYS 105
           R  +R+ G + SS+F  SA A  +KVKL+GPDG E+EFEAPDD YIL++AE AG++LP+S
Sbjct: 38  RQAARASGPRLSSRFVASAAAVLHKVKLVGPDGTEHEFEAPDDTYILEAAETAGVELPFS 97

Query: 106 CRAGACSTCAGQVVSGTVDQTDGSFLDDKQMEKGYVLTCVAYPQSDCVIHTHKEGDLY 162
           CRAG+CSTCAG++ +G VDQ++GSFLDD QM +GY+LTC++YP++DCVIHTHKE DLY
Sbjct: 98  CRAGSCSTCAGRMSAGEVDQSEGSFLDDGQMAEGYLLTCISYPKADCVIHTHKEEDLY 155

[Close]

BLAST of Chy3G054080 vs. ExPASy TrEMBL
Match: A0A0A0KNA3 (Ferredoxin OS=Cucumis sativus OX=3659 GN=Csa_5G413260 PE=3 SV=1)

HSP 1 Score: 299.3 bits (765), Expect = 9.8e-78
Identity = 148/149 (99.33%), Postives = 149/149 (100.00%), Query Frame = 0


Query: 13  MSTVTLPTSSLIKPPTLRRSNALVQRPSSLCSFRSVSRSFGLKSSQFKVSAMASYKVKLI 72
           MSTVTLPTSSLIKPPTLRRSNALVQRPSSLCSFRSVSRSFGLKSSQFKVSAMASYKVKLI
Sbjct: 1   MSTVTLPTSSLIKPPTLRRSNALVQRPSSLCSFRSVSRSFGLKSSQFKVSAMASYKVKLI 60

Query: 73  GPDGEENEFEAPDDAYILDSAENAGLDLPYSCRAGACSTCAGQVVSGTVDQTDGSFLDDK 132
           GPDGEENEF+APDDAYILDSAENAGLDLPYSCRAGACSTCAGQVVSGTVDQTDGSFLDDK
Sbjct: 61  GPDGEENEFDAPDDAYILDSAENAGLDLPYSCRAGACSTCAGQVVSGTVDQTDGSFLDDK 120

Query: 133 QMEKGYVLTCVAYPQSDCVIHTHKEGDLY 162
           QMEKGYVLTCVAYPQSDCVIHTHKEGDLY
Sbjct: 121 QMEKGYVLTCVAYPQSDCVIHTHKEGDLY 149

[Close]

BLAST of Chy3G054080 vs. ExPASy TrEMBL
Match: A0A5D3CIL4 (Ferredoxin OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold304G00840 PE=3 SV=1)

HSP 1 Score: 285.0 bits (728), Expect = 1.9e-73
Identity = 142/149 (95.30%), Postives = 145/149 (97.32%), Query Frame = 0


Query: 13  MSTVTLPTSSLIKPPTLRRSNALVQRPSSLCSFRSVSRSFGLKSSQFKVSAMASYKVKLI 72
           MSTV LPTS LIK PTLRRSNALVQRPSSLCSFRSVS+SFGLKSSQ KVSAMASYKVKLI
Sbjct: 1   MSTVILPTSCLIKTPTLRRSNALVQRPSSLCSFRSVSQSFGLKSSQSKVSAMASYKVKLI 60

Query: 73  GPDGEENEFEAPDDAYILDSAENAGLDLPYSCRAGACSTCAGQVVSGTVDQTDGSFLDDK 132
           GP+GEENEFEAPDDAYILDSAENAGLDLPYSCRAGACSTCAGQVVSGTVDQTDGSFLDDK
Sbjct: 61  GPNGEENEFEAPDDAYILDSAENAGLDLPYSCRAGACSTCAGQVVSGTVDQTDGSFLDDK 120

Query: 133 QMEKGYVLTCVAYPQSDCVIHTHKEGDLY 162
           QME+GYVLTCVAYPQSDCVIHTHKEGDLY
Sbjct: 121 QMEQGYVLTCVAYPQSDCVIHTHKEGDLY 149

[Close]

BLAST of Chy3G054080 vs. ExPASy TrEMBL
Match: A0A1S3C4A6 (Ferredoxin OS=Cucumis melo OX=3656 GN=LOC103496509 PE=3 SV=1)

HSP 1 Score: 285.0 bits (728), Expect = 1.9e-73
Identity = 142/149 (95.30%), Postives = 145/149 (97.32%), Query Frame = 0


Query: 13  MSTVTLPTSSLIKPPTLRRSNALVQRPSSLCSFRSVSRSFGLKSSQFKVSAMASYKVKLI 72
           MSTV LPTS LIK PTLRRSNALVQRPSSLCSFRSVS+SFGLKSSQ KVSAMASYKVKLI
Sbjct: 1   MSTVILPTSCLIKTPTLRRSNALVQRPSSLCSFRSVSQSFGLKSSQSKVSAMASYKVKLI 60

Query: 73  GPDGEENEFEAPDDAYILDSAENAGLDLPYSCRAGACSTCAGQVVSGTVDQTDGSFLDDK 132
           GP+GEENEFEAPDDAYILDSAENAGLDLPYSCRAGACSTCAGQVVSGTVDQTDGSFLDDK
Sbjct: 61  GPNGEENEFEAPDDAYILDSAENAGLDLPYSCRAGACSTCAGQVVSGTVDQTDGSFLDDK 120

Query: 133 QMEKGYVLTCVAYPQSDCVIHTHKEGDLY 162
           QME+GYVLTCVAYPQSDCVIHTHKEGDLY
Sbjct: 121 QMEQGYVLTCVAYPQSDCVIHTHKEGDLY 149

[Close]

BLAST of Chy3G054080 vs. ExPASy TrEMBL
Match: A0A6J1E8R7 (Ferredoxin OS=Cucurbita moschata OX=3662 GN=LOC111430444 PE=3 SV=1)

HSP 1 Score: 265.8 bits (678), Expect = 1.2e-67
Identity = 133/149 (89.26%), Postives = 140/149 (93.96%), Query Frame = 0


Query: 13  MSTVTLPTSSLIKPPTLRRSNALVQRPSSLCSFRSVSRSFGLKSSQFKVSAMASYKVKLI 72
           MSTV LPTS LI+  T R+S ALVQRPSSL SFRSVSR+FGLKSS FKVSAMASYKVKLI
Sbjct: 1   MSTVRLPTSCLIRNATPRKSCALVQRPSSLSSFRSVSRAFGLKSSSFKVSAMASYKVKLI 60

Query: 73  GPDGEENEFEAPDDAYILDSAENAGLDLPYSCRAGACSTCAGQVVSGTVDQTDGSFLDDK 132
           GP+GEENEFEAPDD YILDSAE+AGLDLPYSCRAGACSTCAGQVVSGTVDQTDGSFLDD+
Sbjct: 61  GPNGEENEFEAPDDTYILDSAESAGLDLPYSCRAGACSTCAGQVVSGTVDQTDGSFLDDQ 120

Query: 133 QMEKGYVLTCVAYPQSDCVIHTHKEGDLY 162
           QMEKGYVLTCVAYPQSDCVIHTHKEGDL+
Sbjct: 121 QMEKGYVLTCVAYPQSDCVIHTHKEGDLF 149

[Close]

BLAST of Chy3G054080 vs. ExPASy TrEMBL
Match: A0A6J1JQ79 (Ferredoxin OS=Cucurbita maxima OX=3661 GN=LOC111487329 PE=3 SV=1)

HSP 1 Score: 261.9 bits (668), Expect = 1.7e-66
Identity = 131/149 (87.92%), Postives = 139/149 (93.29%), Query Frame = 0


Query: 13  MSTVTLPTSSLIKPPTLRRSNALVQRPSSLCSFRSVSRSFGLKSSQFKVSAMASYKVKLI 72
           MSTV LPTS LI+  T R+S ALVQRPSSL SFR+VSR+FGLKSS FKVSAMASYKVKLI
Sbjct: 1   MSTVRLPTSCLIRNATPRKSCALVQRPSSLGSFRNVSRAFGLKSSSFKVSAMASYKVKLI 60

Query: 73  GPDGEENEFEAPDDAYILDSAENAGLDLPYSCRAGACSTCAGQVVSGTVDQTDGSFLDDK 132
           GP+GEENEFEAPDD YILDSAE+AGLDLPYSCRAGACSTCAGQVVSGTVDQ DGSFLDD+
Sbjct: 61  GPNGEENEFEAPDDTYILDSAESAGLDLPYSCRAGACSTCAGQVVSGTVDQADGSFLDDQ 120

Query: 133 QMEKGYVLTCVAYPQSDCVIHTHKEGDLY 162
           QMEKGYVLTCVAYPQSDCVIHTHKEGDL+
Sbjct: 121 QMEKGYVLTCVAYPQSDCVIHTHKEGDLF 149

[Close]

BLAST of Chy3G054080 vs. NCBI nr
Match: XP_011656571.1 (ferredoxin, root R-B1 [Cucumis sativus] >KGN46037.1 hypothetical protein Csa_005181 [Cucumis sativus])

HSP 1 Score: 299 bits (765), Expect = 5.84e-102
Identity = 148/149 (99.33%), Postives = 149/149 (100.00%), Query Frame = 0


Query: 13  MSTVTLPTSSLIKPPTLRRSNALVQRPSSLCSFRSVSRSFGLKSSQFKVSAMASYKVKLI 72
           MSTVTLPTSSLIKPPTLRRSNALVQRPSSLCSFRSVSRSFGLKSSQFKVSAMASYKVKLI
Sbjct: 1   MSTVTLPTSSLIKPPTLRRSNALVQRPSSLCSFRSVSRSFGLKSSQFKVSAMASYKVKLI 60

Query: 73  GPDGEENEFEAPDDAYILDSAENAGLDLPYSCRAGACSTCAGQVVSGTVDQTDGSFLDDK 132
           GPDGEENEF+APDDAYILDSAENAGLDLPYSCRAGACSTCAGQVVSGTVDQTDGSFLDDK
Sbjct: 61  GPDGEENEFDAPDDAYILDSAENAGLDLPYSCRAGACSTCAGQVVSGTVDQTDGSFLDDK 120

Query: 133 QMEKGYVLTCVAYPQSDCVIHTHKEGDLY 161
           QMEKGYVLTCVAYPQSDCVIHTHKEGDLY
Sbjct: 121 QMEKGYVLTCVAYPQSDCVIHTHKEGDLY 149

[Close]

BLAST of Chy3G054080 vs. NCBI nr
Match: XP_008456600.1 (PREDICTED: ferredoxin, root R-B2-like [Cucumis melo] >TYK11763.1 ferredoxin, root R-B2-like [Cucumis melo var. makuwa])

HSP 1 Score: 285 bits (728), Expect = 2.56e-96
Identity = 142/149 (95.30%), Postives = 145/149 (97.32%), Query Frame = 0


Query: 13  MSTVTLPTSSLIKPPTLRRSNALVQRPSSLCSFRSVSRSFGLKSSQFKVSAMASYKVKLI 72
           MSTV LPTS LIK PTLRRSNALVQRPSSLCSFRSVS+SFGLKSSQ KVSAMASYKVKLI
Sbjct: 1   MSTVILPTSCLIKTPTLRRSNALVQRPSSLCSFRSVSQSFGLKSSQSKVSAMASYKVKLI 60

Query: 73  GPDGEENEFEAPDDAYILDSAENAGLDLPYSCRAGACSTCAGQVVSGTVDQTDGSFLDDK 132
           GP+GEENEFEAPDDAYILDSAENAGLDLPYSCRAGACSTCAGQVVSGTVDQTDGSFLDDK
Sbjct: 61  GPNGEENEFEAPDDAYILDSAENAGLDLPYSCRAGACSTCAGQVVSGTVDQTDGSFLDDK 120

Query: 133 QMEKGYVLTCVAYPQSDCVIHTHKEGDLY 161
           QME+GYVLTCVAYPQSDCVIHTHKEGDLY
Sbjct: 121 QMEQGYVLTCVAYPQSDCVIHTHKEGDLY 149

[Close]

BLAST of Chy3G054080 vs. NCBI nr
Match: KAG7032935.1 (Ferredoxin-3, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 270 bits (689), Expect = 3.07e-90
Identity = 135/156 (86.54%), Postives = 144/156 (92.31%), Query Frame = 0


Query: 6   YYYSISNMSTVTLPTSSLIKPPTLRRSNALVQRPSSLCSFRSVSRSFGLKSSQFKVSAMA 65
           ++YS   MSTV LPTS LI+  T R+S ALVQRPSSL SFRSVSR+FGLKSS FKVSAMA
Sbjct: 3   FHYSTPIMSTVRLPTSCLIRNATPRKSCALVQRPSSLSSFRSVSRAFGLKSSSFKVSAMA 62

Query: 66  SYKVKLIGPDGEENEFEAPDDAYILDSAENAGLDLPYSCRAGACSTCAGQVVSGTVDQTD 125
           SYKVKLIGP+GEENEFEAPDD YILDSAE+AGLDLPYSCRAGACSTCAGQVVSGTVDQTD
Sbjct: 63  SYKVKLIGPNGEENEFEAPDDTYILDSAESAGLDLPYSCRAGACSTCAGQVVSGTVDQTD 122

Query: 126 GSFLDDKQMEKGYVLTCVAYPQSDCVIHTHKEGDLY 161
           GSFLDD+QMEKGYVLTCVAYPQSDCVIHTHKEGDL+
Sbjct: 123 GSFLDDQQMEKGYVLTCVAYPQSDCVIHTHKEGDLF 158

[Close]

BLAST of Chy3G054080 vs. NCBI nr
Match: XP_038884210.1 (ferredoxin, root R-B2-like [Benincasa hispida] >XP_038884211.1 ferredoxin, root R-B2-like [Benincasa hispida] >XP_038884212.1 ferredoxin, root R-B2-like [Benincasa hispida])

HSP 1 Score: 268 bits (684), Expect = 1.31e-89
Identity = 133/149 (89.26%), Postives = 140/149 (93.96%), Query Frame = 0


Query: 13  MSTVTLPTSSLIKPPTLRRSNALVQRPSSLCSFRSVSRSFGLKSSQFKVSAMASYKVKLI 72
           M T+ LPTS LIK  T RRSNALVQRPSSLCS RSVSR+FGLKSS F+VSAMA+YKVKLI
Sbjct: 1   MLTIKLPTSCLIKTTTPRRSNALVQRPSSLCSVRSVSRAFGLKSSSFRVSAMATYKVKLI 60

Query: 73  GPDGEENEFEAPDDAYILDSAENAGLDLPYSCRAGACSTCAGQVVSGTVDQTDGSFLDDK 132
           GP+GEENEFEAPDDAYILDSAE+AGLDLPYSCRAGACSTCAGQVVSGTVDQ+DGSFLDDK
Sbjct: 61  GPNGEENEFEAPDDAYILDSAEDAGLDLPYSCRAGACSTCAGQVVSGTVDQSDGSFLDDK 120

Query: 133 QMEKGYVLTCVAYPQSDCVIHTHKEGDLY 161
           QMEKGYVLTCVAYPQSDCVI THKEGDLY
Sbjct: 121 QMEKGYVLTCVAYPQSDCVIQTHKEGDLY 149

[Close]

BLAST of Chy3G054080 vs. NCBI nr
Match: XP_022922440.1 (ferredoxin, root R-B2-like [Cucurbita moschata] >XP_022922445.1 ferredoxin, root R-B2-like [Cucurbita moschata])

HSP 1 Score: 265 bits (678), Expect = 1.07e-88
Identity = 133/149 (89.26%), Postives = 140/149 (93.96%), Query Frame = 0


Query: 13  MSTVTLPTSSLIKPPTLRRSNALVQRPSSLCSFRSVSRSFGLKSSQFKVSAMASYKVKLI 72
           MSTV LPTS LI+  T R+S ALVQRPSSL SFRSVSR+FGLKSS FKVSAMASYKVKLI
Sbjct: 1   MSTVRLPTSCLIRNATPRKSCALVQRPSSLSSFRSVSRAFGLKSSSFKVSAMASYKVKLI 60

Query: 73  GPDGEENEFEAPDDAYILDSAENAGLDLPYSCRAGACSTCAGQVVSGTVDQTDGSFLDDK 132
           GP+GEENEFEAPDD YILDSAE+AGLDLPYSCRAGACSTCAGQVVSGTVDQTDGSFLDD+
Sbjct: 61  GPNGEENEFEAPDDTYILDSAESAGLDLPYSCRAGACSTCAGQVVSGTVDQTDGSFLDDQ 120

Query: 133 QMEKGYVLTCVAYPQSDCVIHTHKEGDLY 161
           QMEKGYVLTCVAYPQSDCVIHTHKEGDL+
Sbjct: 121 QMEKGYVLTCVAYPQSDCVIHTHKEGDLF 149

[Close]

BLAST of Chy3G054080 vs. TAIR 10
Match: AT2G27510.1 (ferredoxin 3 )

HSP 1 Score: 185.3 bits (469), Expect = 4.0e-47
Identity = 97/155 (62.58%), Postives = 118/155 (76.13%), Query Frame = 0


Query: 13  MSTVTLPTSSLIKPP-TLRRSNALVQRPS---SLCSFRSVSRSFGLKSSQFKVSAMAS-- 72
           M+TV + ++S+ K     + +N L+   S   S+ S + VSRSFGLK S     A  S  
Sbjct: 1   MATVRISSTSMTKAVLRSQTTNKLITNKSYNLSVGSTKRVSRSFGLKCSANSGGATMSAV 60

Query: 73  YKVKLIGPDGEENEFEAPDDAYILDSAENAGLDLPYSCRAGACSTCAGQVVSGTVDQTDG 132
           YKVKL+GPDG+E+EFE  DD YILD+AE AG+DLPYSCRAGACSTCAGQ+VSG VDQ+DG
Sbjct: 61  YKVKLLGPDGQEDEFEVQDDQYILDAAEEAGVDLPYSCRAGACSTCAGQIVSGNVDQSDG 120

Query: 133 SFLDDKQMEKGYVLTCVAYPQSDCVIHTHKEGDLY 162
           SFL+D  +EKGYVLTCVAYPQSDCVIHTHKE +L+
Sbjct: 121 SFLEDSHLEKGYVLTCVAYPQSDCVIHTHKETELF 155

[Close]

BLAST of Chy3G054080 vs. TAIR 10
Match: AT1G10960.1 (ferredoxin 1 )

HSP 1 Score: 156.4 bits (394), Expect = 2.0e-38
Identity = 86/146 (58.90%), Postives = 107/146 (73.29%), Query Frame = 0


Query: 17  TLPTSSLIKPPTLRRSNALVQRPSSLCS--FRSVSRSFGLKSSQF---KVSAMASYKVKL 76
           T  +S+++    LRR     Q P SL S  F +    FGLKSS     +V+AMA+YKVK 
Sbjct: 4   TALSSAIVSTSFLRRQ----QTPISLRSLPFANTQSLFGLKSSTARGGRVTAMATYKVKF 63

Query: 77  IGPDGEENEFEAPDDAYILDSAENAGLDLPYSCRAGACSTCAGQVVSGTVDQTDGSFLDD 136
           I P+GE+ E E  +D Y+LD+AE AGLDLPYSCRAG+CS+CAG+VVSG++DQ+D SFLDD
Sbjct: 64  ITPEGEQ-EVECEEDVYVLDAAEEAGLDLPYSCRAGSCSSCAGKVVSGSIDQSDQSFLDD 123

Query: 137 KQMEKGYVLTCVAYPQSDCVIHTHKE 158
           +QM +GYVLTCVAYP SD VI THKE
Sbjct: 124 EQMSEGYVLTCVAYPTSDVVIETHKE 144

[Close]

BLAST of Chy3G054080 vs. TAIR 10
Match: AT1G60950.1 (2Fe-2S ferredoxin-like superfamily protein )

HSP 1 Score: 149.1 bits (375), Expect = 3.2e-36
Identity = 83/149 (55.70%), Postives = 106/149 (71.14%), Query Frame = 0


Query: 17  TLPTSSLIKPPTLRRSNALVQRPSSLCSFRSVSRS--FGLKSSQF---KVSAMASYKVKL 76
           T  +S+++    +RRS A    P SL S  S +    FGLKS      +V+AMA+YKVK 
Sbjct: 4   TALSSAIVGTSFIRRSPA----PISLRSLPSANTQSLFGLKSGTARGGRVTAMATYKVKF 63

Query: 77  IGPDGEENEFEAPDDAYILDSAENAGLDLPYSCRAGACSTCAGQVVSGTVDQTDGSFLDD 136
           I P+G E E E  DD Y+LD+AE AG+DLPYSCRAG+CS+CAG+VVSG+VDQ+D SFLDD
Sbjct: 64  ITPEG-ELEVECDDDVYVLDAAEEAGIDLPYSCRAGSCSSCAGKVVSGSVDQSDQSFLDD 123

Query: 137 KQMEKGYVLTCVAYPQSDCVIHTHKEGDL 161
           +Q+ +G+VLTC AYP SD  I THKE D+
Sbjct: 124 EQIGEGFVLTCAAYPTSDVTIETHKEEDI 147

[Close]

BLAST of Chy3G054080 vs. TAIR 10
Match: AT5G10000.1 (ferredoxin 4 )

HSP 1 Score: 143.7 bits (361), Expect = 1.3e-34
Identity = 75/146 (51.37%), Postives = 102/146 (69.86%), Query Frame = 0


Query: 18  LPTSSLIKPPTLRRSNALVQRPSSLCSFRSVSRSFGLKSSQ---FKVSAMASYKVKLIGP 77
           L +S +IK P + R   +    + L +  + +  FGL SS+    KV A  S KVKLI P
Sbjct: 5   LYSSYIIKIPVISR---ISPSQAQLTTRLNNTTYFGLSSSRGNFGKVFAKESRKVKLISP 64

Query: 78  DGEENEFEAPDDAYILDSAENAGLDLPYSCRAGACSTCAGQVVSGTVDQTDGSFLDDKQM 137
           +GEE E E  +D  IL+SAENAGL+LPYSCR+G C TC G++VSG VDQ+ GSFL+++Q+
Sbjct: 65  EGEEQEIEGNEDCCILESAENAGLELPYSCRSGTCGTCCGKLVSGKVDQSLGSFLEEEQI 124

Query: 138 EKGYVLTCVAYPQSDCVIHTHKEGDL 161
           +KGY+LTC+A P  DCV++THK+ DL
Sbjct: 125 QKGYILTCIALPLEDCVVYTHKQSDL 147

[Close]

BLAST of Chy3G054080 vs. TAIR 10
Match: AT4G14890.1 (2Fe-2S ferredoxin-like superfamily protein )

HSP 1 Score: 85.5 bits (210), Expect = 4.3e-17
Identity = 52/147 (35.37%), Postives = 75/147 (51.02%), Query Frame = 0


Query: 14  STVTLPTSSLIKPPTLRRSNALVQRPSSLCSFRSVSRSFGLKSSQFKVSAMASYKVKLIG 73
           ST++LP   L    +    NA +   ++  +F +  R               +YKV ++ 
Sbjct: 11  STISLPKPYLSNSFSFPLRNATLSTTTNRRNFLTTGRIIA-----------RAYKV-VVE 70

Query: 74  PDGEENEFEAPDDAYILDSAENAGLDLPYSCRAGACSTCAGQVVSGTVDQTDGSFLDDKQ 133
            DG+  E E   D  IL  A ++GLD+PY C  G C TC  ++V+GTVDQ+ G  L D  
Sbjct: 71  HDGKTTELEVEPDETILSKALDSGLDVPYDCNLGVCMTCPAKLVTGTVDQS-GGMLSDDV 130

Query: 134 MEKGYVLTCVAYPQSDCVIHTHKEGDL 161
           +E+GY L C +YP SDC I    E +L
Sbjct: 131 VERGYTLLCASYPTSDCHIKMIPEEEL 144

The following BLAST results are available for this feature:

BLAST of Chy3G054080 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P27788	1.4e-49	65.79	Ferredoxin-3, chloroplastic OS=Zea mays OX=4577 GN=FDX3 PE=1 SV=1	[more]
Q9ZQG8	5.6e-46	62.58	Ferredoxin-3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=FD3 PE=1 SV=1	[more]
P14937	9.2e-41	77.32	Ferredoxin, root R-B2 OS=Raphanus sativus OX=3726 PE=1 SV=1	[more]
P14936	1.6e-40	77.32	Ferredoxin, root R-B1 OS=Raphanus sativus OX=3726 PE=1 SV=1	[more]
P94044	3.9e-39	64.41	Ferredoxin-6, chloroplastic OS=Zea mays OX=4577 GN=FDX6 PE=2 SV=1	[more]

BLAST of Chy3G054080 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KNA3	9.8e-78	99.33	Ferredoxin OS=Cucumis sativus OX=3659 GN=Csa_5G413260 PE=3 SV=1	[more]
A0A5D3CIL4	1.9e-73	95.30	Ferredoxin OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold304G00840 PE=...	[more]
A0A1S3C4A6	1.9e-73	95.30	Ferredoxin OS=Cucumis melo OX=3656 GN=LOC103496509 PE=3 SV=1	[more]
A0A6J1E8R7	1.2e-67	89.26	Ferredoxin OS=Cucurbita moschata OX=3662 GN=LOC111430444 PE=3 SV=1	[more]
A0A6J1JQ79	1.7e-66	87.92	Ferredoxin OS=Cucurbita maxima OX=3661 GN=LOC111487329 PE=3 SV=1	[more]

BLAST of Chy3G054080 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011656571.1	5.84e-102	99.33	ferredoxin, root R-B1 [Cucumis sativus] >KGN46037.1 hypothetical protein Csa_005...	[more]
XP_008456600.1	2.56e-96	95.30	PREDICTED: ferredoxin, root R-B2-like [Cucumis melo] >TYK11763.1 ferredoxin, roo...	[more]
KAG7032935.1	3.07e-90	86.54	Ferredoxin-3, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma...	[more]
XP_038884210.1	1.31e-89	89.26	ferredoxin, root R-B2-like [Benincasa hispida] >XP_038884211.1 ferredoxin, root ...	[more]
XP_022922440.1	1.07e-88	89.26	ferredoxin, root R-B2-like [Cucurbita moschata] >XP_022922445.1 ferredoxin, root...	[more]

BLAST of Chy3G054080 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G27510.1	4.0e-47	62.58	ferredoxin 3	[more]
AT1G10960.1	2.0e-38	58.90	ferredoxin 1	[more]
AT1G60950.1	3.2e-36	55.70	2Fe-2S ferredoxin-like superfamily protein	[more]
AT5G10000.1	1.3e-34	51.37	ferredoxin 4	[more]
AT4G14890.1	4.3e-17	35.37	2Fe-2S ferredoxin-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001041	2Fe-2S ferredoxin-type iron-sulfur binding domain	PFAM	PF00111	Fer2	coord: 74..147 e-value: 4.7E-20 score: 71.3
IPR001041	2Fe-2S ferredoxin-type iron-sulfur binding domain	PROSITE	PS51085	2FE2S_FER_2	coord: 67..158 score: 13.062149
IPR001041	2Fe-2S ferredoxin-type iron-sulfur binding domain	CDD	cd00207	fer2	coord: 69..153 e-value: 1.34058E-32 score: 109.407
IPR012675	Beta-grasp domain superfamily	GENE3D	3.10.20.30		coord: 64..161 e-value: 2.5E-36 score: 125.4
IPR010241	Ferredoxin [2Fe-2S], plant	TIGRFAM	TIGR02008	TIGR02008	coord: 65..161 e-value: 4.7E-50 score: 165.4
None	No IPR available	PANTHER	PTHR43112	FERREDOXIN	coord: 13..161
None	No IPR available	PANTHER	PTHR43112:SF30	FERREDOXIN-3, CHLOROPLASTIC	coord: 13..161
IPR006058	2Fe-2S ferredoxin, iron-sulphur binding site	PROSITE	PS00197	2FE2S_FER_1	coord: 104..112
IPR036010	2Fe-2S ferredoxin-like superfamily	SUPERFAMILY	54292	2Fe-2S ferredoxin-like	coord: 50..157

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy3G054080.1	Chy3G054080.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0022900	electron transport chain
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0051537	2 iron, 2 sulfur cluster binding
molecular_function	GO:0009055	electron transfer activity
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0051536	iron-sulfur cluster binding