Chy3G053630 (gene) Cucumber (hystrix) v1

Overview


Name	Chy3G053630
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	Unknown protein
Location	chrH03: 5317494 .. 5318034 (+)
RNA-Seq Expression	Chy3G053630
Synteny	Chy3G053630

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATGAAGAAAGAAAAGGTGACAACGACGATGAAGAAGAATTTTTCAGGTTTGAGATCAGCCAATGATCCAAAGAACTTGTGTCTGATTCAATTCTTTAGAAAATTTGTAATAATTAGAATTTAAAACATTTAGAAAGCATTATTTCTCTCAAAATTTGGTTGCCTGTTGCTGATTGATTATATGTATGCTGCTTTGTTTATATTTGGTGGCTTTCAAATTTGAATCTTAGTTAGTTTAGTTGCTTTTATGCAGTGGTGAGAGCCCCATCAGAGCTTCCACCAACAGCCTTTTGCTTCACACCTCTGTACATGCTGAGGTAACTAACCTTACCTAACTGAAAACAAATGTTCTGACGGTTCTTTTGATGTTCCATTTTTTGGTCTAGTGTTCATATTTTTGTGACTCCTGAGTGCTAACAAATGCCAGATTGTGCCAACTATTTCTGTTCAGTTCACAAATATGGCCTGGATGAAATATGAATACCTGTTTGTTCGAGGTGGGGGAGAATTGTCTGCTTCGTGTTGGTTTGCATCTTGA

mRNA sequence

ATGGATGAAGAAAGAAAAGGTGACAACGACGATGAAGAAGAATTTTTCAGTGGTGAGAGCCCCATCAGAGCTTCCACCAACAGCCTTTTGCTTCACACCTCTGTACATGCTGAGATTGTGCCAACTATTTCTGTTCAGTTCACAAATATGGCCTGGATGAAATATGAATACCTGTTTGTTCGAGGTGGGGGAGAATTGTCTGCTTCGTGTTGGTTTGCATCTTGA

Coding sequence (CDS)

ATGGATGAAGAAAGAAAAGGTGACAACGACGATGAAGAAGAATTTTTCAGTGGTGAGAGCCCCATCAGAGCTTCCACCAACAGCCTTTTGCTTCACACCTCTGTACATGCTGAGATTGTGCCAACTATTTCTGTTCAGTTCACAAATATGGCCTGGATGAAATATGAATACCTGTTTGTTCGAGGTGGGGGAGAATTGTCTGCTTCGTGTTGGTTTGCATCTTGA

Protein sequence

MDEERKGDNDDEEEFFSGESPIRASTNSLLLHTSVHAEIVPTISVQFTNMAWMKYEYLFVRGGGELSASCWFAS*

Homology

[Close]

BLAST of Chy3G053630 vs. ExPASy TrEMBL
Match: A0A0A0KE21 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G041760 PE=4 SV=1)

HSP 1 Score: 147.9 bits (372), Expect = 1.7e-32
Identity = 72/74 (97.30%), Postives = 73/74 (98.65%), Query Frame = 0


Query: 1  MDEERKGDNDDEEEFFSGESPIRASTNSLLLHTSVHAEIVPTISVQFTNMAWMKYEYLFV 60
          MDEE+KGDNDDEEEF SGESPIRASTNSLLLHTSVHAEIVPTISVQFTNMAWMKYEYLFV
Sbjct: 1  MDEEKKGDNDDEEEFLSGESPIRASTNSLLLHTSVHAEIVPTISVQFTNMAWMKYEYLFV 60

Query: 61 RGGGELSASCWFAS 75
          RGGGELSASCWFAS
Sbjct: 61 RGGGELSASCWFAS 74

[Close]

BLAST of Chy3G053630 vs. ExPASy TrEMBL
Match: A0A5A7SV80 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2137G00210 PE=4 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 1.7e-16
Identity = 53/73 (72.60%), Postives = 54/73 (73.97%), Query Frame = 0


Query: 8   DNDDEEEFFSGESPIRASTNSLLLHTSVHAE------IVPTISVQFTNMAWMKYEYLFVR 67
           DNDDEEEF SGESPIRASTNSLLLHTSV+AE      IVPTISVQFTNMAWMKY Y FVR
Sbjct: 172 DNDDEEEFLSGESPIRASTNSLLLHTSVNAESANKCQIVPTISVQFTNMAWMKYVYRFVR 231

Query: 68  GGGELSASCWFAS 75
                S  C   S
Sbjct: 232 VDLSFSDLCSLGS 244

[Close]

BLAST of Chy3G053630 vs. NCBI nr
Match: KGN45991.1 (hypothetical protein Csa_005715 [Cucumis sativus])

HSP 1 Score: 148 bits (374), Expect = 6.48e-45
Identity = 72/74 (97.30%), Postives = 73/74 (98.65%), Query Frame = 0


Query: 1  MDEERKGDNDDEEEFFSGESPIRASTNSLLLHTSVHAEIVPTISVQFTNMAWMKYEYLFV 60
          MDEE+KGDNDDEEEF SGESPIRASTNSLLLHTSVHAEIVPTISVQFTNMAWMKYEYLFV
Sbjct: 1  MDEEKKGDNDDEEEFLSGESPIRASTNSLLLHTSVHAEIVPTISVQFTNMAWMKYEYLFV 60

Query: 61 RGGGELSASCWFAS 74
          RGGGELSASCWFAS
Sbjct: 61 RGGGELSASCWFAS 74

[Close]

BLAST of Chy3G053630 vs. NCBI nr
Match: KAA0033089.1 (uncharacterized protein E6C27_scaffold269G002160 [Cucumis melo var. makuwa] >TYK04645.1 uncharacterized protein E5676_scaffold2137G00210 [Cucumis melo var. makuwa])

HSP 1 Score: 95.5 bits (236), Expect = 1.14e-21
Identity = 52/69 (75.36%), Postives = 53/69 (76.81%), Query Frame = 0


Query: 8   DNDDEEEFFSGESPIRASTNSLLLHTSVHAE------IVPTISVQFTNMAWMKYEYLFVR 67
           DNDDEEEF SGESPIRASTNSLLLHTSV+AE      IVPTISVQFTNMAWMKY Y FVR
Sbjct: 172 DNDDEEEFLSGESPIRASTNSLLLHTSVNAESANKCQIVPTISVQFTNMAWMKYVYRFVR 231

Query: 68  GGGELSASC 70
                S  C
Sbjct: 232 VDLSFSDLC 240

The following BLAST results are available for this feature:

BLAST of Chy3G053630 vs.


Match Name	E-value	Identity	Description

BLAST of Chy3G053630 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KE21	1.7e-32	97.30	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G041760 PE=4 SV=1	[more]
A0A5A7SV80	1.7e-16	72.60	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of Chy3G053630 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN45991.1	6.48e-45	97.30	hypothetical protein Csa_005715 [Cucumis sativus]	[more]
KAA0033089.1	1.14e-21	75.36	uncharacterized protein E6C27_scaffold269G002160 [Cucumis melo var. makuwa] >TYK...	[more]

BLAST of Chy3G053630 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..20
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..15

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy3G053630.1	Chy3G053630.1	mRNA