Chy3G053240 (gene) Cucumber (hystrix) v1

Overview


Name	Chy3G053240
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	Mediator of RNA polymerase II transcription subunit 12-like isoform X1
Location	chrH03: 4392367 .. 4392810 (-)
RNA-Seq Expression	Chy3G053240
Synteny	Chy3G053240

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AGGGAGAACATTCACTATATGTACGATGTCCCTATTGTACCTTCTCCAGTCCAAAGGAGACGTGCTCGAGGACAAAAGCCTGATCAATTGGAAGAAGTTGACCAACACGTGGAAGAAGTGCCTCCCATGACACAGACACAGAGCGAGCATGGTTACGTTAGTCCAATAATGATGATGCCAGCATTTGGAATGACATATCATGATTCAGGAGTCGGTCAATCACCAGACTTTGGAATAAGATATTATAATTTAGAGGCAGGTCCATCATCATCAAACTTTGGGCAACAATACTATGATTTAGGAAGCGATCCATCATCTTCATACATGCATGGTCACGGGCGCGGTCGTGGAGAACATAATGAACATTTGTACTACGAAGTGCCTGCAGCAGTACCCGAGCAACTAGATGAGCAACAACAACATGAGAATCAGGAAGAAATACAA

mRNA sequence

AGGGAGAACATTCACTATATGTACGATGTCCCTATTGTACCTTCTCCAGTCCAAAGGAGACGTGCTCGAGGACAAAAGCCTGATCAATTGGAAGAAGTTGACCAACACGTGGAAGAAGTGCCTCCCATGACACAGACACAGAGCGAGCATGGTTACGTTAGTCCAATAATGATGATGCCAGCATTTGGAATGACATATCATGATTCAGGAGTCGGTCAATCACCAGACTTTGGAATAAGATATTATAATTTAGAGGCAGGTCCATCATCATCAAACTTTGGGCAACAATACTATGATTTAGGAAGCGATCCATCATCTTCATACATGCATGGTCACGGGCGCGGTCGTGGAGAACATAATGAACATTTGTACTACGAAGTGCCTGCAGCAGTACCCGAGCAACTAGATGAGCAACAACAACATGAGAATCAGGAAGAAATACAA

Coding sequence (CDS)

AGGGAGAACATTCACTATATGTACGATGTCCCTATTGTACCTTCTCCAGTCCAAAGGAGACGTGCTCGAGGACAAAAGCCTGATCAATTGGAAGAAGTTGACCAACACGTGGAAGAAGTGCCTCCCATGACACAGACACAGAGCGAGCATGGTTACGTTAGTCCAATAATGATGATGCCAGCATTTGGAATGACATATCATGATTCAGGAGTCGGTCAATCACCAGACTTTGGAATAAGATATTATAATTTAGAGGCAGGTCCATCATCATCAAACTTTGGGCAACAATACTATGATTTAGGAAGCGATCCATCATCTTCATACATGCATGGTCACGGGCGCGGTCGTGGAGAACATAATGAACATTTGTACTACGAAGTGCCTGCAGCAGTACCCGAGCAACTAGATGAGCAACAACAACATGAGAATCAGGAAGAAATACAA

Protein sequence

RENIHYMYDVPIVPSPVQRRRARGQKPDQLEEVDQHVEEVPPMTQTQSEHGYVSPIMMMPAFGMTYHDSGVGQSPDFGIRYYNLEAGPSSSNFGQQYYDLGSDPSSSYMHGHGRGRGEHNEHLYYEVPAAVPEQLDEQQQHENQEEIQ

Homology

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BLAST of Chy3G053240 vs. ExPASy TrEMBL
Match: A0A5A7SU33 (Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold400G00810 PE=4 SV=1)

HSP 1 Score: 243.4 bits (620), Expect = 5.8e-61
Identity = 126/162 (77.78%), Postives = 133/162 (82.10%), Query Frame = 0


Query: 2   ENIHYMYDVPIVPSPVQRRRARGQKPDQLEEVDQHVEEVPPMTQTQSEHGYVSPIMMMPA 61
           ENIHYMYDVPIVP+PVQRRR   Q+PDQLEEVDQH EEVPPMTQTQSEH YVSP+MMMP 
Sbjct: 592 ENIHYMYDVPIVPAPVQRRRPLVQEPDQLEEVDQHGEEVPPMTQTQSEHNYVSPVMMMPT 651

Query: 62  FGMTYHDSGVGQSPDFGIRYYNLEAGPSSSNFGQQYYDLGSDPSSSYMHGHGRGRGEHNE 121
           FG TY+DSGVGQS DFG  YYN EAG SS++FGQQYYDLGSDPSSSYMHGHGRGRGEHNE
Sbjct: 652 FGTTYYDSGVGQSSDFGRGYYNSEAGQSSTDFGQQYYDLGSDPSSSYMHGHGRGRGEHNE 711

Query: 122 HLYYEVPAAVPE---------------QLDEQQQHENQEEIQ 149
           +LYYEVPAAVPE               Q DEQQQ ENQEEIQ
Sbjct: 712 YLYYEVPAAVPEQSNELQQQENAAVPGQSDEQQQQENQEEIQ 753

[Close]

BLAST of Chy3G053240 vs. ExPASy TrEMBL
Match: A0A5A7UKC7 (Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold222G001140 PE=4 SV=1)

HSP 1 Score: 241.9 bits (616), Expect = 1.7e-60
Identity = 125/162 (77.16%), Postives = 133/162 (82.10%), Query Frame = 0


Query: 2   ENIHYMYDVPIVPSPVQRRRARGQKPDQLEEVDQHVEEVPPMTQTQSEHGYVSPIMMMPA 61
           ENIHYMYDVPIVP+PVQRRR   Q+PDQLEEVDQH EEVPPMTQT+SEH YVSP+MMMP 
Sbjct: 600 ENIHYMYDVPIVPAPVQRRRPLVQEPDQLEEVDQHGEEVPPMTQTKSEHNYVSPVMMMPT 659

Query: 62  FGMTYHDSGVGQSPDFGIRYYNLEAGPSSSNFGQQYYDLGSDPSSSYMHGHGRGRGEHNE 121
           FG TY+DSGVGQS DFG  YYN EAG SS++FGQQYYDLGSDPSSSYMHGHGRGRGEHNE
Sbjct: 660 FGTTYYDSGVGQSSDFGRGYYNSEAGQSSTDFGQQYYDLGSDPSSSYMHGHGRGRGEHNE 719

Query: 122 HLYYEVPAAVPEQLDE---------------QQQHENQEEIQ 149
           +LYYEVPAAVPEQ DE               QQQ ENQEEIQ
Sbjct: 720 YLYYEVPAAVPEQSDELQQQENAAVPGQSDGQQQQENQEEIQ 761

[Close]

BLAST of Chy3G053240 vs. ExPASy TrEMBL
Match: A0A5A7VIP6 (Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold38G001330 PE=4 SV=1)

HSP 1 Score: 240.4 bits (612), Expect = 4.9e-60
Identity = 125/162 (77.16%), Postives = 132/162 (81.48%), Query Frame = 0


Query: 2   ENIHYMYDVPIVPSPVQRRRARGQKPDQLEEVDQHVEEVPPMTQTQSEHGYVSPIMMMPA 61
           ENIHYMYDVPIVP+PVQRRR   Q+PDQLEEVDQH EEVPPMTQTQSEH YVSP+MMMP 
Sbjct: 443 ENIHYMYDVPIVPAPVQRRRPLVQEPDQLEEVDQHGEEVPPMTQTQSEHNYVSPVMMMPT 502

Query: 62  FGMTYHDSGVGQSPDFGIRYYNLEAGPSSSNFGQQYYDLGSDPSSSYMHGHGRGRGEHNE 121
           FG TY+DS VGQS DFG  YYN EAG SS++FGQQYYDLGSDPSSSYMHGHGRGRGEHNE
Sbjct: 503 FGTTYYDSEVGQSSDFGRGYYNSEAGQSSTDFGQQYYDLGSDPSSSYMHGHGRGRGEHNE 562

Query: 122 HLYYEVPAAVPE---------------QLDEQQQHENQEEIQ 149
           +LYYEVPAAVPE               Q DEQQQ ENQEEIQ
Sbjct: 563 YLYYEVPAAVPEQSNELQQQENAAVPGQSDEQQQQENQEEIQ 604

[Close]

BLAST of Chy3G053240 vs. ExPASy TrEMBL
Match: A0A5D3DUI1 (Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold325G001210 PE=4 SV=1)

HSP 1 Score: 239.2 bits (609), Expect = 1.1e-59
Identity = 120/144 (83.33%), Postives = 128/144 (88.89%), Query Frame = 0


Query: 2   ENIHYMYDVPIVPSPVQRRRARGQKPDQLEEVDQHVEEVPPM--TQTQSEHGYVSPIMMM 61
           ENIHYMYDVPIVP+PVQRRR   Q+ DQLEEVDQH EEVPPM  TQTQSEH YVSP+MMM
Sbjct: 821 ENIHYMYDVPIVPAPVQRRRPLVQESDQLEEVDQHGEEVPPMTQTQTQSEHNYVSPVMMM 880

Query: 62  PAFGMTYHDSGVGQSPDFGIRYYNLEAGPSSSNFGQQYYDLGSDPSSSYMHGHGRGRGEH 121
           P FGMTY+DSGVGQS DFG  YYN EAG SS++FGQQYYDLGSDPSSSYMHGHGRGRGEH
Sbjct: 881 PTFGMTYYDSGVGQSSDFGRGYYNSEAGQSSTDFGQQYYDLGSDPSSSYMHGHGRGRGEH 940

Query: 122 NEHLYYEVPAAVPEQLDEQQQHEN 144
           NE+LYY+VPAAVPEQ DEQQQ EN
Sbjct: 941 NEYLYYKVPAAVPEQSDEQQQQEN 964

[Close]

BLAST of Chy3G053240 vs. ExPASy TrEMBL
Match: A0A5D3BAB0 (Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold110G001240 PE=4 SV=1)

HSP 1 Score: 239.2 bits (609), Expect = 1.1e-59
Identity = 117/142 (82.39%), Postives = 127/142 (89.44%), Query Frame = 0


Query: 2    ENIHYMYDVPIVPSPVQRRRARGQKPDQLEEVDQHVEEVPPMTQTQSEHGYVSPIMMMPA 61
            ENIHYMYDVPIVP+PVQRRR   Q+PDQLEEVDQH +EVPPMTQTQSEH YVSP+MMMP 
Sbjct: 1091 ENIHYMYDVPIVPAPVQRRRPLVQEPDQLEEVDQHGKEVPPMTQTQSEHNYVSPVMMMPT 1150

Query: 62   FGMTYHDSGVGQSPDFGIRYYNLEAGPSSSNFGQQYYDLGSDPSSSYMHGHGRGRGEHNE 121
            FG TY+DSGVGQS DFG  YYN +AG SS++FGQQYYDLGSDPSSSYMHGHGRGRG+HNE
Sbjct: 1151 FGTTYYDSGVGQSSDFGRGYYNSKAGQSSTDFGQQYYDLGSDPSSSYMHGHGRGRGKHNE 1210

Query: 122  HLYYEVPAAVPEQLDEQQQHEN 144
            +LYYEVPAAVPEQ DE QQ EN
Sbjct: 1211 YLYYEVPAAVPEQSDELQQQEN 1232

[Close]

BLAST of Chy3G053240 vs. NCBI nr
Match: XP_016900498.1 (PREDICTED: GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo])

HSP 1 Score: 241 bits (615), Expect = 5.74e-78
Identity = 120/144 (83.33%), Postives = 128/144 (88.89%), Query Frame = 0


Query: 2   ENIHYMYDVPIVPSPVQRRRARGQKPDQLEEVDQHVEEVPPMTQTQ--SEHGYVSPIMMM 61
           ENIHYMYDVPIVP+PVQRRR   Q+ DQLEEVDQH EEVPPMTQTQ  SEH YVSP+MMM
Sbjct: 58  ENIHYMYDVPIVPAPVQRRRPLVQESDQLEEVDQHGEEVPPMTQTQTQSEHNYVSPVMMM 117

Query: 62  PAFGMTYHDSGVGQSPDFGIRYYNLEAGPSSSNFGQQYYDLGSDPSSSYMHGHGRGRGEH 121
           P FGMTY+DSGVGQS DFG  YYN EAG SS++FGQQYYDLGSDPSSSYMHGHGRGRGEH
Sbjct: 118 PTFGMTYYDSGVGQSSDFGRGYYNSEAGQSSTDFGQQYYDLGSDPSSSYMHGHGRGRGEH 177

Query: 122 NEHLYYEVPAAVPEQLDEQQQHEN 143
           NE+LYY+VPAAVPEQ DEQQQ EN
Sbjct: 178 NEYLYYKVPAAVPEQSDEQQQQEN 201

[Close]

BLAST of Chy3G053240 vs. NCBI nr
Match: XP_008449513.1 (PREDICTED: mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo])

HSP 1 Score: 241 bits (615), Expect = 1.09e-77
Identity = 120/144 (83.33%), Postives = 128/144 (88.89%), Query Frame = 0


Query: 2   ENIHYMYDVPIVPSPVQRRRARGQKPDQLEEVDQHVEEVPPMTQTQ--SEHGYVSPIMMM 61
           ENIHYMYDVPIVP+PVQRRR   Q+ DQLEEVDQH EEVPPMTQTQ  SEH YVSP+MMM
Sbjct: 78  ENIHYMYDVPIVPAPVQRRRPLVQESDQLEEVDQHGEEVPPMTQTQTQSEHNYVSPVMMM 137

Query: 62  PAFGMTYHDSGVGQSPDFGIRYYNLEAGPSSSNFGQQYYDLGSDPSSSYMHGHGRGRGEH 121
           P FGMTY+DSGVGQS DFG  YYN EAG SS++FGQQYYDLGSDPSSSYMHGHGRGRGEH
Sbjct: 138 PTFGMTYYDSGVGQSSDFGRGYYNSEAGQSSTDFGQQYYDLGSDPSSSYMHGHGRGRGEH 197

Query: 122 NEHLYYEVPAAVPEQLDEQQQHEN 143
           NE+LYY+VPAAVPEQ DEQQQ EN
Sbjct: 198 NEYLYYKVPAAVPEQSDEQQQQEN 221

[Close]

BLAST of Chy3G053240 vs. NCBI nr
Match: TYK18891.1 (mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 240 bits (612), Expect = 2.29e-76
Identity = 126/164 (76.83%), Postives = 133/164 (81.10%), Query Frame = 0


Query: 2   ENIHYMYDVPIVPSPVQRRRARGQKPDQLEEVDQHVEEVPPMTQTQ--SEHGYVSPIMMM 61
           ENIHYMYDVPIVP+PVQRRR   Q+PDQLEEVDQH EEVPPMTQTQ  SEH YVSP+MMM
Sbjct: 142 ENIHYMYDVPIVPAPVQRRRPLVQEPDQLEEVDQHGEEVPPMTQTQTQSEHNYVSPVMMM 201

Query: 62  PAFGMTYHDSGVGQSPDFGIRYYNLEAGPSSSNFGQQYYDLGSDPSSSYMHGHGRGRGEH 121
           P FG TY+DSGVGQS DFG  YYN EAG SS++FGQQYYDLGSDPSSSYMHGHGRGRGEH
Sbjct: 202 PTFGTTYYDSGVGQSSDFGRGYYNSEAGQSSTDFGQQYYDLGSDPSSSYMHGHGRGRGEH 261

Query: 122 NEHLYYEVPAAVPEQL---------------DEQQQHENQEEIQ 148
           NE+LYYEVPAAVPEQ                DEQQQ ENQEEIQ
Sbjct: 262 NEYLYYEVPAAVPEQSNELQQQENAAVPGQSDEQQQQENQEEIQ 305

[Close]

BLAST of Chy3G053240 vs. NCBI nr
Match: KAA0051233.1 (mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 239 bits (610), Expect = 4.60e-76
Identity = 119/144 (82.64%), Postives = 127/144 (88.19%), Query Frame = 0


Query: 2   ENIHYMYDVPIVPSPVQRRRARGQKPDQLEEVDQHVEEVPPMTQTQ--SEHGYVSPIMMM 61
           ENIHYMYDVPIVP+PVQRRR   Q+PDQLEEVDQH EEVPPMTQTQ  SEH YVSP+MMM
Sbjct: 142 ENIHYMYDVPIVPAPVQRRRPLVQEPDQLEEVDQHGEEVPPMTQTQTQSEHNYVSPVMMM 201

Query: 62  PAFGMTYHDSGVGQSPDFGIRYYNLEAGPSSSNFGQQYYDLGSDPSSSYMHGHGRGRGEH 121
           P FG TY+DSGVGQS DFG  YYN EAG SS++FGQQYYDLGSDPSSSYMH HGRGRGEH
Sbjct: 202 PTFGTTYYDSGVGQSSDFGRGYYNSEAGQSSTDFGQQYYDLGSDPSSSYMHDHGRGRGEH 261

Query: 122 NEHLYYEVPAAVPEQLDEQQQHEN 143
           NE+LYYEVPAAVP+Q DEQQQ EN
Sbjct: 262 NEYLYYEVPAAVPKQSDEQQQQEN 285

[Close]

BLAST of Chy3G053240 vs. NCBI nr
Match: KAA0051227.1 (mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 235 bits (600), Expect = 3.66e-75
Identity = 119/147 (80.95%), Postives = 129/147 (87.76%), Query Frame = 0


Query: 2   ENIHYMYDVPIVPSPVQRRRARGQKPDQLEEVDQHVEEVPPMTQTQSEHGYVSPIMMMPA 61
           ENIHYMYDVPIV +P+QRRR+  Q+ DQLEEVDQH EEVPP+TQTQS+HGYVSP+MMM A
Sbjct: 115 ENIHYMYDVPIVHAPIQRRRSLVQESDQLEEVDQHGEEVPPVTQTQSKHGYVSPVMMMQA 174

Query: 62  FGMTYHDSGVGQSPDFGIRYYNLEAGPSSSNFGQQYYDLGSDPSSSYMHGHGRGRGEHNE 121
           F  TY+DSGVGQS DFG  YYN EAGPSSSNF QQY DLGSD SSSYMH HGRGRGEHNE
Sbjct: 175 FETTYYDSGVGQSSDFGTGYYNSEAGPSSSNFRQQYCDLGSDSSSSYMHCHGRGRGEHNE 234

Query: 122 HLYYEVPAAVPEQLDEQQQHENQEEIQ 148
           +LYYEVPAA+ EQLDEQQQ ENQEEIQ
Sbjct: 235 YLYYEVPAAILEQLDEQQQQENQEEIQ 261

The following BLAST results are available for this feature:

BLAST of Chy3G053240 vs.


Match Name	E-value	Identity	Description

BLAST of Chy3G053240 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SU33	5.8e-61	77.78	Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo va...	[more]
A0A5A7UKC7	1.7e-60	77.16	Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo va...	[more]
A0A5A7VIP6	4.9e-60	77.16	Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumi...	[more]
A0A5D3DUI1	1.1e-59	83.33	Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumi...	[more]
A0A5D3BAB0	1.1e-59	82.39	Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo va...	[more]

BLAST of Chy3G053240 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_016900498.1	5.74e-78	83.33	PREDICTED: GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumi...	[more]
XP_008449513.1	1.09e-77	83.33	PREDICTED: mediator of RNA polymerase II transcription subunit 12-like isoform X...	[more]
TYK18891.1	2.29e-76	76.83	mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis ...	[more]
KAA0051233.1	4.60e-76	82.64	mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis ...	[more]
KAA0051227.1	3.66e-75	80.95	mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis ...	[more]

BLAST of Chy3G053240 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy3G053240.1	Chy3G053240.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010073	meristem maintenance
molecular_function	GO:0008270	zinc ion binding