Chy3G052960 (gene) Cucumber (hystrix) v1

Overview
NameChy3G052960
Typegene
OrganismCucumis hystrix (Cucumber (hystrix) v1)
DescriptionSWIM-type domain-containing protein
LocationchrH03: 3598328 .. 3598708 (-)
RNA-Seq ExpressionChy3G052960
SyntenyChy3G052960
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATGAAAGTCAACAGTTCATTATGAAGTTAAATGTGGGATGTTGCAGGTGTCAAGTATGGGATGTTGAGGAAATTTCATGTGCATATGCGCTTGCTATTCTACGAATGCTTAATTTAGATACATATTCATATGTATTTGAGTTTTATTATACAGAAATGATATTAGAAACATACAGTGGTTGCATTCATCTTGTTGGCACTCATTTGTATTGGAGAGTTGAAGATGCTGTTCAGAAAGCATTACATCCAGTCTTTAAATTATGTCAAGCTAGAAAACCAAGAAAACAAAGAATTTCATATGTAGGCGAAAGTAATAGTTCATTAAGATGTTTCAACTGTAATCATAAAGGACACAATAGTAGGACTTGCAAAGTTTAA

mRNA sequence

ATGGATGAAAGTCAACAGTTCATTATGAAGTTAAATGTGGGATGTTGCAGGTGTCAAGTATGGGATGTTGAGGAAATTTCATGTGCATATGCGCTTGCTATTCTACGAATGCTTAATTTAGATACATATTCATATGTATTTGAGTTTTATTATACAGAAATGATATTAGAAACATACAGTGGTTGCATTCATCTTGTTGGCACTCATTTGTATTGGAGAGTTGAAGATGCTGTTCAGAAAGCATTACATCCAGTCTTTAAATTATGTCAAGCTAGAAAACCAAGAAAACAAAGAATTTCATATGTAGGCGAAAGTAATAGTTCATTAAGATGTTTCAACTGTAATCATAAAGGACACAATAGTAGGACTTGCAAAGTTTAA

Coding sequence (CDS)

ATGGATGAAAGTCAACAGTTCATTATGAAGTTAAATGTGGGATGTTGCAGGTGTCAAGTATGGGATGTTGAGGAAATTTCATGTGCATATGCGCTTGCTATTCTACGAATGCTTAATTTAGATACATATTCATATGTATTTGAGTTTTATTATACAGAAATGATATTAGAAACATACAGTGGTTGCATTCATCTTGTTGGCACTCATTTGTATTGGAGAGTTGAAGATGCTGTTCAGAAAGCATTACATCCAGTCTTTAAATTATGTCAAGCTAGAAAACCAAGAAAACAAAGAATTTCATATGTAGGCGAAAGTAATAGTTCATTAAGATGTTTCAACTGTAATCATAAAGGACACAATAGTAGGACTTGCAAAGTTTAA

Protein sequence

MDESQQFIMKLNVGCCRCQVWDVEEISCAYALAILRMLNLDTYSYVFEFYYTEMILETYSGCIHLVGTHLYWRVEDAVQKALHPVFKLCQARKPRKQRISYVGESNSSLRCFNCNHKGHNSRTCKV*
Homology
BLAST of Chy3G052960 vs. ExPASy TrEMBL
Match: A0A5D3C7L7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold265G00780 PE=4 SV=1)

HSP 1 Score: 171.8 bits (434), Expect = 1.9e-39
Identity = 84/122 (68.85%), Postives = 95/122 (77.87%), Query Frame = 0

Query: 4   SQQFIMKLNVGCCRCQVWDVEEISCAYALAILRMLNLDTYSYVFEFYYTEMILETYSGCI 63
           +QQFI+KLNV CC C+VWDVEEI CA+AL +LRMLNLDTYSYV EFYY E + ETY+GCI
Sbjct: 204 NQQFIVKLNVECCSCRVWDVEEIPCAHALVVLRMLNLDTYSYVSEFYYRETLSETYNGCI 263

Query: 64  HLVGTHLYWRVEDAVQKALHPVFKLCQARKPRKQRISYVGESNSSLRCFNCNHKGHNSRT 123
             VG+H  WRV D+V K L PVFK  QA +P KQRI  V E NSS +C NCN KGHNSRT
Sbjct: 264 QPVGSHFDWRVVDSVMKILPPVFKR-QAGRPGKQRIPSVEEFNSSTKCSNCNRKGHNSRT 323

Query: 124 CK 126
           CK
Sbjct: 324 CK 324

BLAST of Chy3G052960 vs. ExPASy TrEMBL
Match: A0A5D3CZ48 (SWIM-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1327G00160 PE=4 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 5.4e-23
Identity = 53/125 (42.40%), Postives = 78/125 (62.40%), Query Frame = 0

Query: 1   MDESQQFIMKLNVGCCRCQVWDVEEISCAYALAILRMLNLDTYSYVFEFYYTEMILETYS 60
           +D  + F++KLN   C C  WD+EEI CA+AL ++R LNL+ Y++V ++YY  ++ ETY 
Sbjct: 81  VDGGKNFLVKLNCNSCNCLFWDLEEIPCAHALIVIRSLNLNPYAFVSQYYYATVLSETYG 140

Query: 61  GCIHLVGTHLYWRVEDAVQKALHPVFKLCQARKPRKQRISYVGESNSSLRCFNCNHKGHN 120
           G + L+G H  W V +     L  VF+   A +PRK+RI  + E + SL+C  C   GHN
Sbjct: 141 GLVRLIGNHTDWSVVEVKNNILPLVFRR-PAGRPRKRRIPSIDEVSKSLKCSRCKRAGHN 200

Query: 121 SRTCK 126
            RTC+
Sbjct: 201 IRTCR 204

BLAST of Chy3G052960 vs. ExPASy TrEMBL
Match: A0A5A7V6N4 (SWIM-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold79G001490 PE=4 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 9.2e-23
Identity = 52/124 (41.94%), Postives = 76/124 (61.29%), Query Frame = 0

Query: 1   MDESQQFIMKLNVGCCRCQVWDVEEISCAYALAILRMLNLDTYSYVFEFYYTEMILETYS 60
           +D  + F++KLN   C C  WD+EEISCA+AL ++R LNL+ Y++V ++YY  ++  TY 
Sbjct: 516 VDGGKNFLVKLNCNSCSCLFWDLEEISCAHALIVIRSLNLNPYAFVSQYYYATVLCATYG 575

Query: 61  GCIHLVGTHLYWRVEDAVQKALHPVFKLCQARKPRKQRISYVGESNSSLRCFNCNHKGHN 120
           G +  +G H  W V +     L P+F+    R PRK+RI  +GE + S +C  C   GHN
Sbjct: 576 GLVRSIGNHTDWSVVEVNDNILPPIFRRPTGR-PRKRRIPSIGEVSKSSKCSRCKRAGHN 635

Query: 121 SRTC 125
            RTC
Sbjct: 636 IRTC 638

BLAST of Chy3G052960 vs. ExPASy TrEMBL
Match: A0A5D3BVP4 (SWIM-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold298G00470 PE=4 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 1.6e-22
Identity = 52/125 (41.60%), Postives = 77/125 (61.60%), Query Frame = 0

Query: 1   MDESQQFIMKLNVGCCRCQVWDVEEISCAYALAILRMLNLDTYSYVFEFYYTEMILETYS 60
           +D  + F++KLN   C C  WD+EEI CA+AL ++R LNL+ Y++V ++YY  ++  TY 
Sbjct: 81  VDGGKNFLVKLNCNSCSCLFWDLEEIPCAHALIVIRSLNLNPYAFVSQYYYATVLSATYG 140

Query: 61  GCIHLVGTHLYWRVEDAVQKALHPVFKLCQARKPRKQRISYVGESNSSLRCFNCNHKGHN 120
           G +  +G H  W V +     L PVF+   A +PRK+RI  +GE + S +C  C   GHN
Sbjct: 141 GLVRPIGNHTDWSVVEVNDNILPPVFRR-PAGRPRKRRIPSIGEVSKSSKCSRCKRDGHN 200

Query: 121 SRTCK 126
            RTC+
Sbjct: 201 IRTCR 204

BLAST of Chy3G052960 vs. ExPASy TrEMBL
Match: A0A5A7SVB1 (ZnF_PMZ domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold845G00530 PE=4 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 3.5e-22
Identity = 52/124 (41.94%), Postives = 75/124 (60.48%), Query Frame = 0

Query: 1   MDESQQFIMKLNVGCCRCQVWDVEEISCAYALAILRMLNLDTYSYVFEFYYTEMILETYS 60
           +D  + F++KLN   C C  WD+EEI CAYAL ++R LNL+ Y++V ++YY  ++  TY 
Sbjct: 127 VDGGKNFLVKLNCNSCSCLFWDLEEIPCAYALIVIRSLNLNPYAFVSQYYYATVLSATYG 186

Query: 61  GCIHLVGTHLYWRVEDAVQKALHPVFKLCQARKPRKQRISYVGESNSSLRCFNCNHKGHN 120
           G +  +  H  W V +     L PVF+   A +PRK+RI  +GE + S +C  C   GHN
Sbjct: 187 GLVRPIDNHTDWSVVEVNDNILPPVFRR-SAGRPRKRRIPSIGEVSKSSKCSRCKRAGHN 246

Query: 121 SRTC 125
            RTC
Sbjct: 247 IRTC 249

BLAST of Chy3G052960 vs. NCBI nr
Match: TYK07957.1 (hypothetical protein E5676_scaffold265G00780 [Cucumis melo var. makuwa])

HSP 1 Score: 173 bits (439), Expect = 1.27e-50
Identity = 84/122 (68.85%), Postives = 95/122 (77.87%), Query Frame = 0

Query: 4   SQQFIMKLNVGCCRCQVWDVEEISCAYALAILRMLNLDTYSYVFEFYYTEMILETYSGCI 63
           +QQFI+KLNV CC C+VWDVEEI CA+AL +LRMLNLDTYSYV EFYY E + ETY+GCI
Sbjct: 204 NQQFIVKLNVECCSCRVWDVEEIPCAHALVVLRMLNLDTYSYVSEFYYRETLSETYNGCI 263

Query: 64  HLVGTHLYWRVEDAVQKALHPVFKLCQARKPRKQRISYVGESNSSLRCFNCNHKGHNSRT 123
             VG+H  WRV D+V K L PVFK  QA +P KQRI  V E NSS +C NCN KGHNSRT
Sbjct: 264 QPVGSHFDWRVVDSVMKILPPVFKR-QAGRPGKQRIPSVEEFNSSTKCSNCNRKGHNSRT 323

Query: 124 CK 125
           CK
Sbjct: 324 CK 324

BLAST of Chy3G052960 vs. NCBI nr
Match: XP_038904248.1 (uncharacterized protein LOC120090597 [Benincasa hispida])

HSP 1 Score: 140 bits (354), Expect = 1.16e-37
Identity = 68/127 (53.54%), Postives = 89/127 (70.08%), Query Frame = 0

Query: 1   MDESQQFIMKLNVGCCRCQVWDVEEISCAYALAILRMLNLDTYSYVFEFYYTEMILETYS 60
           MD  +QF++KLN+G C C+VWD EEISC++AL IL +LN+D YSYV  +YY+  +  TY 
Sbjct: 224 MDGDKQFLVKLNLGSCSCRVWDFEEISCSHALVILELLNMDIYSYVSNYYYSSTLSWTYL 283

Query: 61  GCIHLVGTHLYWRVEDAVQKALHPVFKLCQARKPRKQRISYVGES-NSSLRCFNCNHKGH 120
           GC+  +G H  WRV D   +AL P+FK   A  P+KQRI    E+ +SSLRC  C+ KGH
Sbjct: 284 GCVRPIGVHSNWRVLDDDIRALPPIFKR-SAGGPKKQRIPSKSEAKSSSLRCSRCHSKGH 343

Query: 121 NSRTCKV 126
           NSRTCK+
Sbjct: 344 NSRTCKL 349

BLAST of Chy3G052960 vs. NCBI nr
Match: XP_038896605.1 (uncharacterized protein LOC120084863 [Benincasa hispida])

HSP 1 Score: 141 bits (356), Expect = 3.38e-36
Identity = 68/127 (53.54%), Postives = 89/127 (70.08%), Query Frame = 0

Query: 1   MDESQQFIMKLNVGCCRCQVWDVEEISCAYALAILRMLNLDTYSYVFEFYYTEMILETYS 60
           MD  +QF++KLN   C  QVWD EEI C++ L +LR+LN+D YSY+  +YY+  +  TY 
Sbjct: 574 MDGDKQFLVKLNFESCSLQVWDFEEIPCSHVLVVLRLLNMDIYSYISNYYYSSALSWTYM 633

Query: 61  GCIHLVGTHLYWRVEDAVQKALHPVFKLCQARKPRKQRISYVGES-NSSLRCFNCNHKGH 120
           GC+  VG H  WRV D   +AL P+FK   AR+P+KQRI  VGE+ +SSLRC  C+ KGH
Sbjct: 634 GCVRPVGVHSNWRVLDDGIRALPPIFKH-SARRPKKQRIPSVGEAKSSSLRCSRCHSKGH 693

Query: 121 NSRTCKV 126
           NSRTCK+
Sbjct: 694 NSRTCKL 699

BLAST of Chy3G052960 vs. NCBI nr
Match: XP_011654398.1 (uncharacterized protein LOC105435382 [Cucumis sativus])

HSP 1 Score: 123 bits (308), Expect = 6.85e-32
Identity = 59/124 (47.58%), Postives = 85/124 (68.55%), Query Frame = 0

Query: 4   SQQFIMKLNVGCCRCQVWDVEEISCAYALAILRMLNLDTYSYVFEFYYTEMILETYSGCI 63
            +Q I+KLN+G C C+VWD  EI C++AL +L MLNL++YSYV ++Y+++ +L TY G +
Sbjct: 116 DKQLIVKLNLGSCSCRVWDFHEIPCSHALVVLWMLNLNSYSYVSDYYHSQTLLSTYLGHV 175

Query: 64  HLVGTHLYWRVEDAVQKALHPVFKLCQARKPRKQRISYVGESNSS-LRCFNCNHKGHNSR 123
             +G H  WR+ +    AL P+FK    R P+  R+  +GE NSS  RC +C+ KGHNSR
Sbjct: 176 LPIGVHSNWRLVNDDIGALPPIFKRSVGR-PKNLRVPSIGEVNSSSTRCSSCHGKGHNSR 235

Query: 124 TCKV 126
           TCK+
Sbjct: 236 TCKL 238

BLAST of Chy3G052960 vs. NCBI nr
Match: TYK15459.1 (uncharacterized protein E5676_scaffold477G00290 [Cucumis melo var. makuwa] >TYK17070.1 uncharacterized protein E5676_scaffold1327G00160 [Cucumis melo var. makuwa] >TYK19773.1 uncharacterized protein E5676_scaffold1676G00100 [Cucumis melo var. makuwa])

HSP 1 Score: 118 bits (296), Expect = 1.80e-30
Identity = 53/125 (42.40%), Postives = 78/125 (62.40%), Query Frame = 0

Query: 1   MDESQQFIMKLNVGCCRCQVWDVEEISCAYALAILRMLNLDTYSYVFEFYYTEMILETYS 60
           +D  + F++KLN   C C  WD+EEI CA+AL ++R LNL+ Y++V ++YY  ++ ETY 
Sbjct: 81  VDGGKNFLVKLNCNSCNCLFWDLEEIPCAHALIVIRSLNLNPYAFVSQYYYATVLSETYG 140

Query: 61  GCIHLVGTHLYWRVEDAVQKALHPVFKLCQARKPRKQRISYVGESNSSLRCFNCNHKGHN 120
           G + L+G H  W V +     L  VF+   A +PRK+RI  + E + SL+C  C   GHN
Sbjct: 141 GLVRLIGNHTDWSVVEVKNNILPLVFRR-PAGRPRKRRIPSIDEVSKSLKCSRCKRAGHN 200

Query: 121 SRTCK 125
            RTC+
Sbjct: 201 IRTCR 204

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3C7L71.9e-3968.85Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3CZ485.4e-2342.40SWIM-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5... [more]
A0A5A7V6N49.2e-2341.94SWIM-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6... [more]
A0A5D3BVP41.6e-2241.60SWIM-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5... [more]
A0A5A7SVB13.5e-2241.94ZnF_PMZ domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2... [more]
Match NameE-valueIdentityDescription
TYK07957.11.27e-5068.85hypothetical protein E5676_scaffold265G00780 [Cucumis melo var. makuwa][more]
XP_038904248.11.16e-3753.54uncharacterized protein LOC120090597 [Benincasa hispida][more]
XP_038896605.13.38e-3653.54uncharacterized protein LOC120084863 [Benincasa hispida][more]
XP_011654398.16.85e-3247.58uncharacterized protein LOC105435382 [Cucumis sativus][more]
TYK15459.11.80e-3042.40uncharacterized protein E5676_scaffold477G00290 [Cucumis melo var. makuwa] >TYK1... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001878Zinc finger, CCHC-typePROSITEPS50158ZF_CCHCcoord: 110..125
score: 8.960441

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Chy3G052960.1Chy3G052960.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding