Chy3G052930 (gene) Cucumber (hystrix) v1

Overview
NameChy3G052930
Typegene
OrganismCucumis hystrix (Cucumber (hystrix) v1)
DescriptionWW domain-containing protein
LocationchrH03: 3542751 .. 3542984 (+)
RNA-Seq ExpressionChy3G052930
SyntenyChy3G052930
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTGGATATGGAATTTCCTGAGTTGTCTTTGGCTCCAACAAGGCAGTTTGTGAAAAGTGATGAGGTGAATTCTTCCTCATCAAAGCACTTAGTAGAAATTAGCAGCCAATGTTCTAGGAAGAGGAAGCTTCTTCTACATGATCATCATCACTTTATTAAGTCTCAAACAAGTGTTGATCTTCAACTCAAAGATCCTCTTCCTCTTCATTGGGAGCAATGTCTTGATCTTCAG

mRNA sequence

ATGTTGGATATGGAATTTCCTGAGTTGTCTTTGGCTCCAACAAGGCAGTTTGTGAAAAGTGATGAGGTGAATTCTTCCTCATCAAAGCACTTAGTAGAAATTAGCAGCCAATGTTCTAGGAAGAGGAAGCTTCTTCTACATGATCATCATCACTTTATTAAGTCTCAAACAAGTGTTGATCTTCAACTCAAAGATCCTCTTCCTCTTCATTGGGAGCAATGTCTTGATCTTCAG

Coding sequence (CDS)

ATGTTGGATATGGAATTTCCTGAGTTGTCTTTGGCTCCAACAAGGCAGTTTGTGAAAAGTGATGAGGTGAATTCTTCCTCATCAAAGCACTTAGTAGAAATTAGCAGCCAATGTTCTAGGAAGAGGAAGCTTCTTCTACATGATCATCATCACTTTATTAAGTCTCAAACAAGTGTTGATCTTCAACTCAAAGATCCTCTTCCTCTTCATTGGGAGCAATGTCTTGATCTTCAG

Protein sequence

MLDMEFPELSLAPTRQFVKSDEVNSSSSKHLVEISSQCSRKRKLLLHDHHHFIKSQTSVDLQLKDPLPLHWEQCLDLQ
Homology
BLAST of Chy3G052930 vs. ExPASy TrEMBL
Match: A0A0A0K842 (WW domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G023890 PE=4 SV=1)

HSP 1 Score: 158.7 bits (400), Expect = 1.0e-35
Identity = 77/78 (98.72%), Postives = 78/78 (100.00%), Query Frame = 0

Query: 1  MLDMEFPELSLAPTRQFVKSDEVNSSSSKHLVEISSQCSRKRKLLLHDHHHFIKSQTSVD 60
          MLDMEFPELSLAPTRQFVKSDE+NSSSSKHLVEISSQCSRKRKLLLHDHHHFIKSQTSVD
Sbjct: 1  MLDMEFPELSLAPTRQFVKSDEMNSSSSKHLVEISSQCSRKRKLLLHDHHHFIKSQTSVD 60

Query: 61 LQLKDPLPLHWEQCLDLQ 79
          LQLKDPLPLHWEQCLDLQ
Sbjct: 61 LQLKDPLPLHWEQCLDLQ 78

BLAST of Chy3G052930 vs. ExPASy TrEMBL
Match: A0A6J1JVM3 (uncharacterized protein LOC111488725 OS=Cucurbita maxima OX=3661 GN=LOC111488725 PE=4 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 1.0e-19
Identity = 57/78 (73.08%), Postives = 64/78 (82.05%), Query Frame = 0

Query: 4  MEFPELSLAPTRQFVKSDEVNSSSSKHLVEISSQCSRKRKLLLHDHH---HFIKSQTSVD 63
          M+ P LSLAPT QF+KSD++NSSS+K L + +S CSRKRKLLLH HH   H I SQTSVD
Sbjct: 1  MDAPRLSLAPT-QFMKSDDINSSSNK-LQQTNSSCSRKRKLLLHHHHPYPHHINSQTSVD 60

Query: 64 LQLKDPLPLHWEQCLDLQ 79
          LQLKDPLPL WEQCLDLQ
Sbjct: 61 LQLKDPLPLDWEQCLDLQ 76

BLAST of Chy3G052930 vs. ExPASy TrEMBL
Match: A0A6J1EVH5 (uncharacterized protein LOC111436347 OS=Cucurbita moschata OX=3662 GN=LOC111436347 PE=4 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 1.0e-19
Identity = 57/78 (73.08%), Postives = 64/78 (82.05%), Query Frame = 0

Query: 4  MEFPELSLAPTRQFVKSDEVNSSSSKHLVEISSQCSRKRKLLLHDHH---HFIKSQTSVD 63
          ME P LSLAPT QF+K+D++NSSS+K L + +S CSRKRKLLLH HH   H I SQTSVD
Sbjct: 1  MEAPHLSLAPT-QFMKTDDINSSSNK-LQQTNSSCSRKRKLLLHHHHPYPHHINSQTSVD 60

Query: 64 LQLKDPLPLHWEQCLDLQ 79
          LQLKDPLPL WEQCLDLQ
Sbjct: 61 LQLKDPLPLDWEQCLDLQ 76

BLAST of Chy3G052930 vs. ExPASy TrEMBL
Match: A0A2P5AJ05 (Rho GTPase activating protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_327550 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 1.3e-11
Identity = 46/85 (54.12%), Postives = 53/85 (62.35%), Query Frame = 0

Query: 4  MEFPELSLAPTRQFV-KSDEVNSSSSKHLVEISSQCSRKRKLLLHDHHHFI--------- 63
          MEFPELSLAPT+ FV K+  +  S     +E  S  SRKRKL   DHHH +         
Sbjct: 1  MEFPELSLAPTQAFVNKNGNIGLS-----LESESNASRKRKLFQDDHHHLLMKTNGNHID 60

Query: 64 KSQTSVDLQLKDPLPLHWEQCLDLQ 79
          +   SVDLQLKDPLPL WEQCLDL+
Sbjct: 61 QPPLSVDLQLKDPLPLDWEQCLDLE 80

BLAST of Chy3G052930 vs. ExPASy TrEMBL
Match: A0A6J1D9E4 (uncharacterized protein LOC111018581 OS=Momordica charantia OX=3673 GN=LOC111018581 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 1.3e-11
Identity = 50/81 (61.73%), Postives = 56/81 (69.14%), Query Frame = 0

Query: 4  MEFPELSLAPTRQFVKSDE-----VNSSSSKHLVEISSQCSRKRKLL-LHDHHHFIKSQT 63
          ME PELSLAPT+    SD+     + SSS + LVE S  CS+KRKLL LHDH      + 
Sbjct: 1  MEVPELSLAPTKFVKISDDDDEMMMMSSSPQKLVE-SKSCSKKRKLLVLHDH------KA 60

Query: 64 SVDLQLKDPLPLHWEQCLDLQ 79
          SVDLQLKDPLPL WEQCLDLQ
Sbjct: 61 SVDLQLKDPLPLDWEQCLDLQ 74

BLAST of Chy3G052930 vs. NCBI nr
Match: XP_011656508.1 (uncharacterized protein LOC105435750 isoform X2 [Cucumis sativus])

HSP 1 Score: 159 bits (402), Expect = 1.71e-47
Identity = 77/78 (98.72%), Postives = 78/78 (100.00%), Query Frame = 0

Query: 1  MLDMEFPELSLAPTRQFVKSDEVNSSSSKHLVEISSQCSRKRKLLLHDHHHFIKSQTSVD 60
          MLDMEFPELSLAPTRQFVKSDE+NSSSSKHLVEISSQCSRKRKLLLHDHHHFIKSQTSVD
Sbjct: 1  MLDMEFPELSLAPTRQFVKSDEMNSSSSKHLVEISSQCSRKRKLLLHDHHHFIKSQTSVD 60

Query: 61 LQLKDPLPLHWEQCLDLQ 78
          LQLKDPLPLHWEQCLDLQ
Sbjct: 61 LQLKDPLPLHWEQCLDLQ 78

BLAST of Chy3G052930 vs. NCBI nr
Match: XP_011656507.1 (uncharacterized protein LOC105435750 isoform X1 [Cucumis sativus] >KAE8646605.1 hypothetical protein Csa_005473 [Cucumis sativus])

HSP 1 Score: 159 bits (402), Expect = 1.87e-47
Identity = 77/78 (98.72%), Postives = 78/78 (100.00%), Query Frame = 0

Query: 1  MLDMEFPELSLAPTRQFVKSDEVNSSSSKHLVEISSQCSRKRKLLLHDHHHFIKSQTSVD 60
          MLDMEFPELSLAPTRQFVKSDE+NSSSSKHLVEISSQCSRKRKLLLHDHHHFIKSQTSVD
Sbjct: 1  MLDMEFPELSLAPTRQFVKSDEMNSSSSKHLVEISSQCSRKRKLLLHDHHHFIKSQTSVD 60

Query: 61 LQLKDPLPLHWEQCLDLQ 78
          LQLKDPLPLHWEQCLDLQ
Sbjct: 61 LQLKDPLPLHWEQCLDLQ 78

BLAST of Chy3G052930 vs. NCBI nr
Match: XP_038886191.1 (uncharacterized protein LOC120076436 isoform X2 [Benincasa hispida])

HSP 1 Score: 132 bits (332), Expect = 6.69e-37
Identity = 66/78 (84.62%), Postives = 70/78 (89.74%), Query Frame = 0

Query: 1  MLDMEFPELSLAPTRQFVKSDEVNSSSSKHLVEISSQCSRKRKLLLHDHHHFIKSQTSVD 60
          +LDME PELSLAPT QFVK DE+NSSS K LVEIS+ CSRKRKLL HDH H+IKSQTSVD
Sbjct: 7  LLDMEVPELSLAPTTQFVKGDEMNSSSKK-LVEISNTCSRKRKLLHHDHQHYIKSQTSVD 66

Query: 61 LQLKDPLPLHWEQCLDLQ 78
          LQLKDPLPLHWEQCLDLQ
Sbjct: 67 LQLKDPLPLHWEQCLDLQ 83

BLAST of Chy3G052930 vs. NCBI nr
Match: XP_038886190.1 (uncharacterized protein LOC120076436 isoform X1 [Benincasa hispida])

HSP 1 Score: 132 bits (332), Expect = 7.28e-37
Identity = 66/78 (84.62%), Postives = 70/78 (89.74%), Query Frame = 0

Query: 1  MLDMEFPELSLAPTRQFVKSDEVNSSSSKHLVEISSQCSRKRKLLLHDHHHFIKSQTSVD 60
          +LDME PELSLAPT QFVK DE+NSSS K LVEIS+ CSRKRKLL HDH H+IKSQTSVD
Sbjct: 7  LLDMEVPELSLAPTTQFVKGDEMNSSSKK-LVEISNTCSRKRKLLHHDHQHYIKSQTSVD 66

Query: 61 LQLKDPLPLHWEQCLDLQ 78
          LQLKDPLPLHWEQCLDLQ
Sbjct: 67 LQLKDPLPLHWEQCLDLQ 83

BLAST of Chy3G052930 vs. NCBI nr
Match: XP_023548823.1 (uncharacterized protein LOC111807358 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 108 bits (269), Expect = 2.01e-27
Identity = 58/78 (74.36%), Postives = 64/78 (82.05%), Query Frame = 0

Query: 4  MEFPELSLAPTRQFVKSDEVNSSSSKHLVEISSQCSRKRKLLLHDHH---HFIKSQTSVD 63
          ME P LSLAPT QF+K+D++NSSS+K L + SS CSRKRKLLLH HH   H I SQTSVD
Sbjct: 1  MEAPHLSLAPT-QFIKTDDINSSSNK-LQQTSSSCSRKRKLLLHHHHSYPHHINSQTSVD 60

Query: 64 LQLKDPLPLHWEQCLDLQ 78
          LQLKDPLPL WEQCLDLQ
Sbjct: 61 LQLKDPLPLDWEQCLDLQ 76

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0K8421.0e-3598.72WW domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G023890 PE=4 SV=... [more]
A0A6J1JVM31.0e-1973.08uncharacterized protein LOC111488725 OS=Cucurbita maxima OX=3661 GN=LOC111488725... [more]
A0A6J1EVH51.0e-1973.08uncharacterized protein LOC111436347 OS=Cucurbita moschata OX=3662 GN=LOC1114363... [more]
A0A2P5AJ051.3e-1154.12Rho GTPase activating protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_327... [more]
A0A6J1D9E41.3e-1161.73uncharacterized protein LOC111018581 OS=Momordica charantia OX=3673 GN=LOC111018... [more]
Match NameE-valueIdentityDescription
XP_011656508.11.71e-4798.72uncharacterized protein LOC105435750 isoform X2 [Cucumis sativus][more]
XP_011656507.11.87e-4798.72uncharacterized protein LOC105435750 isoform X1 [Cucumis sativus] >KAE8646605.1 ... [more]
XP_038886191.16.69e-3784.62uncharacterized protein LOC120076436 isoform X2 [Benincasa hispida][more]
XP_038886190.17.28e-3784.62uncharacterized protein LOC120076436 isoform X1 [Benincasa hispida][more]
XP_023548823.12.01e-2774.36uncharacterized protein LOC111807358 [Cucurbita pepo subsp. pepo][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR14791BOMB/KIRA PROTEINScoord: 4..78
NoneNo IPR availablePANTHERPTHR14791:SF39SUBFAMILY NOT NAMEDcoord: 4..78

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Chy3G052930.1Chy3G052930.1mRNA