Chy3G052730 (gene) Cucumber (hystrix) v1

Overview
NameChy3G052730
Typegene
OrganismCucumis hystrix (Cucumber (hystrix) v1)
DescriptionUnknown protein
LocationchrH03: 3152485 .. 3154210 (+)
RNA-Seq ExpressionChy3G052730
SyntenyChy3G052730
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATTCCCAAGAGGGTTGCTTCATATTTGCCTATCATCTTCAAGTCTCTCCTTCAAATTCCTATGAGCATCTCAAGATTTTTTAGGTTTCAACTTTTTAGACAGCAACCACATGATTCTTCCTCCGCTTCCACCGTCGCACCGGACCCCAAAATTCCCACGGCGGCCAATATCCAAGCTACTCCTCAAACTTCAAGGGGTATCACTTTAGTAAGTATCTCTTCCACTGATCTCTTCTGATTTTTATTTATCTTAAGTACAATAATCACACTCTTACAATTTGGACCTAAAGTCTCCACCAATTCATATGTAAATATTGAATTACTCCATTTCAAATTCTAACTCTTTTTTTTTTTTTTCAACATTTATAGAGATACTTCATCTTACACTTCTAAACTCCTAATACAGACTTTCAAATTCCAACACATATATATTCAATCCACAATTCAAAAGTTAACAAAACACTCTCTTTTGTTTAAATTTTAGAGGTAATTATAGGAATGAAAAGAAATATTATAAGACTTTCTAATTTAGCAATATTTTTTGAAATTTTCAAATATAGCAATTTAAAGTTTGATTTTGTTTTTTATTACGCTAAATTTACTCTATTTAGTGTATTAGCTTTATATTAATTATATATCCCATATACTTTTATGTTTGGTATATTGGTTAACCAACTGATATACTTTATATTTGATATATATTAATCAATCGATGTACTCTTATATTTTGTAGGTACGTTAATTATATCATTGACTTAATTTGGATATTATGTGTAAAGTATCATGATTTAAACATAAGTCTAAGTTATTTTAAAATGAAAGAAAAAAAAAAGTTATTTGCAGCTTGCGTACGCTTAGATAGCTGCCCAATAAAATTTTTACACATGAGATAGGTTTCTTTTTCAACACAAAATTTGATTTGGTTTTATTTTGGTTTTACCGTGTAATAAAAATACTGTAAGAGATAGGTCCATTTAAAAATTAAATTAATTAATTAAGCTAAATTTGAAAGTTGAAAGTTGAGGTCATGTAATTGGATATATGGAATAAAATGGTAGGGATGGTTCTCTAAGTTCATCCAATGGAACGTTAAAGAAGCGATACTAGTAGCTAGATCTTCTCACATCTATACGACTCAATAGACTTAAAGTAACTTTTGAAAGTTATTATACATCGTCAATAGCACTTTCTCTTCCAACAATCAATTTTTTATTTATTTTATCATATACGTTCTCTGTCTGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAACTTTGTAGGGAATTCAAATGAATTGATTGGAGCGTTGCAGATTTAATATAGACTCAAGATAGCTCAAGTCTCCCATAATCTTATGTTTTTTATATAATATATATAAAAAAATTAAATCTAATGTTTTTTATATAATATATATAGAAAAACAGAAATAATACCAATAATAGAAGGAGGTAGTTTAGTCATATAACTATGGTTCGATCTTCTTCCCATTCAAGTTGAAGCCTCCGTTTTTAGCAGTTTTTTCAGATTAATTTTAGTGAATTATAACGTGCATTCGCTACACTGATCGAATATGTGTGCTGTTTTGCAGAGGAAGGATAGAAGGAGAAGGGATTCGCACATAAAACCATGCAGGAGTAATGGAGGAGGTGGCCAAACCAACTCACTCAAATGCGACCGTATTGATCCTCCTCGCTTCGTCCTTTAA

mRNA sequence

ATGATTCCCAAGAGGGTTGCTTCATATTTGCCTATCATCTTCAAGTCTCTCCTTCAAATTCCTATGAGCATCTCAAGATTTTTTAGGTTTCAACTTTTTAGACAGCAACCACATGATTCTTCCTCCGCTTCCACCGTCGCACCGGACCCCAAAATTCCCACGGCGGCCAATATCCAAGCTACTCCTCAAACTTCAAGGGGTATCACTTTAAGGAAGGATAGAAGGAGAAGGGATTCGCACATAAAACCATGCAGGAGTAATGGAGGAGGTGGCCAAACCAACTCACTCAAATGCGACCGTATTGATCCTCCTCGCTTCGTCCTTTAA

Coding sequence (CDS)

ATGATTCCCAAGAGGGTTGCTTCATATTTGCCTATCATCTTCAAGTCTCTCCTTCAAATTCCTATGAGCATCTCAAGATTTTTTAGGTTTCAACTTTTTAGACAGCAACCACATGATTCTTCCTCCGCTTCCACCGTCGCACCGGACCCCAAAATTCCCACGGCGGCCAATATCCAAGCTACTCCTCAAACTTCAAGGGGTATCACTTTAAGGAAGGATAGAAGGAGAAGGGATTCGCACATAAAACCATGCAGGAGTAATGGAGGAGGTGGCCAAACCAACTCACTCAAATGCGACCGTATTGATCCTCCTCGCTTCGTCCTTTAA

Protein sequence

MIPKRVASYLPIIFKSLLQIPMSISRFFRFQLFRQQPHDSSSASTVAPDPKIPTAANIQATPQTSRGITLRKDRRRRDSHIKPCRSNGGGGQTNSLKCDRIDPPRFVL*
Homology
[Close]
BLAST of Chy3G052730 vs. ExPASy TrEMBL
Match: A0A0A0KAN8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G020180 PE=4 SV=1)

HSP 1 Score: 207.2 bits (526), Expect = 3.4e-50
Identity = 104/108 (96.30%), Postives = 105/108 (97.22%), Query Frame = 0 

Query: 1   MIPKRVASYLPIIFKSLLQIPMSISRFFRFQLFRQQPHDSSSASTVAPDPKIPTAANIQA 60
           MIPKRVASYLPIIFKSLLQIPMSISRF RFQLFRQQPHDSSSASTVAPDPKI  AANIQA
Sbjct: 13  MIPKRVASYLPIIFKSLLQIPMSISRFLRFQLFRQQPHDSSSASTVAPDPKILMAANIQA 72

Query: 61  TPQTSRGITLRKDRRRRDSHIKPCRSNGGGGQTNSLKCDRIDPPRFVL 109
           TPQTSRGITLRKDRR+RDSHIKPCRSNGGGGQTNSLKCDRIDPPRFVL
Sbjct: 73  TPQTSRGITLRKDRRKRDSHIKPCRSNGGGGQTNSLKCDRIDPPRFVL 120

[Close]
BLAST of Chy3G052730 vs. NCBI nr
Match: XP_004138359.2 (uncharacterized protein LOC101208209 [Cucumis sativus] >KGN45904.1 hypothetical protein Csa_005171 [Cucumis sativus])

HSP 1 Score: 206 bits (525), Expect = 1.01e-66
Identity = 104/108 (96.30%), Postives = 105/108 (97.22%), Query Frame = 0 

Query: 1   MIPKRVASYLPIIFKSLLQIPMSISRFFRFQLFRQQPHDSSSASTVAPDPKIPTAANIQA 60
           MIPKRVASYLPIIFKSLLQIPMSISRF RFQLFRQQPHDSSSASTVAPDPKI  AANIQA
Sbjct: 13  MIPKRVASYLPIIFKSLLQIPMSISRFLRFQLFRQQPHDSSSASTVAPDPKILMAANIQA 72

Query: 61  TPQTSRGITLRKDRRRRDSHIKPCRSNGGGGQTNSLKCDRIDPPRFVL 108
           TPQTSRGITLRKDRR+RDSHIKPCRSNGGGGQTNSLKCDRIDPPRFVL
Sbjct: 73  TPQTSRGITLRKDRRKRDSHIKPCRSNGGGGQTNSLKCDRIDPPRFVL 120

The following BLAST results are available for this feature:
BLAST of Chy3G052730 vs.
Match NameE-valueIdentityDescription
BLAST of Chy3G052730 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KAN83.4e-5096.30Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G020180 PE=4 SV=1[more]
BLAST of Chy3G052730 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004138359.21.01e-6696.30uncharacterized protein LOC101208209 [Cucumis sativus] >KGN45904.1 hypothetical ... [more]
BLAST of Chy3G052730 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 61..108

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Chy3G052730.1Chy3G052730.1mRNA