Chy3G052700 (gene) Cucumber (hystrix) v1

Overview


Name	Chy3G052700
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	Unknown protein
Location	chrH03: 3107061 .. 3107967 (-)
RNA-Seq Expression	Chy3G052700
Synteny	Chy3G052700

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAAGGTTCAACTGAAAAGAGCAAGAAGCAGAATGATAATGAATCTGATCTTCATCCTATTCCTCACTGTTCTATCATTTTAACAATCTTTGATTCAATCCTTCAACCTTTCATCTCCATTTTGAGGTTCTTTGGTTTTAAACGCGATGCCCCACCTTACCGTCCAGCGTCCTCCTCCCTGGAAGATTGCTACACCGCCGGCTCAAATCCGCCTTCCACGGCGGTCGACCCACCTCATGACGATTCTGTAAGCCTATATCTCTCGACTCTCTCCCTCTTTTTATGTTATTTTATTTTAATTTAACCCTTCCAATTTTTTTTTACCCTTTTAAAGTTTAAGTTTTGTTTGGATTTAGTTGTAACTTTTAACTTCAATTTTTCACTAAATAAATTTTTTAGTTTATCTGTAGTTGACGTTGAATCTATTAATTAATTAAAAATAATTACAAAGTATGGAAAAAATTGTATAATTAATTGAAATTGAATATGAAAAATACATACCATCTAATTAACATCCTAACAAGATATGATATTAGTTTTGCTTATAGAATATTTTAATTTTTTTATATGAAAAGGTGTGTACAGCTTGAGATGTACTGAGTATATTATATAAAATATTGAACATTAAGTTTAAGTGTATAACTTATAGAACCCTGCAGATGAAATTGAAATGAAATACAAATTCAATTTTCAAGAGCAACGTGTTGACAATATAAAACAGAAACAGGGTTTACATTAATTGGACCATTTTTGACGAACTTTTCCGTACAATAACTTCGTTGAAAAATTTATAATTTTAAAGATTGTGTTGCGTTTCTTTGTAGGAGGAAGAAAGTGAGTACTATAGGCCACATGTTCCTCCGCGGCCGCCGTGGAGCACTGGCGGCGGTGGTCAGATAGACTAA

mRNA sequence

ATGCAAGGTTCAACTGAAAAGAGCAAGAAGCAGAATGATAATGAATCTGATCTTCATCCTATTCCTCACTGTTCTATCATTTTAACAATCTTTGATTCAATCCTTCAACCTTTCATCTCCATTTTGAGGTTCTTTGGTTTTAAACGCGATGCCCCACCTTACCGTCCAGCGTCCTCCTCCCTGGAAGATTGCTACACCGCCGGCTCAAATCCGCCTTCCACGGCGGTCGACCCACCTCATGACGATTCTGAGGAAGAAAGTGAGTACTATAGGCCACATGTTCCTCCGCGGCCGCCGTGGAGCACTGGCGGCGGTGGTCAGATAGACTAA

Coding sequence (CDS)

ATGCAAGGTTCAACTGAAAAGAGCAAGAAGCAGAATGATAATGAATCTGATCTTCATCCTATTCCTCACTGTTCTATCATTTTAACAATCTTTGATTCAATCCTTCAACCTTTCATCTCCATTTTGAGGTTCTTTGGTTTTAAACGCGATGCCCCACCTTACCGTCCAGCGTCCTCCTCCCTGGAAGATTGCTACACCGCCGGCTCAAATCCGCCTTCCACGGCGGTCGACCCACCTCATGACGATTCTGAGGAAGAAAGTGAGTACTATAGGCCACATGTTCCTCCGCGGCCGCCGTGGAGCACTGGCGGCGGTGGTCAGATAGACTAA

Protein sequence

MQGSTEKSKKQNDNESDLHPIPHCSIILTIFDSILQPFISILRFFGFKRDAPPYRPASSSLEDCYTAGSNPPSTAVDPPHDDSEEESEYYRPHVPPRPPWSTGGGGQID*

Homology

[Close]

BLAST of Chy3G052700 vs. ExPASy TrEMBL
Match: A0A0A0KBZ4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G020160 PE=4 SV=1)

HSP 1 Score: 226.5 bits (576), Expect = 5.5e-56
Identity = 107/109 (98.17%), Postives = 109/109 (100.00%), Query Frame = 0


Query: 1   MQGSTEKSKKQNDNESDLHPIPHCSIILTIFDSILQPFISILRFFGFKRDAPPYRPASSS 60
           M+GSTEKSKKQ+DNESDLHPIPHCSIILTIFDSILQPFISILRFFGFKRDAPPYRPASSS
Sbjct: 1   MKGSTEKSKKQDDNESDLHPIPHCSIILTIFDSILQPFISILRFFGFKRDAPPYRPASSS 60

Query: 61  LEDCYTAGSNPPSTAVDPPHDDSEEESEYYRPHVPPRPPWSTGGGGQID 110
           LEDCYTAGSNPPSTAVDPPHDDSEEESEYYRPHVPPRPPWSTGGGGQID
Sbjct: 61  LEDCYTAGSNPPSTAVDPPHDDSEEESEYYRPHVPPRPPWSTGGGGQID 109

[Close]

BLAST of Chy3G052700 vs. ExPASy TrEMBL
Match: A0A5D3D4J4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold607G00380 PE=4 SV=1)

HSP 1 Score: 211.5 bits (537), Expect = 1.8e-51
Identity = 101/108 (93.52%), Postives = 104/108 (96.30%), Query Frame = 0


Query: 1   MQGSTEKSKKQNDNESDLHPIPHCSIILTIFDSILQPFISILRFFGFKRDAPPYRPASSS 60
           M+ STEKSKKQ DNESDLHPIPHCSIILTIFDSILQ FI+ILRFFGFKR+APPYRPASSS
Sbjct: 1   MKDSTEKSKKQADNESDLHPIPHCSIILTIFDSILQAFIAILRFFGFKRNAPPYRPASSS 60

Query: 61  LEDCYTAGSNPPSTAVDPPHDDSEEESEYYRPHVPPRPPWSTGGGGQI 109
           LEDCYTAGSNPPSTAVDPPHDDSEEESEYYRPHVPP PPWSTGGGGQI
Sbjct: 61  LEDCYTAGSNPPSTAVDPPHDDSEEESEYYRPHVPPPPPWSTGGGGQI 108

[Close]

BLAST of Chy3G052700 vs. ExPASy TrEMBL
Match: A0A1S3CLD8 (uncharacterized protein LOC103502256 OS=Cucumis melo OX=3656 GN=LOC103502256 PE=4 SV=1)

HSP 1 Score: 211.5 bits (537), Expect = 1.8e-51
Identity = 101/108 (93.52%), Postives = 104/108 (96.30%), Query Frame = 0


Query: 1   MQGSTEKSKKQNDNESDLHPIPHCSIILTIFDSILQPFISILRFFGFKRDAPPYRPASSS 60
           M+ STEKSKKQ DNESDLHPIPHCSIILTIFDSILQ FI+ILRFFGFKR+APPYRPASSS
Sbjct: 40  MKDSTEKSKKQADNESDLHPIPHCSIILTIFDSILQAFIAILRFFGFKRNAPPYRPASSS 99

Query: 61  LEDCYTAGSNPPSTAVDPPHDDSEEESEYYRPHVPPRPPWSTGGGGQI 109
           LEDCYTAGSNPPSTAVDPPHDDSEEESEYYRPHVPP PPWSTGGGGQI
Sbjct: 100 LEDCYTAGSNPPSTAVDPPHDDSEEESEYYRPHVPPPPPWSTGGGGQI 147

[Close]

BLAST of Chy3G052700 vs. ExPASy TrEMBL
Match: A0A5A7T6U0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold607G00390 PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 4.6e-10
Identity = 46/108 (42.59%), Postives = 62/108 (57.41%), Query Frame = 0


Query: 1   MQGSTEKSKKQNDNESDLHPIPHCSIILTIFDSILQPFISILRFFGFKRDAPPYRPASSS 60
           ++ S E +K+ ND+   +H   HC   L+IF+ + Q  ++  RF GF+     +RP  SS
Sbjct: 14  IENSNENTKELNDDV--VH--DHCPFFLSIFNLVFQITMAFYRFLGFR----VHRPILSS 73

Query: 61  LEDCYTAGSNPPSTAVDPP-HDDSEEESEYYRPHVPPRPPWSTGGGGQ 108
            ED Y   S PP T VDPP  D  EEE E+ R + PP PP S GGGG+
Sbjct: 74  SEDSYPVDSQPPPTTVDPPIEDPGEEEREFARRNPPPPPPPSNGGGGR 113

[Close]

BLAST of Chy3G052700 vs. ExPASy TrEMBL
Match: A0A1S3CMT1 (uncharacterized protein LOC103502255 OS=Cucumis melo OX=3656 GN=LOC103502255 PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 4.6e-10
Identity = 46/108 (42.59%), Postives = 62/108 (57.41%), Query Frame = 0


Query: 1   MQGSTEKSKKQNDNESDLHPIPHCSIILTIFDSILQPFISILRFFGFKRDAPPYRPASSS 60
           ++ S E +K+ ND+   +H   HC   L+IF+ + Q  ++  RF GF+     +RP  SS
Sbjct: 14  IENSNENTKELNDDV--VH--DHCPFFLSIFNLVFQITMAFYRFLGFR----VHRPILSS 73

Query: 61  LEDCYTAGSNPPSTAVDPP-HDDSEEESEYYRPHVPPRPPWSTGGGGQ 108
            ED Y   S PP T VDPP  D  EEE E+ R + PP PP S GGGG+
Sbjct: 74  SEDSYPVDSQPPPTTVDPPIEDPGEEEREFARRNPPPPPPPSNGGGGR 113

[Close]

BLAST of Chy3G052700 vs. NCBI nr
Match: XP_004138360.2 (uncharacterized protein LOC101208454 [Cucumis sativus] >KAE8646592.1 hypothetical protein Csa_005099 [Cucumis sativus])

HSP 1 Score: 227 bits (579), Expect = 1.11e-74
Identity = 107/109 (98.17%), Postives = 109/109 (100.00%), Query Frame = 0


Query: 1   MQGSTEKSKKQNDNESDLHPIPHCSIILTIFDSILQPFISILRFFGFKRDAPPYRPASSS 60
           M+GSTEKSKKQ+DNESDLHPIPHCSIILTIFDSILQPFISILRFFGFKRDAPPYRPASSS
Sbjct: 30  MKGSTEKSKKQDDNESDLHPIPHCSIILTIFDSILQPFISILRFFGFKRDAPPYRPASSS 89

Query: 61  LEDCYTAGSNPPSTAVDPPHDDSEEESEYYRPHVPPRPPWSTGGGGQID 109
           LEDCYTAGSNPPSTAVDPPHDDSEEESEYYRPHVPPRPPWSTGGGGQID
Sbjct: 90  LEDCYTAGSNPPSTAVDPPHDDSEEESEYYRPHVPPRPPWSTGGGGQID 138

[Close]

BLAST of Chy3G052700 vs. NCBI nr
Match: KAA0039201.1 (uncharacterized protein E6C27_scaffold121G001180 [Cucumis melo var. makuwa] >TYK18468.1 uncharacterized protein E5676_scaffold607G00380 [Cucumis melo var. makuwa])

HSP 1 Score: 212 bits (539), Expect = 5.40e-69
Identity = 101/108 (93.52%), Postives = 104/108 (96.30%), Query Frame = 0


Query: 1   MQGSTEKSKKQNDNESDLHPIPHCSIILTIFDSILQPFISILRFFGFKRDAPPYRPASSS 60
           M+ STEKSKKQ DNESDLHPIPHCSIILTIFDSILQ FI+ILRFFGFKR+APPYRPASSS
Sbjct: 1   MKDSTEKSKKQADNESDLHPIPHCSIILTIFDSILQAFIAILRFFGFKRNAPPYRPASSS 60

Query: 61  LEDCYTAGSNPPSTAVDPPHDDSEEESEYYRPHVPPRPPWSTGGGGQI 108
           LEDCYTAGSNPPSTAVDPPHDDSEEESEYYRPHVPP PPWSTGGGGQI
Sbjct: 61  LEDCYTAGSNPPSTAVDPPHDDSEEESEYYRPHVPPPPPWSTGGGGQI 108

[Close]

BLAST of Chy3G052700 vs. NCBI nr
Match: XP_008464348.1 (PREDICTED: uncharacterized protein LOC103502256 [Cucumis melo])

HSP 1 Score: 212 bits (539), Expect = 1.93e-68
Identity = 101/108 (93.52%), Postives = 104/108 (96.30%), Query Frame = 0


Query: 1   MQGSTEKSKKQNDNESDLHPIPHCSIILTIFDSILQPFISILRFFGFKRDAPPYRPASSS 60
           M+ STEKSKKQ DNESDLHPIPHCSIILTIFDSILQ FI+ILRFFGFKR+APPYRPASSS
Sbjct: 40  MKDSTEKSKKQADNESDLHPIPHCSIILTIFDSILQAFIAILRFFGFKRNAPPYRPASSS 99

Query: 61  LEDCYTAGSNPPSTAVDPPHDDSEEESEYYRPHVPPRPPWSTGGGGQI 108
           LEDCYTAGSNPPSTAVDPPHDDSEEESEYYRPHVPP PPWSTGGGGQI
Sbjct: 100 LEDCYTAGSNPPSTAVDPPHDDSEEESEYYRPHVPPPPPWSTGGGGQI 147

[Close]

BLAST of Chy3G052700 vs. NCBI nr
Match: XP_038886557.1 (uncharacterized protein LOC120076731 [Benincasa hispida])

HSP 1 Score: 157 bits (396), Expect = 3.35e-47
Identity = 79/108 (73.15%), Postives = 87/108 (80.56%), Query Frame = 0


Query: 4   STEKSKKQ--NDNESDLHPIPHCSIILTIFDSILQPFISILRFFGFKRDAPPYRPASSSL 63
           S EKSKKQ  +D+E+DLH   HC I L I DSILQ FI+ILRF GF  + PPYRPA SS 
Sbjct: 3   SIEKSKKQVDDDDETDLHS--HCPIFLIICDSILQAFIAILRFLGFNHNGPPYRPAPSSP 62

Query: 64  EDCYTAGSNPPSTAVDPPHDDSEEESEYYRPHVPPRPPWSTGGGGQID 109
           EDCYT GS+PPSTAV+PP D+SEEESEYYRPHVPP PPWSTGGGGQ D
Sbjct: 63  EDCYTDGSDPPSTAVNPPDDESEEESEYYRPHVPPPPPWSTGGGGQTD 108

[Close]

BLAST of Chy3G052700 vs. NCBI nr
Match: XP_008464347.1 (PREDICTED: uncharacterized protein LOC103502255 [Cucumis melo] >KAA0039202.1 uncharacterized protein E6C27_scaffold121G001200 [Cucumis melo var. makuwa] >TYK18469.1 uncharacterized protein E5676_scaffold607G00390 [Cucumis melo var. makuwa])

HSP 1 Score: 75.9 bits (185), Expect = 4.65e-15
Identity = 46/110 (41.82%), Postives = 64/110 (58.18%), Query Frame = 0


Query: 1   MQGSTEKSKKQNDNESDLHPIPHCSIILTIFDSILQPFISILRFFGFKRDAPPYRPASSS 60
           ++ S E +K+ ND+   +H   HC   L+IF+ + Q  ++  RF GF+     +RP  SS
Sbjct: 14  IENSNENTKELNDDV--VHD--HCPFFLSIFNLVFQITMAFYRFLGFRV----HRPILSS 73

Query: 61  LEDCYTAGSNPPSTAVDPPHDD-SEEESEYYRPHVPPRPPWSTGGGGQID 109
            ED Y   S PP T VDPP +D  EEE E+ R + PP PP S GGGG+ +
Sbjct: 74  SEDSYPVDSQPPPTTVDPPIEDPGEEEREFARRNPPPPPPPSNGGGGRTN 115

The following BLAST results are available for this feature:

BLAST of Chy3G052700 vs.


Match Name	E-value	Identity	Description

BLAST of Chy3G052700 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KBZ4	5.5e-56	98.17	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G020160 PE=4 SV=1	[more]
A0A5D3D4J4	1.8e-51	93.52	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3CLD8	1.8e-51	93.52	uncharacterized protein LOC103502256 OS=Cucumis melo OX=3656 GN=LOC103502256 PE=...	[more]
A0A5A7T6U0	4.6e-10	42.59	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3CMT1	4.6e-10	42.59	uncharacterized protein LOC103502255 OS=Cucumis melo OX=3656 GN=LOC103502255 PE=...	[more]

BLAST of Chy3G052700 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004138360.2	1.11e-74	98.17	uncharacterized protein LOC101208454 [Cucumis sativus] >KAE8646592.1 hypothetica...	[more]
KAA0039201.1	5.40e-69	93.52	uncharacterized protein E6C27_scaffold121G001180 [Cucumis melo var. makuwa] >TYK...	[more]
XP_008464348.1	1.93e-68	93.52	PREDICTED: uncharacterized protein LOC103502256 [Cucumis melo]	[more]
XP_038886557.1	3.35e-47	73.15	uncharacterized protein LOC120076731 [Benincasa hispida]	[more]
XP_008464347.1	4.65e-15	41.82	PREDICTED: uncharacterized protein LOC103502255 [Cucumis melo] >KAA0039202.1 unc...	[more]

BLAST of Chy3G052700 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..20
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 78..92
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 55..109

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy3G052700.1	Chy3G052700.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane