Chy3G052070 (gene) Cucumber (hystrix) v1

Overview


Name	Chy3G052070
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	RING-H2 finger protein ATL74-like
Location	chrH03: 2130011 .. 2130584 (+)
RNA-Seq Expression	Chy3G052070
Synteny	Chy3G052070

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACGATGGAGTCCAATCACCACCGTCCGCGTCCCCACCGCCTCCTCCTCGACGCCGACACCACGGCATCACCGTCAAATGGAAGCAGAACGCGAAATTCATATAACAACGAAGCCAATTTCGATACAAACATGGTGATAATTCTTGCCGCGTTACTCTGCGCACTGATTTGCGCTCTAGGATTGAACTCAATCGTCCGGTGCGCCCTCCGCTGCAGCCGACGGTTCGCCTTCGAAACAGGCGGCGGCACAGCCTCGCGTCTCACCGCTACAGGGCTAAAGAAAAGCGCATTACGCCAAATTCCGGTCGCCGTCTATGGGTCGGAAACAGGCCTAGAGATCCGAGAAACGGATTGCCCTATCTGCCTAGGAGATTTCATGGCCGGGGAGAAAATAAAAATACTCCCGAAATGTAACCACGGATTTCACGTTCGATGTATCGATACCTGGTTAGCTTCCCACTCATCGTGTCCGACATGTCGTCAATCACTTCTGGAACAACAATCCGTTTCGGAATCGGCGGAAGCTGAGACGGTTAACCGAGGCGCCGGCAATTCATCGGCTAGCGGGCAAG

mRNA sequence

ATGACGATGGAGTCCAATCACCACCGTCCGCGTCCCCACCGCCTCCTCCTCGACGCCGACACCACGGCATCACCGTCAAATGGAAGCAGAACGCGAAATTCATATAACAACGAAGCCAATTTCGATACAAACATGGTGATAATTCTTGCCGCGTTACTCTGCGCACTGATTTGCGCTCTAGGATTGAACTCAATCGTCCGGTGCGCCCTCCGCTGCAGCCGACGGTTCGCCTTCGAAACAGGCGGCGGCACAGCCTCGCGTCTCACCGCTACAGGGCTAAAGAAAAGCGCATTACGCCAAATTCCGGTCGCCGTCTATGGGTCGGAAACAGGCCTAGAGATCCGAGAAACGGATTGCCCTATCTGCCTAGGAGATTTCATGGCCGGGGAGAAAATAAAAATACTCCCGAAATGTAACCACGGATTTCACGTTCGATGTATCGATACCTGGTTAGCTTCCCACTCATCGTGTCCGACATGTCGTCAATCACTTCTGGAACAACAATCCGTTTCGGAATCGGCGGAAGCTGAGACGGTTAACCGAGGCGCCGGCAATTCATCGGCTAGCGGGCAAG

Coding sequence (CDS)

ATGACGATGGAGTCCAATCACCACCGTCCGCGTCCCCACCGCCTCCTCCTCGACGCCGACACCACGGCATCACCGTCAAATGGAAGCAGAACGCGAAATTCATATAACAACGAAGCCAATTTCGATACAAACATGGTGATAATTCTTGCCGCGTTACTCTGCGCACTGATTTGCGCTCTAGGATTGAACTCAATCGTCCGGTGCGCCCTCCGCTGCAGCCGACGGTTCGCCTTCGAAACAGGCGGCGGCACAGCCTCGCGTCTCACCGCTACAGGGCTAAAGAAAAGCGCATTACGCCAAATTCCGGTCGCCGTCTATGGGTCGGAAACAGGCCTAGAGATCCGAGAAACGGATTGCCCTATCTGCCTAGGAGATTTCATGGCCGGGGAGAAAATAAAAATACTCCCGAAATGTAACCACGGATTTCACGTTCGATGTATCGATACCTGGTTAGCTTCCCACTCATCGTGTCCGACATGTCGTCAATCACTTCTGGAACAACAATCCGTTTCGGAATCGGCGGAAGCTGAGACGGTTAACCGAGGCGCCGGCAATTCATCGGCTAGCGGGCAAG

Protein sequence

MTMESNHHRPRPHRLLLDADTTASPSNGSRTRNSYNNEANFDTNMVIILAALLCALICALGLNSIVRCALRCSRRFAFETGGGTASRLTATGLKKSALRQIPVAVYGSETGLEIRETDCPICLGDFMAGEKIKILPKCNHGFHVRCIDTWLASHSSCPTCRQSLLEQQSVSESAEAETVNRGAGNSSASGQX

Homology

[Close]

BLAST of Chy3G052070 vs. ExPASy Swiss-Prot
Match: Q9SG96 (RING-H2 finger protein ATL72 OS=Arabidopsis thaliana OX=3702 GN=ATL72 PE=2 SV=1)

HSP 1 Score: 179.5 bits (454), Expect = 3.6e-44
Identity = 96/163 (58.90%), Postives = 114/163 (69.94%), Query Frame = 0


Query: 14  RLLLDADTTASPSNGSRTRNSYNNEANFDTNMVIILAALLCALICALGLNSIVRCALRCS 73
           RLLL+    A P+N +       N+  FDTNMVIILAALLCALICAL LNS +RC LR +
Sbjct: 3   RLLLEPQANA-PANANPKPKGGINDTYFDTNMVIILAALLCALICALSLNSALRCVLRIT 62

Query: 74  RRFAFETGGGTASR--------LTATGLKKSALRQIPVAVYGSETGLEIRETDCPICLGD 133
           RRF  +     AS           ATGLKK AL+QIPV +YGS   ++++ T+C ICLGD
Sbjct: 63  RRFTSDDQVSNASNANANLGRLAAATGLKKQALKQIPVGLYGSGI-IDMKATECLICLGD 122

Query: 134 FMAGEKIKILPKCNHGFHVRCIDTWLASHSSCPTCRQSLLEQQ 169
           F  GEK+++LPKCNHGFHVRCIDTWL S SSCPTCRQSLL +Q
Sbjct: 123 FEDGEKVRVLPKCNHGFHVRCIDTWLLSRSSCPTCRQSLLLEQ 163

[Close]

BLAST of Chy3G052070 vs. ExPASy Swiss-Prot
Match: Q9FLC6 (RING-H2 finger protein ATL73 OS=Arabidopsis thaliana OX=3702 GN=ATL73 PE=2 SV=1)

HSP 1 Score: 175.3 bits (443), Expect = 6.9e-43
Identity = 87/149 (58.39%), Postives = 110/149 (73.83%), Query Frame = 0


Query: 21  TTASPSNGSRTRNSYNNEANFDTNMVIILAALLCALICALGLNSIVRCALRCSRRFAFET 80
           T A+P     + ++  N A+ DT+MVIILAALLCALICALG+NS++RC LRC+RRF    
Sbjct: 17  TDANPRTLGDSVSNNKNIASMDTHMVIILAALLCALICALGINSVLRCVLRCTRRFTPNE 76

Query: 81  GGGTASRLTATGLKKSALRQIPVAVYGSETGLEIRETDCPICLGDFMAGEKIKILPKCNH 140
                +   A G+KK AL+ IPV  Y  E  L+++ T+C ICLGDF+ GE +++LPKCNH
Sbjct: 77  DPVDTNANVAKGIKKRALKVIPVDSYSPE--LKMKATECLICLGDFVEGETVRVLPKCNH 136

Query: 141 GFHVRCIDTWLASHSSCPTCRQSLLEQQS 170
           GFHV+CIDTWL SHSSCPTCRQSLLE Q+
Sbjct: 137 GFHVKCIDTWLLSHSSCPTCRQSLLEHQT 163

[Close]

BLAST of Chy3G052070 vs. ExPASy Swiss-Prot
Match: Q9LZV8 (RING-H2 finger protein ATL74 OS=Arabidopsis thaliana OX=3702 GN=ATL74 PE=2 SV=1)

HSP 1 Score: 169.1 bits (427), Expect = 4.9e-41
Identity = 84/154 (54.55%), Postives = 107/154 (69.48%), Query Frame = 0


Query: 13  HRLLLDADTTASPSNGSRTRNSYNNEANFDTNMVIILAALLCALICALGLNSIVRCALRC 72
           HRLLL++    + ++GS   + Y  + NFD NMVIILAALLCALI ALGLNSI+RCA+RC
Sbjct: 2   HRLLLESHGGGNETSGSGGGDGYTRDMNFDANMVIILAALLCALILALGLNSILRCAMRC 61

Query: 73  SRRFAFETGGGTASRLTATGLKKSALRQIPVAVYGSETGLEIRETDCPICLGDFMAGEKI 132
               +     GT +     GLKK  L++ PVA YGS   ++I  T+C ICLG+F  GE++
Sbjct: 62  GFGLSSSAAAGTVA--DRAGLKKRELKKFPVAEYGSGE-VKIAATECAICLGEFADGERV 121

Query: 133 KILPKCNHGFHVRCIDTWLASHSSCPTCRQSLLE 167
           ++LP CNH FH+ CIDTWL SHSSCP CR SL+E
Sbjct: 122 RVLPPCNHSFHMSCIDTWLVSHSSCPNCRHSLIE 152

[Close]

BLAST of Chy3G052070 vs. ExPASy Swiss-Prot
Match: Q6NQG7 (RING-H2 finger protein ATL78 OS=Arabidopsis thaliana OX=3702 GN=ATL78 PE=2 SV=1)

HSP 1 Score: 159.1 bits (401), Expect = 5.1e-38
Identity = 78/165 (47.27%), Postives = 110/165 (66.67%), Query Frame = 0


Query: 18  DADTTASPSNGSRTRNSYNNEANFDTNMVIILAALLCALICALGLNSIVRCALRCSRRFA 77
           D   T +PS        Y  + NFD N+V++L+ LLCAL+C+LGLNSI+RCALRCS    
Sbjct: 36  DQSPTPAPS-------PYVGDNNFDANVVMVLSVLLCALVCSLGLNSIIRCALRCSNLVP 95

Query: 78  FETGGGT-ASRLTATGLKKSALRQIPVAVYGSETGLEIRETDCPICLGDFMAGEKIKILP 137
            E GG     RLT TG+K+ AL+      Y +E  L   +T+C ICL +F+A E++K+LP
Sbjct: 96  SEAGGDNYPVRLTNTGVKRKALKSFQTVSYSTELNLPGLDTECAICLSEFVAEERVKLLP 155

Query: 138 KCNHGFHVRCIDTWLASHSSCPTCRQSLLEQ-QSVSESAEAETVN 181
            C+HGFHVRCID WL+SHSSCPTCR  L++  + +++ ++  ++N
Sbjct: 156 TCHHGFHVRCIDKWLSSHSSCPTCRHCLIQTCEKIADCSQTSSLN 193

[Close]

BLAST of Chy3G052070 vs. ExPASy Swiss-Prot
Match: P0C034 (RING-H2 finger protein ATL10 OS=Arabidopsis thaliana OX=3702 GN=ATL10 PE=2 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 1.8e-30
Identity = 66/148 (44.59%), Postives = 96/148 (64.86%), Query Frame = 0


Query: 37  NEANFDTNMVIILAALLCALICALGLNSIVRCALRCSRRFAFETGGGTASRLTAT---GL 96
           +E N   N++++L+ L+C +IC LGL+ I+RCALR S RF       + S    +   G+
Sbjct: 50  HENNLSGNVMMLLSILICGIICCLGLHYIIRCALRRSTRFMISEPVPSLSSTRGSSNKGI 109

Query: 97  KKSALRQIPVAVYGSETGLEIRETDCPICLGDFMAGEKIKILPKCNHGFHVRCIDTWLAS 156
           KK ALR  PV  Y  E  L   + +C ICL DF++GE++++LPKCNHGFHVRCID WL  
Sbjct: 110 KKKALRMFPVVSYSPEMNLPGLDEECVICLSDFVSGEQLRLLPKCNHGFHVRCIDKWLQQ 169

Query: 157 HSSCPTCRQSLLE--QQSVSESAEAETV 180
           H +CP CR  L+E  Q+ + + ++A++V
Sbjct: 170 HLTCPKCRNCLVETCQKILGDFSQADSV 197

[Close]

BLAST of Chy3G052070 vs. ExPASy TrEMBL
Match: A0A0A0KAH2 (RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G014550 PE=4 SV=1)

HSP 1 Score: 360.1 bits (923), Expect = 5.6e-96
Identity = 183/191 (95.81%), Postives = 183/191 (95.81%), Query Frame = 0


Query: 1   MTMESNHHRPRPHRLLLDADTTASPSNGSRTRNSYNNEANFDTNMVIILAALLCALICAL 60
           M MESNHHRPRP RLLLD DTTA PSNGSRTRNSYNNEANFDTNMVIILAALLCALICAL
Sbjct: 1   MRMESNHHRPRPPRLLLDPDTTAPPSNGSRTRNSYNNEANFDTNMVIILAALLCALICAL 60

Query: 61  GLNSIVRCALRCSRRFAFETGGGTASRLTATGLKKSALRQIPVAVYGSETGLEIRETDCP 120
           GLNSIVRCALRCSRRFAFETGGGTASRLTATGLKKSALRQIPVAVYGSETGLEIRETDCP
Sbjct: 61  GLNSIVRCALRCSRRFAFETGGGTASRLTATGLKKSALRQIPVAVYGSETGLEIRETDCP 120

Query: 121 ICLGDFMAGEKIKILPKCNHGFHVRCIDTWLASHSSCPTCRQSLLEQQSVSESAEAETVN 180
           ICLGDFMAGEKIKILPKCNHGFHVRCIDTWLASHSSCPTCRQSLLEQQSVSESA  E  N
Sbjct: 121 ICLGDFMAGEKIKILPKCNHGFHVRCIDTWLASHSSCPTCRQSLLEQQSVSESAVTEAGN 180

Query: 181 RGAGNSSASGQ 192
           RGAGNSSASGQ
Sbjct: 181 RGAGNSSASGQ 191

[Close]

BLAST of Chy3G052070 vs. ExPASy TrEMBL
Match: A0A5D3BXT6 (RING-H2 finger protein ATL72 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold409G001810 PE=4 SV=1)

HSP 1 Score: 355.9 bits (912), Expect = 1.0e-94
Identity = 179/189 (94.71%), Postives = 184/189 (97.35%), Query Frame = 0


Query: 3   MESNHHRPRPHRLLLDADTTASPSNGSRTRNSYNNEANFDTNMVIILAALLCALICALGL 62
           MESNHHRPR HRLLLDADTTA+PSNGSRTRNSYNNEANFDTNMVIILAALLCALICALGL
Sbjct: 1   MESNHHRPRSHRLLLDADTTAAPSNGSRTRNSYNNEANFDTNMVIILAALLCALICALGL 60

Query: 63  NSIVRCALRCSRRFAFETGGGTASRLTATGLKKSALRQIPVAVYGSETGLEIRETDCPIC 122
           NSIVRCALRCSRRFAFETGGGTASRLTA+GLKKSALRQIPVAVYGSETGLEIRETDCPIC
Sbjct: 61  NSIVRCALRCSRRFAFETGGGTASRLTASGLKKSALRQIPVAVYGSETGLEIRETDCPIC 120

Query: 123 LGDFMAGEKIKILPKCNHGFHVRCIDTWLASHSSCPTCRQSLLEQQSVSESAEAETVNRG 182
           LGDF+AGEKIK+LPKCNHGFHVRCIDTWLASHSSCPTCRQSL+EQQSVSESA AE  NR 
Sbjct: 121 LGDFIAGEKIKVLPKCNHGFHVRCIDTWLASHSSCPTCRQSLVEQQSVSESAGAEAGNRP 180

Query: 183 AGNSSASGQ 192
           AGNSSASGQ
Sbjct: 181 AGNSSASGQ 189

[Close]

BLAST of Chy3G052070 vs. ExPASy TrEMBL
Match: A0A6J1FF16 (RING-H2 finger protein ATL74-like OS=Cucurbita moschata OX=3662 GN=LOC111444892 PE=4 SV=1)

HSP 1 Score: 337.0 bits (863), Expect = 5.0e-89
Identity = 167/191 (87.43%), Postives = 177/191 (92.67%), Query Frame = 0


Query: 1   MTMESNHHRPRPHRLLLDADTTASPSNGSRTRNSYNNEANFDTNMVIILAALLCALICAL 60
           M M S+HHRPRPHRLLLDA+TT +PSNGSRTRNSY NEANFDTNMVIILAALLCALICAL
Sbjct: 1   MAMVSDHHRPRPHRLLLDANTTEAPSNGSRTRNSYTNEANFDTNMVIILAALLCALICAL 60

Query: 61  GLNSIVRCALRCSRRFAFETGGGTASRLTATGLKKSALRQIPVAVYGSETGLEIRETDCP 120
           GLNSIVRCA RCSRRF+FETGGGTASRL ATGLKKSALR++PV VYGSE+GL IRETDCP
Sbjct: 61  GLNSIVRCAFRCSRRFSFETGGGTASRLAATGLKKSALRKLPVTVYGSESGLGIRETDCP 120

Query: 121 ICLGDFMAGEKIKILPKCNHGFHVRCIDTWLASHSSCPTCRQSLLEQQSVSESAEAETVN 180
           ICLGDF+AGEKIK+LPKCNHGFHVRCIDTWLASHSSCPTCRQSL EQQS SES EA+  N
Sbjct: 121 ICLGDFIAGEKIKVLPKCNHGFHVRCIDTWLASHSSCPTCRQSLFEQQSASESTEADAGN 180

Query: 181 RGAGNSSASGQ 192
           R AGNSSASGQ
Sbjct: 181 RPAGNSSASGQ 191

[Close]

BLAST of Chy3G052070 vs. ExPASy TrEMBL
Match: A0A6J1JVF4 (RING-H2 finger protein ATL74-like OS=Cucurbita maxima OX=3661 GN=LOC111489233 PE=4 SV=1)

HSP 1 Score: 336.7 bits (862), Expect = 6.6e-89
Identity = 167/191 (87.43%), Postives = 177/191 (92.67%), Query Frame = 0


Query: 1   MTMESNHHRPRPHRLLLDADTTASPSNGSRTRNSYNNEANFDTNMVIILAALLCALICAL 60
           M M S+HHRPRPHRLLLDA+TT +PSNGSRTRNSY NEANFDTNMVIILAALLCALICAL
Sbjct: 1   MAMVSDHHRPRPHRLLLDANTTEAPSNGSRTRNSYTNEANFDTNMVIILAALLCALICAL 60

Query: 61  GLNSIVRCALRCSRRFAFETGGGTASRLTATGLKKSALRQIPVAVYGSETGLEIRETDCP 120
           GLNSIVRCALRCSRRF+FETGGGTASRL ATGLKKSALR++PV VYGSE+GL IRETDCP
Sbjct: 61  GLNSIVRCALRCSRRFSFETGGGTASRLAATGLKKSALRKLPVTVYGSESGLGIRETDCP 120

Query: 121 ICLGDFMAGEKIKILPKCNHGFHVRCIDTWLASHSSCPTCRQSLLEQQSVSESAEAETVN 180
           ICLGDF+AGEKIK+LPKCNHGFHVRCIDTWLASHSSCPTCRQSL EQQS SES EA+  N
Sbjct: 121 ICLGDFIAGEKIKVLPKCNHGFHVRCIDTWLASHSSCPTCRQSLFEQQSASESTEADAGN 180

Query: 181 RGAGNSSASGQ 192
           R AGN SASGQ
Sbjct: 181 RPAGNPSASGQ 191

[Close]

BLAST of Chy3G052070 vs. ExPASy TrEMBL
Match: A0A6J1BZW4 (RING-H2 finger protein ATL74 OS=Momordica charantia OX=3673 GN=LOC111006761 PE=4 SV=1)

HSP 1 Score: 330.5 bits (846), Expect = 4.7e-87
Identity = 166/191 (86.91%), Postives = 175/191 (91.62%), Query Frame = 0


Query: 1   MTMESNHHRPRPHRLLLDADTTASPSNGSRTRNSYNNEANFDTNMVIILAALLCALICAL 60
           M M S+HHR RPHR LLD D TA PSNG+RTR+SY+NEANFDTNMVIILAALLCALICAL
Sbjct: 1   MAMASDHHRHRPHRFLLDGDATAPPSNGNRTRSSYSNEANFDTNMVIILAALLCALICAL 60

Query: 61  GLNSIVRCALRCSRRFAFETGGGTASRLTATGLKKSALRQIPVAVYGSETGLEIRETDCP 120
           GLNSIVRCALRCSRRFAFET GGT++RL ATGLKKSALRQIPVAVYGSE+GLEIRETDCP
Sbjct: 61  GLNSIVRCALRCSRRFAFETAGGTSTRLAATGLKKSALRQIPVAVYGSESGLEIRETDCP 120

Query: 121 ICLGDFMAGEKIKILPKCNHGFHVRCIDTWLASHSSCPTCRQSLLEQQSVSESAEAETVN 180
           ICLGDF+AGEKIK+LPKCNH FHVRCIDTWLASHSSCPTCRQSLLEQQS SESA AE  N
Sbjct: 121 ICLGDFIAGEKIKVLPKCNHEFHVRCIDTWLASHSSCPTCRQSLLEQQSCSESAVAEAGN 180

Query: 181 RGAGNSSASGQ 192
           R AGNSSA GQ
Sbjct: 181 RPAGNSSAGGQ 191

[Close]

BLAST of Chy3G052070 vs. NCBI nr
Match: XP_011656436.1 (RING-H2 finger protein ATL72 [Cucumis sativus] >KAE8646578.1 hypothetical protein Csa_005410 [Cucumis sativus])

HSP 1 Score: 360 bits (925), Expect = 8.63e-125
Identity = 183/191 (95.81%), Postives = 183/191 (95.81%), Query Frame = 0


Query: 1   MTMESNHHRPRPHRLLLDADTTASPSNGSRTRNSYNNEANFDTNMVIILAALLCALICAL 60
           M MESNHHRPRP RLLLD DTTA PSNGSRTRNSYNNEANFDTNMVIILAALLCALICAL
Sbjct: 1   MRMESNHHRPRPPRLLLDPDTTAPPSNGSRTRNSYNNEANFDTNMVIILAALLCALICAL 60

Query: 61  GLNSIVRCALRCSRRFAFETGGGTASRLTATGLKKSALRQIPVAVYGSETGLEIRETDCP 120
           GLNSIVRCALRCSRRFAFETGGGTASRLTATGLKKSALRQIPVAVYGSETGLEIRETDCP
Sbjct: 61  GLNSIVRCALRCSRRFAFETGGGTASRLTATGLKKSALRQIPVAVYGSETGLEIRETDCP 120

Query: 121 ICLGDFMAGEKIKILPKCNHGFHVRCIDTWLASHSSCPTCRQSLLEQQSVSESAEAETVN 180
           ICLGDFMAGEKIKILPKCNHGFHVRCIDTWLASHSSCPTCRQSLLEQQSVSESA  E  N
Sbjct: 121 ICLGDFMAGEKIKILPKCNHGFHVRCIDTWLASHSSCPTCRQSLLEQQSVSESAVTEAGN 180

Query: 181 RGAGNSSASGQ 191
           RGAGNSSASGQ
Sbjct: 181 RGAGNSSASGQ 191

[Close]

BLAST of Chy3G052070 vs. NCBI nr
Match: KAA0052006.1 (RING-H2 finger protein ATL72 [Cucumis melo var. makuwa] >TYK04553.1 RING-H2 finger protein ATL72 [Cucumis melo var. makuwa])

HSP 1 Score: 356 bits (914), Expect = 2.25e-123
Identity = 179/189 (94.71%), Postives = 184/189 (97.35%), Query Frame = 0


Query: 3   MESNHHRPRPHRLLLDADTTASPSNGSRTRNSYNNEANFDTNMVIILAALLCALICALGL 62
           MESNHHRPR HRLLLDADTTA+PSNGSRTRNSYNNEANFDTNMVIILAALLCALICALGL
Sbjct: 1   MESNHHRPRSHRLLLDADTTAAPSNGSRTRNSYNNEANFDTNMVIILAALLCALICALGL 60

Query: 63  NSIVRCALRCSRRFAFETGGGTASRLTATGLKKSALRQIPVAVYGSETGLEIRETDCPIC 122
           NSIVRCALRCSRRFAFETGGGTASRLTA+GLKKSALRQIPVAVYGSETGLEIRETDCPIC
Sbjct: 61  NSIVRCALRCSRRFAFETGGGTASRLTASGLKKSALRQIPVAVYGSETGLEIRETDCPIC 120

Query: 123 LGDFMAGEKIKILPKCNHGFHVRCIDTWLASHSSCPTCRQSLLEQQSVSESAEAETVNRG 182
           LGDF+AGEKIK+LPKCNHGFHVRCIDTWLASHSSCPTCRQSL+EQQSVSESA AE  NR 
Sbjct: 121 LGDFIAGEKIKVLPKCNHGFHVRCIDTWLASHSSCPTCRQSLVEQQSVSESAGAEAGNRP 180

Query: 183 AGNSSASGQ 191
           AGNSSASGQ
Sbjct: 181 AGNSSASGQ 189

[Close]

BLAST of Chy3G052070 vs. NCBI nr
Match: XP_038885444.1 (RING-H2 finger protein ATL74-like [Benincasa hispida])

HSP 1 Score: 353 bits (906), Expect = 2.58e-121
Identity = 178/191 (93.19%), Postives = 184/191 (96.34%), Query Frame = 0


Query: 1   MTMESNHHRPRPHRLLLDADTTASPSNGSRTRNSYNNEANFDTNMVIILAALLCALICAL 60
           MTMESNHHRPRPHRLLLDADTTA+PSNGSRTRNSY+NEANFDTNMVIILAALLCALI AL
Sbjct: 1   MTMESNHHRPRPHRLLLDADTTAAPSNGSRTRNSYSNEANFDTNMVIILAALLCALIFAL 60

Query: 61  GLNSIVRCALRCSRRFAFETGGGTASRLTATGLKKSALRQIPVAVYGSETGLEIRETDCP 120
           GLNSIVRCALRCSRRFAFETGGGTASRL ATGLKKSALRQIPVAVYGSE+GL+IRETDCP
Sbjct: 61  GLNSIVRCALRCSRRFAFETGGGTASRLAATGLKKSALRQIPVAVYGSESGLKIRETDCP 120

Query: 121 ICLGDFMAGEKIKILPKCNHGFHVRCIDTWLASHSSCPTCRQSLLEQQSVSESAEAETVN 180
           ICLGDF+AGEKIK+LPKCNHGFHVRCIDTWLASHSSCPTCRQSLLEQQS SESAEAE  N
Sbjct: 121 ICLGDFIAGEKIKVLPKCNHGFHVRCIDTWLASHSSCPTCRQSLLEQQSASESAEAEAGN 180

Query: 181 RGAGNSSASGQ 191
             AGNSSASGQ
Sbjct: 181 PPAGNSSASGQ 191

[Close]

BLAST of Chy3G052070 vs. NCBI nr
Match: XP_023550807.1 (RING-H2 finger protein ATL74-like [Cucurbita pepo subsp. pepo] >XP_023550808.1 RING-H2 finger protein ATL74-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 339 bits (869), Expect = 1.74e-116
Identity = 168/191 (87.96%), Postives = 178/191 (93.19%), Query Frame = 0


Query: 1   MTMESNHHRPRPHRLLLDADTTASPSNGSRTRNSYNNEANFDTNMVIILAALLCALICAL 60
           M M S+HHRPRPHRLLLDA+TT +PSNGSRTRNSY NEANFDTNMVIILAALLCALICAL
Sbjct: 1   MAMVSDHHRPRPHRLLLDANTTEAPSNGSRTRNSYTNEANFDTNMVIILAALLCALICAL 60

Query: 61  GLNSIVRCALRCSRRFAFETGGGTASRLTATGLKKSALRQIPVAVYGSETGLEIRETDCP 120
           GLNSIVRCALRCSRRF+FETGGGTASRL ATGLKKSALR++PV VYGSE+GL IRETDCP
Sbjct: 61  GLNSIVRCALRCSRRFSFETGGGTASRLAATGLKKSALRKLPVTVYGSESGLGIRETDCP 120

Query: 121 ICLGDFMAGEKIKILPKCNHGFHVRCIDTWLASHSSCPTCRQSLLEQQSVSESAEAETVN 180
           ICLGDF+AGEKIK+LPKCNHGFHVRCIDTWLASHSSCPTCRQSL EQQS SES EA+  N
Sbjct: 121 ICLGDFIAGEKIKVLPKCNHGFHVRCIDTWLASHSSCPTCRQSLFEQQSASESTEADAGN 180

Query: 181 RGAGNSSASGQ 191
           R AGNSSASGQ
Sbjct: 181 RPAGNSSASGQ 191

[Close]

BLAST of Chy3G052070 vs. NCBI nr
Match: XP_022938777.1 (RING-H2 finger protein ATL74-like [Cucurbita moschata])

HSP 1 Score: 337 bits (865), Expect = 7.09e-116
Identity = 167/191 (87.43%), Postives = 177/191 (92.67%), Query Frame = 0


Query: 1   MTMESNHHRPRPHRLLLDADTTASPSNGSRTRNSYNNEANFDTNMVIILAALLCALICAL 60
           M M S+HHRPRPHRLLLDA+TT +PSNGSRTRNSY NEANFDTNMVIILAALLCALICAL
Sbjct: 1   MAMVSDHHRPRPHRLLLDANTTEAPSNGSRTRNSYTNEANFDTNMVIILAALLCALICAL 60

Query: 61  GLNSIVRCALRCSRRFAFETGGGTASRLTATGLKKSALRQIPVAVYGSETGLEIRETDCP 120
           GLNSIVRCA RCSRRF+FETGGGTASRL ATGLKKSALR++PV VYGSE+GL IRETDCP
Sbjct: 61  GLNSIVRCAFRCSRRFSFETGGGTASRLAATGLKKSALRKLPVTVYGSESGLGIRETDCP 120

Query: 121 ICLGDFMAGEKIKILPKCNHGFHVRCIDTWLASHSSCPTCRQSLLEQQSVSESAEAETVN 180
           ICLGDF+AGEKIK+LPKCNHGFHVRCIDTWLASHSSCPTCRQSL EQQS SES EA+  N
Sbjct: 121 ICLGDFIAGEKIKVLPKCNHGFHVRCIDTWLASHSSCPTCRQSLFEQQSASESTEADAGN 180

Query: 181 RGAGNSSASGQ 191
           R AGNSSASGQ
Sbjct: 181 RPAGNSSASGQ 191

[Close]

BLAST of Chy3G052070 vs. TAIR 10
Match: AT3G10910.1 (RING/U-box superfamily protein )

HSP 1 Score: 179.5 bits (454), Expect = 2.6e-45
Identity = 96/163 (58.90%), Postives = 114/163 (69.94%), Query Frame = 0


Query: 14  RLLLDADTTASPSNGSRTRNSYNNEANFDTNMVIILAALLCALICALGLNSIVRCALRCS 73
           RLLL+    A P+N +       N+  FDTNMVIILAALLCALICAL LNS +RC LR +
Sbjct: 3   RLLLEPQANA-PANANPKPKGGINDTYFDTNMVIILAALLCALICALSLNSALRCVLRIT 62

Query: 74  RRFAFETGGGTASR--------LTATGLKKSALRQIPVAVYGSETGLEIRETDCPICLGD 133
           RRF  +     AS           ATGLKK AL+QIPV +YGS   ++++ T+C ICLGD
Sbjct: 63  RRFTSDDQVSNASNANANLGRLAAATGLKKQALKQIPVGLYGSGI-IDMKATECLICLGD 122

Query: 134 FMAGEKIKILPKCNHGFHVRCIDTWLASHSSCPTCRQSLLEQQ 169
           F  GEK+++LPKCNHGFHVRCIDTWL S SSCPTCRQSLL +Q
Sbjct: 123 FEDGEKVRVLPKCNHGFHVRCIDTWLLSRSSCPTCRQSLLLEQ 163

[Close]

BLAST of Chy3G052070 vs. TAIR 10
Match: AT5G05280.1 (RING/U-box superfamily protein )

HSP 1 Score: 175.3 bits (443), Expect = 4.9e-44
Identity = 87/149 (58.39%), Postives = 110/149 (73.83%), Query Frame = 0


Query: 21  TTASPSNGSRTRNSYNNEANFDTNMVIILAALLCALICALGLNSIVRCALRCSRRFAFET 80
           T A+P     + ++  N A+ DT+MVIILAALLCALICALG+NS++RC LRC+RRF    
Sbjct: 17  TDANPRTLGDSVSNNKNIASMDTHMVIILAALLCALICALGINSVLRCVLRCTRRFTPNE 76

Query: 81  GGGTASRLTATGLKKSALRQIPVAVYGSETGLEIRETDCPICLGDFMAGEKIKILPKCNH 140
                +   A G+KK AL+ IPV  Y  E  L+++ T+C ICLGDF+ GE +++LPKCNH
Sbjct: 77  DPVDTNANVAKGIKKRALKVIPVDSYSPE--LKMKATECLICLGDFVEGETVRVLPKCNH 136

Query: 141 GFHVRCIDTWLASHSSCPTCRQSLLEQQS 170
           GFHV+CIDTWL SHSSCPTCRQSLLE Q+
Sbjct: 137 GFHVKCIDTWLLSHSSCPTCRQSLLEHQT 163

[Close]

BLAST of Chy3G052070 vs. TAIR 10
Match: AT5G01880.1 (RING/U-box superfamily protein )

HSP 1 Score: 169.1 bits (427), Expect = 3.5e-42
Identity = 84/154 (54.55%), Postives = 107/154 (69.48%), Query Frame = 0


Query: 13  HRLLLDADTTASPSNGSRTRNSYNNEANFDTNMVIILAALLCALICALGLNSIVRCALRC 72
           HRLLL++    + ++GS   + Y  + NFD NMVIILAALLCALI ALGLNSI+RCA+RC
Sbjct: 2   HRLLLESHGGGNETSGSGGGDGYTRDMNFDANMVIILAALLCALILALGLNSILRCAMRC 61

Query: 73  SRRFAFETGGGTASRLTATGLKKSALRQIPVAVYGSETGLEIRETDCPICLGDFMAGEKI 132
               +     GT +     GLKK  L++ PVA YGS   ++I  T+C ICLG+F  GE++
Sbjct: 62  GFGLSSSAAAGTVA--DRAGLKKRELKKFPVAEYGSGE-VKIAATECAICLGEFADGERV 121

Query: 133 KILPKCNHGFHVRCIDTWLASHSSCPTCRQSLLE 167
           ++LP CNH FH+ CIDTWL SHSSCP CR SL+E
Sbjct: 122 RVLPPCNHSFHMSCIDTWLVSHSSCPNCRHSLIE 152

[Close]

BLAST of Chy3G052070 vs. TAIR 10
Match: AT1G49230.1 (RING/U-box superfamily protein )

HSP 1 Score: 159.1 bits (401), Expect = 3.6e-39
Identity = 78/165 (47.27%), Postives = 110/165 (66.67%), Query Frame = 0


Query: 18  DADTTASPSNGSRTRNSYNNEANFDTNMVIILAALLCALICALGLNSIVRCALRCSRRFA 77
           D   T +PS        Y  + NFD N+V++L+ LLCAL+C+LGLNSI+RCALRCS    
Sbjct: 36  DQSPTPAPS-------PYVGDNNFDANVVMVLSVLLCALVCSLGLNSIIRCALRCSNLVP 95

Query: 78  FETGGGT-ASRLTATGLKKSALRQIPVAVYGSETGLEIRETDCPICLGDFMAGEKIKILP 137
            E GG     RLT TG+K+ AL+      Y +E  L   +T+C ICL +F+A E++K+LP
Sbjct: 96  SEAGGDNYPVRLTNTGVKRKALKSFQTVSYSTELNLPGLDTECAICLSEFVAEERVKLLP 155

Query: 138 KCNHGFHVRCIDTWLASHSSCPTCRQSLLEQ-QSVSESAEAETVN 181
            C+HGFHVRCID WL+SHSSCPTCR  L++  + +++ ++  ++N
Sbjct: 156 TCHHGFHVRCIDKWLSSHSSCPTCRHCLIQTCEKIADCSQTSSLN 193

[Close]

BLAST of Chy3G052070 vs. TAIR 10
Match: AT1G49220.1 (RING/U-box superfamily protein )

HSP 1 Score: 134.0 bits (336), Expect = 1.2e-31
Identity = 66/148 (44.59%), Postives = 96/148 (64.86%), Query Frame = 0


Query: 37  NEANFDTNMVIILAALLCALICALGLNSIVRCALRCSRRFAFETGGGTASRLTAT---GL 96
           +E N   N++++L+ L+C +IC LGL+ I+RCALR S RF       + S    +   G+
Sbjct: 50  HENNLSGNVMMLLSILICGIICCLGLHYIIRCALRRSTRFMISEPVPSLSSTRGSSNKGI 109

Query: 97  KKSALRQIPVAVYGSETGLEIRETDCPICLGDFMAGEKIKILPKCNHGFHVRCIDTWLAS 156
           KK ALR  PV  Y  E  L   + +C ICL DF++GE++++LPKCNHGFHVRCID WL  
Sbjct: 110 KKKALRMFPVVSYSPEMNLPGLDEECVICLSDFVSGEQLRLLPKCNHGFHVRCIDKWLQQ 169

Query: 157 HSSCPTCRQSLLE--QQSVSESAEAETV 180
           H +CP CR  L+E  Q+ + + ++A++V
Sbjct: 170 HLTCPKCRNCLVETCQKILGDFSQADSV 197

The following BLAST results are available for this feature:

BLAST of Chy3G052070 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SG96	3.6e-44	58.90	RING-H2 finger protein ATL72 OS=Arabidopsis thaliana OX=3702 GN=ATL72 PE=2 SV=1	[more]
Q9FLC6	6.9e-43	58.39	RING-H2 finger protein ATL73 OS=Arabidopsis thaliana OX=3702 GN=ATL73 PE=2 SV=1	[more]
Q9LZV8	4.9e-41	54.55	RING-H2 finger protein ATL74 OS=Arabidopsis thaliana OX=3702 GN=ATL74 PE=2 SV=1	[more]
Q6NQG7	5.1e-38	47.27	RING-H2 finger protein ATL78 OS=Arabidopsis thaliana OX=3702 GN=ATL78 PE=2 SV=1	[more]
P0C034	1.8e-30	44.59	RING-H2 finger protein ATL10 OS=Arabidopsis thaliana OX=3702 GN=ATL10 PE=2 SV=1	[more]

BLAST of Chy3G052070 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KAH2	5.6e-96	95.81	RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G014550 P...	[more]
A0A5D3BXT6	1.0e-94	94.71	RING-H2 finger protein ATL72 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca...	[more]
A0A6J1FF16	5.0e-89	87.43	RING-H2 finger protein ATL74-like OS=Cucurbita moschata OX=3662 GN=LOC111444892 ...	[more]
A0A6J1JVF4	6.6e-89	87.43	RING-H2 finger protein ATL74-like OS=Cucurbita maxima OX=3661 GN=LOC111489233 PE...	[more]
A0A6J1BZW4	4.7e-87	86.91	RING-H2 finger protein ATL74 OS=Momordica charantia OX=3673 GN=LOC111006761 PE=4...	[more]

BLAST of Chy3G052070 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011656436.1	8.63e-125	95.81	RING-H2 finger protein ATL72 [Cucumis sativus] >KAE8646578.1 hypothetical protei...	[more]
KAA0052006.1	2.25e-123	94.71	RING-H2 finger protein ATL72 [Cucumis melo var. makuwa] >TYK04553.1 RING-H2 fing...	[more]
XP_038885444.1	2.58e-121	93.19	RING-H2 finger protein ATL74-like [Benincasa hispida]	[more]
XP_023550807.1	1.74e-116	87.96	RING-H2 finger protein ATL74-like [Cucurbita pepo subsp. pepo] >XP_023550808.1 R...	[more]
XP_022938777.1	7.09e-116	87.43	RING-H2 finger protein ATL74-like [Cucurbita moschata]	[more]

BLAST of Chy3G052070 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G10910.1	2.6e-45	58.90	RING/U-box superfamily protein	[more]
AT5G05280.1	4.9e-44	58.39	RING/U-box superfamily protein	[more]
AT5G01880.1	3.5e-42	54.55	RING/U-box superfamily protein	[more]
AT1G49230.1	3.6e-39	47.27	RING/U-box superfamily protein	[more]
AT1G49220.1	1.2e-31	44.59	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 119..160 e-value: 1.1E-7 score: 41.5
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 118..161 e-value: 1.5E-13 score: 50.8
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 119..161 score: 12.090947
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 83..166 e-value: 1.1E-22 score: 81.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 171..191
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 20..35
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..35
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..16
None	No IPR available	PANTHER	PTHR45798	RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED	coord: 13..179
None	No IPR available	PANTHER	PTHR45798:SF44	RING-H2 FINGER PROTEIN ATL74	coord: 13..179
None	No IPR available	CDD	cd16454	RING-H2_PA-TM-RING	coord: 118..161 e-value: 9.06658E-17 score: 68.4825
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 113..168

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy3G052070.1	Chy3G052070.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane