Chy3G051960 (gene) Cucumber (hystrix) v1

Overview


Name	Chy3G051960
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	histone H4
Location	chrH03: 2028802 .. 2029463 (+)
RNA-Seq Expression	Chy3G051960
Synteny	Chy3G051960

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCCGGTCGCGGCAAGGGAGGCAAGGGTTTGGGAAAAGGAGGAGCCAAGCGTCATCGCAAAGTCTTGAGAGATAACATTCAAGGTATTACAAAACCTGCAATTCGCCGTTTGGCTCGTCGTGGCGGTGTCAAGCGAATCAGCGGTTTGATTTATGAAGAAACTAGAGGTGTTTTGAAGATCTTCCTTGAGAATGTAATCCGTGATGCTGTGACTTACACTGAGCACGCTAGGAGGAAGACGGTGACCGCCATGGATGTGGTTTATGCTTTGAAAAGGCAGGGAAGGACTTTGTATGGTTTCGGAGGTTAGGTTGTAGATTAATCGAATGGAGGATTGTAGATCTTGGCTTTAGATCTGGTTTTTCTTTCTTAGCGTTTATAATTTTTTTTTCTCTCTTTGTTTTTTTTAGGATTTCATGTACCCTAGTCTCTGTTATTCAGTAATTGAATTACTACTCGAATCATGATTCGATCTTCTCATCTTTCTCTTCCTTCAATTTGTTTCGTTCTTAGGGTTCTTATAGTTTAGTAATGTTGGGTGATTAATATTTGGTGCATTGTGTTTTGTGACTGAATAAAGATTATGAACAGGCATTGAAGCTAAAATTTGGCATAAACCAGTTGAATGTTTATGATTTGATAAATGGTTATGTTGGTTAG

mRNA sequence

ATGTCCGGTCGCGGCAAGGGAGGCAAGGGTTTGGGAAAAGGAGGAGCCAAGCGTCATCGCAAAGTCTTGAGAGATAACATTCAAGGTATTACAAAACCTGCAATTCGCCGTTTGGCTCGTCGTGGCGGTGTCAAGCGAATCAGCGATTATGAACAGGCATTGAAGCTAAAATTTGGCATAAACCAGTTGAATGTTTATGATTTGATAAATGGTTATGTTGGTTAG

Coding sequence (CDS)

ATGTCCGGTCGCGGCAAGGGAGGCAAGGGTTTGGGAAAAGGAGGAGCCAAGCGTCATCGCAAAGTCTTGAGAGATAACATTCAAGGTATTACAAAACCTGCAATTCGCCGTTTGGCTCGTCGTGGCGGTGTCAAGCGAATCAGCGATTATGAACAGGCATTGAAGCTAAAATTTGGCATAAACCAGTTGAATGTTTATGATTTGATAAATGGTTATGTTGGTTAG

Protein sequence

MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISDYEQALKLKFGINQLNVYDLINGYVG*

Homology

[Close]

BLAST of Chy3G051960 vs. ExPASy Swiss-Prot
Match: P04915 (Histone H4 OS=Physarum polycephalum OX=5791 GN=H41 PE=3 SV=2)

HSP 1 Score: 94.0 bits (232), Expect = 7.9e-19
Identity = 50/54 (92.59%), Postives = 52/54 (96.30%), Query Frame = 0


Query: 1  MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISD--YEQ 53
          MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRIS+  YE+
Sbjct: 1  MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISNTIYEE 54

[Close]

BLAST of Chy3G051960 vs. ExPASy Swiss-Prot
Match: P62785 (Histone H4 variant TH011 OS=Triticum aestivum OX=4565 PE=3 SV=2)

HSP 1 Score: 92.8 bits (229), Expect = 1.8e-18
Identity = 48/48 (100.00%), Postives = 48/48 (100.00%), Query Frame = 0


Query: 1  MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRIS 49
          MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRIS
Sbjct: 1  MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRIS 48

[Close]

BLAST of Chy3G051960 vs. ExPASy Swiss-Prot
Match: P70081 (Histone H4 type VIII OS=Gallus gallus OX=9031 GN=H4-VIII PE=3 SV=3)

HSP 1 Score: 92.8 bits (229), Expect = 1.8e-18
Identity = 48/48 (100.00%), Postives = 48/48 (100.00%), Query Frame = 0


Query: 1  MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRIS 49
          MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRIS
Sbjct: 1  MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRIS 48

[Close]

BLAST of Chy3G051960 vs. ExPASy Swiss-Prot
Match: Q8MTV8 (Histone H4 OS=Aplysia californica OX=6500 GN=His.H4 PE=3 SV=3)

HSP 1 Score: 92.8 bits (229), Expect = 1.8e-18
Identity = 48/48 (100.00%), Postives = 48/48 (100.00%), Query Frame = 0


Query: 1  MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRIS 49
          MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRIS
Sbjct: 1  MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRIS 48

[Close]

BLAST of Chy3G051960 vs. ExPASy Swiss-Prot
Match: P59259 (Histone H4 OS=Arabidopsis thaliana OX=3702 GN=At1g07660 PE=1 SV=2)

HSP 1 Score: 92.8 bits (229), Expect = 1.8e-18
Identity = 48/48 (100.00%), Postives = 48/48 (100.00%), Query Frame = 0


Query: 1  MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRIS 49
          MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRIS
Sbjct: 1  MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRIS 48

[Close]

BLAST of Chy3G051960 vs. ExPASy TrEMBL
Match: A0A226MF08 (Histone H4 OS=Colinus virginianus OX=9014 GN=H355_012712 PE=3 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 5.8e-17
Identity = 54/66 (81.82%), Postives = 57/66 (86.36%), Query Frame = 0


Query: 1  MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISD--YEQAL-KLK 60
          MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRIS   YE+    LK
Sbjct: 1  MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61 FGINQL 64
           G+N +
Sbjct: 61 VGLNAI 66

[Close]

BLAST of Chy3G051960 vs. ExPASy TrEMBL
Match: G0PJM5 (Histone H4 OS=Caenorhabditis brenneri OX=135651 GN=Cbn-his-60 PE=3 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 1.3e-16
Identity = 49/50 (98.00%), Postives = 49/50 (98.00%), Query Frame = 0


Query: 1  MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISDY 51
          MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRIS Y
Sbjct: 1  MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGY 50

[Close]

BLAST of Chy3G051960 vs. ExPASy TrEMBL
Match: A0A7K5D1Z4 (Histone H4 (Fragment) OS=Pachyramphus minor OX=369605 GN=H4 PE=3 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 1.3e-16
Identity = 55/78 (70.51%), Postives = 63/78 (80.77%), Query Frame = 0


Query: 1  MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISD--YEQ---ALK 60
          MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRIS   YE+    LK
Sbjct: 1  MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61 LKFGINQLNVYDLINGYV 74
          +  G+ ++ + ++I   V
Sbjct: 61 VFXGVLKVFLENVIRDAV 78

[Close]

BLAST of Chy3G051960 vs. ExPASy TrEMBL
Match: A0A6B0RJN0 (Histone H4 OS=Bos mutus OX=72004 GN=E5288_WYG022156 PE=3 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 1.7e-16
Identity = 51/56 (91.07%), Postives = 52/56 (92.86%), Query Frame = 0


Query: 1  MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISD--YEQAL 55
          MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRIS   YE+ L
Sbjct: 1  MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETL 56

[Close]

BLAST of Chy3G051960 vs. ExPASy TrEMBL
Match: A0A6J2J9W5 (Histone H4 OS=Bombyx mandarina OX=7092 GN=LOC114240022 PE=3 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 2.2e-16
Identity = 52/66 (78.79%), Postives = 58/66 (87.88%), Query Frame = 0


Query: 1  MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISD--YEQALKLKF 60
          M+GRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRIS   YE+ +  + 
Sbjct: 1  MTGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEEXMLFR- 60

Query: 61 GINQLN 65
          GI+ L+
Sbjct: 61 GIDNLS 65

[Close]

BLAST of Chy3G051960 vs. NCBI nr
Match: EGT60009.1 (CBN-HIS-60 protein [Caenorhabditis brenneri])

HSP 1 Score: 93.6 bits (231), Expect = 2.73e-23
Identity = 49/50 (98.00%), Postives = 49/50 (98.00%), Query Frame = 0


Query: 1  MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISDY 50
          MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRIS Y
Sbjct: 1  MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGY 50

[Close]

BLAST of Chy3G051960 vs. NCBI nr
Match: KAF6159633.1 (hypothetical protein GIB67_034595 [Kingdonia uniflora])

HSP 1 Score: 92.8 bits (229), Expect = 9.32e-23
Identity = 48/50 (96.00%), Postives = 50/50 (100.00%), Query Frame = 0


Query: 1  MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISDY 50
          MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRIS++
Sbjct: 1  MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISEH 50

[Close]

BLAST of Chy3G051960 vs. NCBI nr
Match: XP_021500552.1 (histone H4-like [Meriones unguiculatus])

HSP 1 Score: 92.8 bits (229), Expect = 9.84e-23
Identity = 50/53 (94.34%), Postives = 50/53 (94.34%), Query Frame = 0


Query: 1  MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISDYEQA 53
          MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRIS  E A
Sbjct: 1  MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISYTEHA 53

[Close]

BLAST of Chy3G051960 vs. NCBI nr
Match: NP_001093194.1 (H4 clustered histone 4 [Bos taurus] >XP_033290630.1 histone H4-like [Orcinus orca] >AAI42000.1 LOC617875 protein [Bos taurus])

HSP 1 Score: 92.8 bits (229), Expect = 1.91e-22
Identity = 51/55 (92.73%), Postives = 52/55 (94.55%), Query Frame = 0


Query: 1  MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISD--YEQA 53
          MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRIS   YE+A
Sbjct: 1  MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEEA 55

[Close]

BLAST of Chy3G051960 vs. NCBI nr
Match: NXW11472.1 (H4 protein [Fregetta grallaria] >CAF1289413.1 unnamed protein product, partial [Didymodactylos carnosus] >CAF4753180.1 unnamed protein product, partial [Rotaria magnacalcarata] >CAF4094248.1 unnamed protein product, partial [Didymodactylos carnosus] >CAF4922649.1 unnamed protein product, partial [Rotaria magnacalcarata])

HSP 1 Score: 91.3 bits (225), Expect = 2.09e-22
Identity = 50/54 (92.59%), Postives = 51/54 (94.44%), Query Frame = 0


Query: 1  MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISD--YEQ 52
          MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRIS   YE+
Sbjct: 1  MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEE 54

[Close]

BLAST of Chy3G051960 vs. TAIR 10
Match: AT1G07660.1 (Histone superfamily protein )

HSP 1 Score: 92.8 bits (229), Expect = 1.2e-19
Identity = 48/48 (100.00%), Postives = 48/48 (100.00%), Query Frame = 0


Query: 1  MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRIS 49
          MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRIS
Sbjct: 1  MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRIS 48

[Close]

BLAST of Chy3G051960 vs. TAIR 10
Match: AT1G07820.1 (Histone superfamily protein )

HSP 1 Score: 92.8 bits (229), Expect = 1.2e-19
Identity = 48/48 (100.00%), Postives = 48/48 (100.00%), Query Frame = 0


Query: 1  MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRIS 49
          MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRIS
Sbjct: 1  MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRIS 48

[Close]

BLAST of Chy3G051960 vs. TAIR 10
Match: AT1G07820.2 (Histone superfamily protein )

HSP 1 Score: 92.8 bits (229), Expect = 1.2e-19
Identity = 48/48 (100.00%), Postives = 48/48 (100.00%), Query Frame = 0


Query: 1  MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRIS 49
          MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRIS
Sbjct: 1  MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRIS 48

[Close]

BLAST of Chy3G051960 vs. TAIR 10
Match: AT2G28740.1 (histone H4 )

HSP 1 Score: 92.8 bits (229), Expect = 1.2e-19
Identity = 48/48 (100.00%), Postives = 48/48 (100.00%), Query Frame = 0


Query: 1  MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRIS 49
          MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRIS
Sbjct: 1  MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRIS 48

[Close]

BLAST of Chy3G051960 vs. TAIR 10
Match: AT3G45930.1 (Histone superfamily protein )

HSP 1 Score: 92.8 bits (229), Expect = 1.2e-19
Identity = 48/48 (100.00%), Postives = 48/48 (100.00%), Query Frame = 0


Query: 1  MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRIS 49
          MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRIS
Sbjct: 1  MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRIS 48

The following BLAST results are available for this feature:

BLAST of Chy3G051960 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P04915	7.9e-19	92.59	Histone H4 OS=Physarum polycephalum OX=5791 GN=H41 PE=3 SV=2	[more]
P62785	1.8e-18	100.00	Histone H4 variant TH011 OS=Triticum aestivum OX=4565 PE=3 SV=2	[more]
P70081	1.8e-18	100.00	Histone H4 type VIII OS=Gallus gallus OX=9031 GN=H4-VIII PE=3 SV=3	[more]
Q8MTV8	1.8e-18	100.00	Histone H4 OS=Aplysia californica OX=6500 GN=His.H4 PE=3 SV=3	[more]
P59259	1.8e-18	100.00	Histone H4 OS=Arabidopsis thaliana OX=3702 GN=At1g07660 PE=1 SV=2	[more]

BLAST of Chy3G051960 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A226MF08	5.8e-17	81.82	Histone H4 OS=Colinus virginianus OX=9014 GN=H355_012712 PE=3 SV=1	[more]
G0PJM5	1.3e-16	98.00	Histone H4 OS=Caenorhabditis brenneri OX=135651 GN=Cbn-his-60 PE=3 SV=1	[more]
A0A7K5D1Z4	1.3e-16	70.51	Histone H4 (Fragment) OS=Pachyramphus minor OX=369605 GN=H4 PE=3 SV=1	[more]
A0A6B0RJN0	1.7e-16	91.07	Histone H4 OS=Bos mutus OX=72004 GN=E5288_WYG022156 PE=3 SV=1	[more]
A0A6J2J9W5	2.2e-16	78.79	Histone H4 OS=Bombyx mandarina OX=7092 GN=LOC114240022 PE=3 SV=1	[more]

BLAST of Chy3G051960 vs. NCBI nr


Match Name	E-value	Identity	Description
EGT60009.1	2.73e-23	98.00	CBN-HIS-60 protein [Caenorhabditis brenneri]	[more]
KAF6159633.1	9.32e-23	96.00	hypothetical protein GIB67_034595 [Kingdonia uniflora]	[more]
XP_021500552.1	9.84e-23	94.34	histone H4-like [Meriones unguiculatus]	[more]
NP_001093194.1	1.91e-22	92.73	H4 clustered histone 4 [Bos taurus] >XP_033290630.1 histone H4-like [Orcinus orc...	[more]
NXW11472.1	2.09e-22	92.59	H4 protein [Fregetta grallaria] >CAF1289413.1 unnamed protein product, partial [...	[more]

BLAST of Chy3G051960 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G07660.1	1.2e-19	100.00	Histone superfamily protein	[more]
AT1G07820.1	1.2e-19	100.00	Histone superfamily protein	[more]
AT1G07820.2	1.2e-19	100.00	Histone superfamily protein	[more]
AT2G28740.1	1.2e-19	100.00	histone H4	[more]
AT3G45930.1	1.2e-19	100.00	Histone superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001951	Histone H4	PRINTS	PR00623	HISTONEH4	coord: 40..60 score: 42.58 coord: 5..16 score: 95.59 coord: 20..39 score: 93.38
IPR009072	Histone-fold	GENE3D	1.10.20.10	Histone, subunit A	coord: 2..54 e-value: 2.6E-23 score: 84.0
IPR009072	Histone-fold	SUPERFAMILY	47113	Histone-fold	coord: 3..49
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..20
None	No IPR available	PANTHER	PTHR10484	HISTONE H4	coord: 1..49
None	No IPR available	PANTHER	PTHR10484:SF186	HISTONE H4	coord: 1..49
IPR019809	Histone H4, conserved site	PROSITE	PS00047	HISTONE_H4	coord: 15..19

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy3G051960.1	Chy3G051960.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006352	DNA-templated transcription, initiation
biological_process	GO:0006334	nucleosome assembly
cellular_component	GO:0005654	nucleoplasm
cellular_component	GO:0000786	nucleosome
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046982	protein heterodimerization activity