Chy3G051930 (gene) Cucumber (hystrix) v1

Overview


Name	Chy3G051930
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	HIG1 domain-containing protein
Location	chrH03: 2000949 .. 2001505 (-)
RNA-Seq Expression	Chy3G051930
Synteny	Chy3G051930

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGCTATTCAAGCTTGGGTTTCAGAACACAAACTCACCACCATTGGTACTTATTAGTTACTACTGCTCTTCTTCCTCATTTCCCAATCTTTTTTCTTTACTCTCTTTCTAAATCTAATCACTTTGTTTTTGGGTTATACATATAGGAGCTCTGTGGGCATCTGGGATTGGAGCATCGCTGGCCTATACCAGATCAAGAACTCCCCTCAAGCCAAGTCTCCGCCTTATTCATGCCAGGTTTAATACCTCAAATTACTCTTCTCTTCTCTACATTTAGTATTGTGCAGAATAAAATAGTGTATGTCCCATATATCCCATGAGTATAGAGTATTACGATACAGAATAAAATAGTCGTAGTGTAACTATTTTTCCCATTCTCTTTTTCTTATTCAAATTGAGAATGAAATATTAATTTGGTTTTGTTTGTAATTAGGATGCATGCTCAGGCATTGACCTTAGCGGTTCTTTCCGGCGCGGCCGTCTACCACTACTACGACAACAAAATTGGAAGGGACCGATCTGAAGCTCCTCCGGCTTCTGGGGGAGGGAAATGA

mRNA sequence

ATGGAAGCTATTCAAGCTTGGGTTTCAGAACACAAACTCACCACCATTGGAGCTCTGTGGGCATCTGGGATTGGAGCATCGCTGGCCTATACCAGATCAAGAACTCCCCTCAAGCCAAGTCTCCGCCTTATTCATGCCAGGATGCATGCTCAGGCATTGACCTTAGCGGTTCTTTCCGGCGCGGCCGTCTACCACTACTACGACAACAAAATTGGAAGGGACCGATCTGAAGCTCCTCCGGCTTCTGGGGGAGGGAAATGA

Coding sequence (CDS)

ATGGAAGCTATTCAAGCTTGGGTTTCAGAACACAAACTCACCACCATTGGAGCTCTGTGGGCATCTGGGATTGGAGCATCGCTGGCCTATACCAGATCAAGAACTCCCCTCAAGCCAAGTCTCCGCCTTATTCATGCCAGGATGCATGCTCAGGCATTGACCTTAGCGGTTCTTTCCGGCGCGGCCGTCTACCACTACTACGACAACAAAATTGGAAGGGACCGATCTGAAGCTCCTCCGGCTTCTGGGGGAGGGAAATGA

Protein sequence

MEAIQAWVSEHKLTTIGALWASGIGASLAYTRSRTPLKPSLRLIHARMHAQALTLAVLSGAAVYHYYDNKIGRDRSEAPPASGGGK*

Homology

[Close]

BLAST of Chy3G051930 vs. ExPASy TrEMBL
Match: A0A0A0K7T4 (HIG1 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G013920 PE=4 SV=1)

HSP 1 Score: 171.8 bits (434), Expect = 1.3e-39
Identity = 85/86 (98.84%), Postives = 85/86 (98.84%), Query Frame = 0


Query: 1  MEAIQAWVSEHKLTTIGALWASGIGASLAYTRSRTPLKPSLRLIHARMHAQALTLAVLSG 60
          MEAIQAWVSEHKLTTIGALWASGIGASLAYTRSRTPLKPSLRLIHARMHAQALTLAVLSG
Sbjct: 1  MEAIQAWVSEHKLTTIGALWASGIGASLAYTRSRTPLKPSLRLIHARMHAQALTLAVLSG 60

Query: 61 AAVYHYYDNKIGRDRSEAPPASGGGK 87
          AAVYHYYDNKIGRDRSEAPP SGGGK
Sbjct: 61 AAVYHYYDNKIGRDRSEAPPVSGGGK 86

[Close]

BLAST of Chy3G051930 vs. ExPASy TrEMBL
Match: A0A5A7UEZ1 (Respiratory supercomplex factor 2-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold409G001530 PE=4 SV=1)

HSP 1 Score: 164.1 bits (414), Expect = 2.6e-37
Identity = 81/86 (94.19%), Postives = 82/86 (95.35%), Query Frame = 0


Query: 1  MEAIQAWVSEHKLTTIGALWASGIGASLAYTRSRTPLKPSLRLIHARMHAQALTLAVLSG 60
          MEAIQAWVSEHKLTTIGALWASG+GASLAYTRSRTPLKPSLRLIHARMHAQALTLAVLSG
Sbjct: 1  MEAIQAWVSEHKLTTIGALWASGMGASLAYTRSRTPLKPSLRLIHARMHAQALTLAVLSG 60

Query: 61 AAVYHYYDNKIGRDRSEAPPASGGGK 87
          AAVYHYYDNK G DRSEAPP S GGK
Sbjct: 61 AAVYHYYDNKFGNDRSEAPPVSRGGK 86

[Close]

BLAST of Chy3G051930 vs. ExPASy TrEMBL
Match: A0A7J7I509 (HIG1 domain-containing protein OS=Camellia sinensis OX=4442 GN=HYC85_000926 PE=4 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 3.2e-27
Identity = 61/72 (84.72%), Postives = 70/72 (97.22%), Query Frame = 0


Query: 1   MEAIQAWVSEHKLTTIGALWASGIGASLAYTRSRTPLKPSLRLIHARMHAQALTLAVLSG 60
           MEA+Q+WVSEHKLT+IG LWASGIGASLAY+R++TPLKPSLRLIHARMHAQALTLAVLSG
Sbjct: 38  MEALQSWVSEHKLTSIGTLWASGIGASLAYSRAKTPLKPSLRLIHARMHAQALTLAVLSG 97

Query: 61  AAVYHYYDNKIG 73
           AAVYHYY+ ++G
Sbjct: 98  AAVYHYYEKRLG 109

[Close]

BLAST of Chy3G051930 vs. ExPASy TrEMBL
Match: A0A5J5AU49 (HIG1 domain-containing protein OS=Nyssa sinensis OX=561372 GN=F0562_031517 PE=4 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 9.4e-27
Identity = 61/80 (76.25%), Postives = 69/80 (86.25%), Query Frame = 0


Query: 1  MEAIQAWVSEHKLTTIGALWASGIGASLAYTRSRTPLKPSLRLIHARMHAQALTLAVLSG 60
          MEA+Q+WVSEHKLT+IG LWAS IGASLAY+R++TPLKPSLRLIHARMHAQALTLAVLSG
Sbjct: 1  MEALQSWVSEHKLTSIGTLWASAIGASLAYSRAKTPLKPSLRLIHARMHAQALTLAVLSG 60

Query: 61 AAVYHYYDNKIGRDRSEAPP 81
          AA YHYY+ + G     A P
Sbjct: 61 AAAYHYYEKRAGEQGDNASP 80

[Close]

BLAST of Chy3G051930 vs. ExPASy TrEMBL
Match: A0A6A6N2Z1 (HIG1 domain-containing protein OS=Hevea brasiliensis OX=3981 GN=GH714_014009 PE=4 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 4.7e-26
Identity = 62/83 (74.70%), Postives = 72/83 (86.75%), Query Frame = 0


Query: 1  MEAIQAWVSEHKLTTIGALWASGIGASLAYTRSRTPLKPSLRLIHARMHAQALTLAVLSG 60
          MEA Q+WVSEHKLT+IGALWA+ +G SLAYTR++TPLKPSLRLIHARMHAQALTLAVLS 
Sbjct: 1  MEAFQSWVSEHKLTSIGALWATAVGGSLAYTRTKTPLKPSLRLIHARMHAQALTLAVLSS 60

Query: 61 AAVYHYYDNKIGRDRSEAPPASG 84
          AA+YHYY+ K G + + A  ASG
Sbjct: 61 AAIYHYYEKKQGENNAAA--ASG 81

[Close]

BLAST of Chy3G051930 vs. NCBI nr
Match: XP_004138401.1 (uncharacterized protein LOC101218681 [Cucumis sativus] >KGN45820.1 hypothetical protein Csa_005574 [Cucumis sativus])

HSP 1 Score: 172 bits (437), Expect = 3.70e-54
Identity = 85/86 (98.84%), Postives = 85/86 (98.84%), Query Frame = 0


Query: 1  MEAIQAWVSEHKLTTIGALWASGIGASLAYTRSRTPLKPSLRLIHARMHAQALTLAVLSG 60
          MEAIQAWVSEHKLTTIGALWASGIGASLAYTRSRTPLKPSLRLIHARMHAQALTLAVLSG
Sbjct: 1  MEAIQAWVSEHKLTTIGALWASGIGASLAYTRSRTPLKPSLRLIHARMHAQALTLAVLSG 60

Query: 61 AAVYHYYDNKIGRDRSEAPPASGGGK 86
          AAVYHYYDNKIGRDRSEAPP SGGGK
Sbjct: 61 AAVYHYYDNKIGRDRSEAPPVSGGGK 86

[Close]

BLAST of Chy3G051930 vs. NCBI nr
Match: KAA0052029.1 (respiratory supercomplex factor 2-like protein [Cucumis melo var. makuwa] >TYK04531.1 respiratory supercomplex factor 2-like protein-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 165 bits (417), Expect = 4.18e-51
Identity = 81/86 (94.19%), Postives = 82/86 (95.35%), Query Frame = 0


Query: 1  MEAIQAWVSEHKLTTIGALWASGIGASLAYTRSRTPLKPSLRLIHARMHAQALTLAVLSG 60
          MEAIQAWVSEHKLTTIGALWASG+GASLAYTRSRTPLKPSLRLIHARMHAQALTLAVLSG
Sbjct: 1  MEAIQAWVSEHKLTTIGALWASGMGASLAYTRSRTPLKPSLRLIHARMHAQALTLAVLSG 60

Query: 61 AAVYHYYDNKIGRDRSEAPPASGGGK 86
          AAVYHYYDNK G DRSEAPP S GGK
Sbjct: 61 AAVYHYYDNKFGNDRSEAPPVSRGGK 86

[Close]

BLAST of Chy3G051930 vs. NCBI nr
Match: XP_038886475.1 (uncharacterized protein LOC120076661 [Benincasa hispida])

HSP 1 Score: 147 bits (370), Expect = 6.01e-44
Identity = 73/84 (86.90%), Postives = 77/84 (91.67%), Query Frame = 0


Query: 1  MEAIQAWVSEHKLTTIGALWASGIGASLAYTRSRTPLKPSLRLIHARMHAQALTLAVLSG 60
          MEAIQ WVSEHKLTTIGALWASGIGASLAYTRSRT LKPSLRLIHARMHAQALTLAVLSG
Sbjct: 1  MEAIQVWVSEHKLTTIGALWASGIGASLAYTRSRTLLKPSLRLIHARMHAQALTLAVLSG 60

Query: 61 AAVYHYYDNKIGRDRSEAPPASGG 84
          AAVYHYY++K+   RSEAP + GG
Sbjct: 61 AAVYHYYEDKLAGGRSEAPASPGG 84

[Close]

BLAST of Chy3G051930 vs. NCBI nr
Match: KAG6578469.1 (hypothetical protein SDJN03_22917, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 144 bits (362), Expect = 1.09e-42
Identity = 71/82 (86.59%), Postives = 76/82 (92.68%), Query Frame = 0


Query: 1  MEAIQAWVSEHKLTTIGALWASGIGASLAYTRSRTPLKPSLRLIHARMHAQALTLAVLSG 60
          MEAIQAWVS+HKLT+IGALWASGIGASLAYTRS TPLKPSLRLIHARMHAQALTLAVLSG
Sbjct: 1  MEAIQAWVSQHKLTSIGALWASGIGASLAYTRSTTPLKPSLRLIHARMHAQALTLAVLSG 60

Query: 61 AAVYHYYDNKIGRDRSEAPPAS 82
          AAVYHYY+NK    RSEAP ++
Sbjct: 61 AAVYHYYENKSAGVRSEAPTSA 82

[Close]

BLAST of Chy3G051930 vs. NCBI nr
Match: KAG7016034.1 (BTB/POZ domain-containing protein, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 144 bits (362), Expect = 2.44e-39
Identity = 71/82 (86.59%), Postives = 76/82 (92.68%), Query Frame = 0


Query: 1  MEAIQAWVSEHKLTTIGALWASGIGASLAYTRSRTPLKPSLRLIHARMHAQALTLAVLSG 60
          MEAIQAWVS+HKLT+IGALWASGIGASLAYTRS TPLKPSLRLIHARMHAQALTLAVLSG
Sbjct: 1  MEAIQAWVSQHKLTSIGALWASGIGASLAYTRSTTPLKPSLRLIHARMHAQALTLAVLSG 60

Query: 61 AAVYHYYDNKIGRDRSEAPPAS 82
          AAVYHYY+NK    RSEAP ++
Sbjct: 61 AAVYHYYENKSAGVRSEAPTSA 82

[Close]

BLAST of Chy3G051930 vs. TAIR 10
Match: AT3G05550.1 (Hypoxia-responsive family protein )

HSP 1 Score: 90.5 bits (223), Expect = 7.2e-19
Identity = 42/69 (60.87%), Postives = 54/69 (78.26%), Query Frame = 0


Query: 2  EAIQAWVSEHKLTTIGALWASGIGASLAYTRSRTPLKPSLRLIHARMHAQALTLAVLSGA 61
          E I+ WVS+HKL T+G LW SGI  S+AY  S+  +K S+++IHAR+HAQALTLA L+GA
Sbjct: 9  EEIRKWVSDHKLRTVGCLWLSGITGSIAYNWSQPAMKTSVKIIHARLHAQALTLAALAGA 68

Query: 62 AVYHYYDNK 71
          AV  YYD+K
Sbjct: 69 AVVEYYDHK 77

[Close]

BLAST of Chy3G051930 vs. TAIR 10
Match: AT5G27760.1 (Hypoxia-responsive family protein )

HSP 1 Score: 89.7 bits (221), Expect = 1.2e-18
Identity = 41/69 (59.42%), Postives = 52/69 (75.36%), Query Frame = 0


Query: 4  IQAWVSEHKLTTIGALWASGIGASLAYTRSRTPLKPSLRLIHARMHAQALTLAVLSGAAV 63
          I+ W+ EHKL T+G LW SGI  S+AY  S+  +K S+R+IHAR+HAQALTLA L+GAA 
Sbjct: 11 IREWIIEHKLRTVGCLWLSGISGSIAYNWSKPAMKTSVRIIHARLHAQALTLAALAGAAA 70

Query: 64 YHYYDNKIG 73
            YYD+K G
Sbjct: 71 VEYYDHKSG 79

The following BLAST results are available for this feature:

BLAST of Chy3G051930 vs.


Match Name	E-value	Identity	Description

BLAST of Chy3G051930 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K7T4	1.3e-39	98.84	HIG1 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G013920 PE=4 S...	[more]
A0A5A7UEZ1	2.6e-37	94.19	Respiratory supercomplex factor 2-like protein OS=Cucumis melo var. makuwa OX=11...	[more]
A0A7J7I509	3.2e-27	84.72	HIG1 domain-containing protein OS=Camellia sinensis OX=4442 GN=HYC85_000926 PE=4...	[more]
A0A5J5AU49	9.4e-27	76.25	HIG1 domain-containing protein OS=Nyssa sinensis OX=561372 GN=F0562_031517 PE=4 ...	[more]
A0A6A6N2Z1	4.7e-26	74.70	HIG1 domain-containing protein OS=Hevea brasiliensis OX=3981 GN=GH714_014009 PE=...	[more]

BLAST of Chy3G051930 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004138401.1	3.70e-54	98.84	uncharacterized protein LOC101218681 [Cucumis sativus] >KGN45820.1 hypothetical ...	[more]
KAA0052029.1	4.18e-51	94.19	respiratory supercomplex factor 2-like protein [Cucumis melo var. makuwa] >TYK04...	[more]
XP_038886475.1	6.01e-44	86.90	uncharacterized protein LOC120076661 [Benincasa hispida]	[more]
KAG6578469.1	1.09e-42	86.59	hypothetical protein SDJN03_22917, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7016034.1	2.44e-39	86.59	BTB/POZ domain-containing protein, partial [Cucurbita argyrosperma subsp. argyro...	[more]

BLAST of Chy3G051930 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G05550.1	7.2e-19	60.87	Hypoxia-responsive family protein	[more]
AT5G27760.1	1.2e-18	59.42	Hypoxia-responsive family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007667	Hypoxia induced protein, domain	PFAM	PF04588	HIG_1_N	coord: 10..59 e-value: 5.6E-9 score: 36.1
IPR007667	Hypoxia induced protein, domain	PROSITE	PS51503	HIG1	coord: 1..76 score: 20.645969
None	No IPR available	GENE3D	6.10.140.1320		coord: 13..73 e-value: 1.3E-6 score: 30.0
None	No IPR available	PANTHER	PTHR28018:SF3	RESPIRATORY SUPERCOMPLEX FACTOR 2, MITOCHONDRIAL	coord: 4..75
IPR040153	Respiratory supercomplex factor 2, mitochondrial	PANTHER	PTHR28018	RESPIRATORY SUPERCOMPLEX FACTOR 2, MITOCHONDRIAL	coord: 4..75

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy3G051930.1	Chy3G051930.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0033617	mitochondrial cytochrome c oxidase assembly
cellular_component	GO:0031305	integral component of mitochondrial inner membrane
cellular_component	GO:0005746	mitochondrial respirasome