Chy3G050340 (gene) Cucumber (hystrix) v1

Overview
NameChy3G050340
Typegene
OrganismCucumis hystrix (Cucumber (hystrix) v1)
DescriptionUnknown protein
LocationchrH03: 570697 .. 571520 (-)
RNA-Seq ExpressionChy3G050340
SyntenyChy3G050340
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GTGTATAGTTTTTCTGAGGTTTGGAGTTTCTTTACTATTTTTCTGCTTATCTCTGTCGTACATAGTCGTGGAAGGGCGAAGACGAGCTTAGAGTTTTGTGAAAGAGGTGTTTCTTTTGAACCACTCCACCTTGTAAACAAGCCTTTGAATCGTATGCATGAGAATGTGGAAAAGTGATACGATTGGCATAAAGTTAAAAGGAACAAAACTTTGCTTGGATGACTTTTTTTATTCCCTTTTAACAGTTAATGGCAGCAAGAAGACAATAAAAATTTTAAAAACAAAAGAAAAACCAAATAATAGATGTAAATTAAAGGACAAATATGTAAATTTACTCGTTTTTTGTCTTAAGATGGAAAAGGAAAAACTCATATATATTGGAGAGGCATTGCACCTATATATATCCCACCATCTTCACCACCTGAAGTTCATCAATCAAATTCTCTTTTTAGACATATCTTTTTACAGAAATGAAGCCACTCAGTCTTCTTTGCATTTTCATTATTCTTTCCTTTCTCCTTCAGGTAATATTTCTATTTTTATGTATGCTTTTTTTACATTTTACATTTTTATTTAACAAATTTCATTTAATGAATTTTGTTTCATGTATTTTGATGTAGGGTTTTTCTGAGGCCATCGCTACCGTGAGTGTTGCTTTACTTTTTAACTTTCCAGCGTTACCTTTTCTAAGTTTTGCAATTCATTGAATTGAAATTTTGAGATTATTGTTGAGGCTTATAGCTAATAATCATCCCAACTCGTTATAGAGTCTCTTAAAGTTGGGGGAGTGGACTAGCTTACTCCATGTTCGGGGCTCTAATTAT

mRNA sequence

GTGTATAGTTTTTCTGAGGGCGAAGACGAGCTTAGAGTTTTGTGAAAGAGATGGAAAAGGAAAAACTCATATATATTGGAGAGGCATTGCACCTATATATATCCCACCATCTTCACCACCTGAAGTTCATCAATCAAATTCTCTTTTTAGACATATCTTTTTACAGAAATGAAGCCACTCAGTCTTCTTTGCATTTTCATTATTCTTTCCTTTCTCCTTCAGGGTTTTTCTGAGGCCATCGCTACCTTGGGGGAGTGGACTAGCTTACTCCATGTTCGGGGCTCTAATTAT

Coding sequence (CDS)

GTGTATAGTTTTTCTGAGGGCGAAGACGAGCTTAGAGTTTTGTGAAAGAGATGGAAAAGGAAAAACTCATATATATTGGAGAGGCATTGCACCTATATATATCCCACCATCTTCACCACCTGAAGTTCATCAATCAAATTCTCTTTTTAGACATATCTTTTTACAGAAATGAAGCCACTCAGTCTTCTTTGCATTTTCATTATTCTTTCCTTTCTCCTTCAGGGTTTTTCTGAGGCCATCGCTACCTTGGGGGAGTGGACTAGCTTACTCCATGTTCGGGGCTCTAATTAT

Protein sequence

VYSFSEGEDELRVL*KRWKRKNSYILERHCTYIYPTIFTT*SSSIKFSF*TYLFTEMKPLSLLCIFIILSFLLQGFSEAIATLGEWTSLLHVRGSNY
Homology
[Close]
BLAST of Chy3G050340 vs. ExPASy TrEMBL
Match: A0A0A0LMS4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G402110 PE=3 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 3.3e-04
Identity = 28/32 (87.50%), Postives = 30/32 (93.75%), Query Frame = 0 

Query: 57 MKPLSLLCIFIILSFLLQGFSEAIATLGEWTS 89
          MKPLSLLCIFIILSFLLQGFSEAIAT+ E T+
Sbjct: 1  MKPLSLLCIFIILSFLLQGFSEAIATVDEGTN 32

[Close]
BLAST of Chy3G050340 vs. NCBI nr
Match: XP_004138815.1 (gibberellin-regulated protein 9 [Cucumis sativus])

HSP 1 Score: 53.5 bits (127), Expect = 1.27e-06
Identity = 28/32 (87.50%), Postives = 30/32 (93.75%), Query Frame = 0 

Query: 57 MKPLSLLCIFIILSFLLQGFSEAIATLGEWTS 88
          MKPLSLLCIFIILSFLLQGFSEAIAT+ E T+
Sbjct: 1  MKPLSLLCIFIILSFLLQGFSEAIATVDEGTN 32

[Close]
BLAST of Chy3G050340 vs. NCBI nr
Match: XP_008441216.1 (PREDICTED: gibberellin-regulated protein 9 [Cucumis melo])

HSP 1 Score: 49.7 bits (117), Expect = 3.98e-05
Identity = 26/32 (81.25%), Postives = 28/32 (87.50%), Query Frame = 0 

Query: 57 MKPLSLLCIFIILSFLLQGFSEAIATLGEWTS 88
          MKPLSLLCIFIILSFLLQGFSEAI T+   T+
Sbjct: 1  MKPLSLLCIFIILSFLLQGFSEAITTVDAGTN 32

[Close]
BLAST of Chy3G050340 vs. NCBI nr
Match: XP_038885058.1 (gibberellin-regulated protein 9-like [Benincasa hispida])

HSP 1 Score: 48.1 bits (113), Expect = 1.57e-04
Identity = 25/32 (78.12%), Postives = 27/32 (84.38%), Query Frame = 0 

Query: 57 MKPLSLLCIFIILSFLLQGFSEAIATLGEWTS 88
          MKPLSLLCIFIILS LLQGFSEA  T+ E T+
Sbjct: 1  MKPLSLLCIFIILSILLQGFSEAFTTVDEGTN 32

The following BLAST results are available for this feature:
BLAST of Chy3G050340 vs.
Match NameE-valueIdentityDescription
BLAST of Chy3G050340 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LMS43.3e-0487.50Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G402110 PE=3 SV=1[more]
BLAST of Chy3G050340 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004138815.11.27e-0687.50gibberellin-regulated protein 9 [Cucumis sativus][more]
XP_008441216.13.98e-0581.25PREDICTED: gibberellin-regulated protein 9 [Cucumis melo][more]
XP_038885058.11.57e-0478.13gibberellin-regulated protein 9-like [Benincasa hispida][more]
BLAST of Chy3G050340 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Chy3G050340.1Chy3G050340.1mRNA