Chy3G050230 (gene) Cucumber (hystrix) v1

Overview


Name	Chy3G050230
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	Transcription initiation factor IIA subunit 2
Location	chrH03: 498238 .. 499729 (-)
RNA-Seq Expression	Chy3G050230
Synteny	Chy3G050230

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAACCTTTGAACTCTACCGCAGATCAACAATCGAAATGTGTTTGACTGAAACTTTGGATGAAATGGTTCAGAACGGTACTCTTAGTCCCGAGCTTGCTATTCAGGTTCTTGTCCAGTTCGATAAGGTATAGCCAAAGATGTTAGAAGATGTGGTATACTTTTTTCTTTGTGTTTAGAATTTAGGTCTTGTTTAATTTAATTTGTTACTGCATTTGCAATCGATGACTAAGGCTCTGGAATCACAAGTGAAAAGCAAGGTGACTATCAAGGTATTTTTTTTGGCTTGACAATCTTTAATGCTATAAATTTATGTAGCTAAATAAAGTCAACGTTATAAATTTGAAACATATTTTTACTGATAAGAGGAATCGGTTGTGTTTGCCTTGCTTGTAGATTTCTCTGTTTGTGCTCTAGTGCATGTCTAGACTTGAGCCAAATTATTTTGTCAATAACACATTACACATTTATATGTCAAATGGTGAGAATGATATGATCAATGTGGTACTTAAGTGACTTGGCTCTCCCAATAGCTAACTTTTGGTGTGTGGTTTCTCAAGGTGCTTAAGTACCAAACAATGGTATCGCAGCTAGTTGTCAACGTTTTGAAGTAGAGTCGCCTGAGGGTTCTGACCATGTGTGGCCGAGTGAAGTATTACTGGATTAGCTGCTTGGATGTCGGCTTTTCGGGGATGGAGTATTGTTAGGAACCCATGTAGTGTGGGATGTCGTTGCCCCACATTGGTTAGAATAGATGACCAATGTGATACTTAAGTGGCTTGACTCTTTCACCCAATAGGTGGCTTTTGGGATGTGGTTATCCAGGATGTGGTTCTCCAAGGTGCTTAAGTACCTAACAGTATAGTGGATATTCTCCCGGGTCTTTTGGTTGCCATGTAGTGAACAGAACCATGATATAGGAATGAAACAGTGTACAATATATTTTTCCCTAGGAAATATTGCTCCTTGGATAAGTTTCTTTGGAATAAACTTTGTAGTTCTTTGTGTTCCTGGAATATGGGGACAAATTCATCCCTGTTGTTAGGGAGGTGGCCATATCAGATTCTACATTGAGTCTTCGTAAGTCCACTATTTCAAGTTTTACGTTCAATTCTATGGATGTTGGATTTTCTAACGATACTCAGTTGAAAGTTCATCACACATAGATTGTACGATGACCATTGCTCTAAAAGAAATTATGAAATCATAATCACACAACAATGGTTATTAGCAGTTGTTTAGTTAACATACATGCATGACATTTTGTTTATGTCTCGAACACTTTCTTTCTGGTGATTTCTAAATTTCTTTGTCCTCGTACTGTCTTGTCATGCAACAGGGACATCTACACACTTATCGGTTCTACGACAATGTTCGGACATTCAGGATGAGTCGGTTAAAAATGAGGATTCCAGTGAGACTGTTGGAAGAATTAAAATAGTAGCAAGTTACTGTCACAATAAGCTCTTATACCTCATGTTTATTCAATGA

mRNA sequence

ATGGCAACCTTTGAACTCTACCGCAGATCAACAATCGAAATGTGTTTGACTGAAACTTTGGATGAAATGGTTCAGAACGGTACTCTTAGTCCCGAGCTTGCTATTCAGGTTCTTGTCCAGTTCGATAAGTTCTTTGTGTTCCTGGAATATGGGGACAAATTCATCCCTGTTGTTAGGGAGGTGGCCATATCAGATTCTACATTGAGTCTTCGGACATCTACACACTTATCGGTTCTACGACAATGTTCGGACATTCAGGATGAGTCGGTTAAAAATGAGGATTCCAGTGAGACTGTTGGAAGAATTAAAATAGTAGCAAGTTACTGTCACAATAAGCTCTTATACCTCATGTTTATTCAATGA

Coding sequence (CDS)

ATGGCAACCTTTGAACTCTACCGCAGATCAACAATCGAAATGTGTTTGACTGAAACTTTGGATGAAATGGTTCAGAACGGTACTCTTAGTCCCGAGCTTGCTATTCAGGTTCTTGTCCAGTTCGATAAGTTCTTTGTGTTCCTGGAATATGGGGACAAATTCATCCCTGTTGTTAGGGAGGTGGCCATATCAGATTCTACATTGAGTCTTCGGACATCTACACACTTATCGGTTCTACGACAATGTTCGGACATTCAGGATGAGTCGGTTAAAAATGAGGATTCCAGTGAGACTGTTGGAAGAATTAAAATAGTAGCAAGTTACTGTCACAATAAGCTCTTATACCTCATGTTTATTCAATGA

Protein sequence

MATFELYRRSTIEMCLTETLDEMVQNGTLSPELAIQVLVQFDKFFVFLEYGDKFIPVVREVAISDSTLSLRTSTHLSVLRQCSDIQDESVKNEDSSETVGRIKIVASYCHNKLLYLMFIQ*

Homology

[Close]

BLAST of Chy3G050230 vs. ExPASy Swiss-Prot
Match: Q39236 (Transcription initiation factor IIA subunit 2 OS=Arabidopsis thaliana OX=3702 GN=TFIIA-S PE=3 SV=2)

HSP 1 Score: 98.6 bits (244), Expect = 5.1e-20
Identity = 62/119 (52.10%), Postives = 71/119 (59.66%), Query Frame = 0


Query: 1   MATFELYRRSTIEMCLTETLDEMVQNGTLSPELAIQVLVQFDKFFVFLEYGDKFIPVVRE 60
           MATFELYRRSTI MCLTETLDEMVQ+GTLSPELAIQVLVQFDK              + E
Sbjct: 1   MATFELYRRSTIGMCLTETLDEMVQSGTLSPELAIQVLVQFDK-------------SMTE 60

Query: 61  VAISDSTLSLRTSTHLSVLRQCSDI-----QDESVKNEDSSETVGRIKIVASYCHNKLL 115
              S     +    HL   R C ++     QD   K++D  E V R+KIVA  C +KLL
Sbjct: 61  ALESQVKTKVSIKGHLHTYRFCDNVWTFILQDAMFKSDDRQENVSRVKIVA--CDSKLL 104

[Close]

BLAST of Chy3G050230 vs. ExPASy Swiss-Prot
Match: A2XZI2 (Transcription initiation factor IIA subunit 2 OS=Oryza sativa subsp. indica OX=39946 GN=TFIIAy PE=3 SV=2)

HSP 1 Score: 96.7 bits (239), Expect = 2.0e-19
Identity = 60/119 (50.42%), Postives = 73/119 (61.34%), Query Frame = 0


Query: 1   MATFELYRRSTIEMCLTETLDEMVQNGTLSPELAIQVLVQFDKFFVFLEYGDKFIPVVRE 60
           MATFELYRRSTI MCLTETLDEMV +GTLSPELAIQVLVQFDK              + E
Sbjct: 1   MATFELYRRSTIGMCLTETLDEMVSSGTLSPELAIQVLVQFDK-------------SMTE 60

Query: 61  VAISDSTLSLRTSTHLSVLRQCSDI-----QDESVKNEDSSETVGRIKIVASYCHNKLL 115
              +     +    HL   R C ++      + S KNE+++E VG++KIVA  C +KLL
Sbjct: 61  ALENQVKSKVSIKGHLHTYRFCDNVWTFILTEASFKNEETTEQVGKVKIVA--CDSKLL 104

[Close]

BLAST of Chy3G050230 vs. ExPASy Swiss-Prot
Match: Q0DLD3 (Transcription initiation factor IIA subunit 2 OS=Oryza sativa subsp. japonica OX=39947 GN=TFIIAy PE=3 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 2.0e-19
Identity = 60/119 (50.42%), Postives = 73/119 (61.34%), Query Frame = 0


Query: 1   MATFELYRRSTIEMCLTETLDEMVQNGTLSPELAIQVLVQFDKFFVFLEYGDKFIPVVRE 60
           MATFELYRRSTI MCLTETLDEMV +GTLSPELAIQVLVQFDK              + E
Sbjct: 1   MATFELYRRSTIGMCLTETLDEMVSSGTLSPELAIQVLVQFDK-------------SMTE 60

Query: 61  VAISDSTLSLRTSTHLSVLRQCSDI-----QDESVKNEDSSETVGRIKIVASYCHNKLL 115
              +     +    HL   R C ++      + S KNE+++E VG++KIVA  C +KLL
Sbjct: 61  ALENQVKSKVSIKGHLHTYRFCDNVWTFILTEASFKNEETTEQVGKVKIVA--CDSKLL 104

[Close]

BLAST of Chy3G050230 vs. ExPASy Swiss-Prot
Match: Q5BB99 (Transcription initiation factor IIA subunit 2 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) OX=227321 GN=toa2 PE=3 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 1.5e-06
Identity = 32/115 (27.83%), Postives = 57/115 (49.57%), Query Frame = 0


Query: 2   ATFELYRRSTIEMCLTETLDEMVQNGTLSPELAIQVLVQFDKFFVFLEYGDKFIPVVREV 61
           A +ELYR S++ + LT+TLD+++  G + P+LA+++L  FD+             V+ EV
Sbjct: 5   AYYELYRGSSLGLSLTDTLDDLINEGRIEPQLAMKILSTFDR-------------VITEV 64

Query: 62  AISDSTLSLRTSTHLSVLRQCSDIQDESVKNE----DSSETVGRIKIVASYCHNK 113
                   L    HL   R C ++    +K+     D+ +T+   K+    C++K
Sbjct: 65  LADKVRTRLTFKGHLDTYRFCDEVWTFLIKDVNFKLDNQQTISADKVKIVSCNSK 106

[Close]

BLAST of Chy3G050230 vs. ExPASy Swiss-Prot
Match: O74948 (Transcription initiation factor IIA subunit 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=toa2 PE=3 SV=2)

HSP 1 Score: 53.1 bits (126), Expect = 2.5e-06
Identity = 34/108 (31.48%), Postives = 54/108 (50.00%), Query Frame = 0


Query: 4   FELYRRSTIEMCLTETLDEMVQNGTLSPELAIQVLVQFDKFFVFLEYGDKFIPVVREVAI 63
           +ELYRRS+I + LT+ LD+++  G +SP+LA++VL  FDK              + E   
Sbjct: 5   YELYRRSSIGISLTDALDDLISQGKISPQLAMKVLFNFDK-------------SMTEALA 64

Query: 64  SDSTLSLRTSTHLSVLRQCSDIQDESVKN-----EDSSETVGRIKIVA 107
                 L    HL   R C ++    +KN     ++ + T  +I+IVA
Sbjct: 65  EKVRSRLTFKGHLDTYRFCDEVWTFIIKNPSFRFDNETVTSNKIRIVA 99

[Close]

BLAST of Chy3G050230 vs. ExPASy TrEMBL
Match: A0A1S3B2F6 (Transcription initiation factor IIA subunit 2 OS=Cucumis melo OX=3656 GN=LOC103485407 PE=3 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 1.7e-21
Identity = 70/119 (58.82%), Postives = 76/119 (63.87%), Query Frame = 0


Query: 1   MATFELYRRSTIEMCLTETLDEMVQNGTLSPELAIQVLVQFDKFFVFLEYGDKFIPVVRE 60
           MATFELYRRSTI MCLTETLDEMVQNGTLSPELAIQVLVQFDK              + +
Sbjct: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDK-------------SMTD 60

Query: 61  VAISDSTLSLRTSTHLSVLRQCSDI-----QDESVKNEDSSETVGRIKIVASYCHNKLL 115
              S     +    HL   R C ++     QD S KNEDSSETVGRIKIVA  C +KLL
Sbjct: 61  ALESQVKSKVTIKGHLHTYRFCDNVWTFILQDASFKNEDSSETVGRIKIVA--CDSKLL 104

[Close]

BLAST of Chy3G050230 vs. ExPASy TrEMBL
Match: A0A0A0LMF8 (Transcription initiation factor IIA subunit 2 OS=Cucumis sativus OX=3659 GN=Csa_2G401990 PE=3 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 2.2e-21
Identity = 70/119 (58.82%), Postives = 75/119 (63.03%), Query Frame = 0


Query: 1   MATFELYRRSTIEMCLTETLDEMVQNGTLSPELAIQVLVQFDKFFVFLEYGDKFIPVVRE 60
           MATFELYRRSTI MCLTETLDEMVQNGTLSPELAIQVLVQFDK              + E
Sbjct: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDK-------------SMTE 60

Query: 61  VAISDSTLSLRTSTHLSVLRQCSDI-----QDESVKNEDSSETVGRIKIVASYCHNKLL 115
              S     +    HL   R C ++     QD S KNEDSSE VGRIKIVA  C +KLL
Sbjct: 61  ALESQVKSKVTVKGHLHTYRFCDNVWTFILQDASFKNEDSSENVGRIKIVA--CDSKLL 104

[Close]

BLAST of Chy3G050230 vs. ExPASy TrEMBL
Match: A0A6J1F935 (Transcription initiation factor IIA subunit 2 OS=Cucurbita moschata OX=3662 GN=LOC111443199 PE=3 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 4.8e-21
Identity = 69/119 (57.98%), Postives = 75/119 (63.03%), Query Frame = 0


Query: 1   MATFELYRRSTIEMCLTETLDEMVQNGTLSPELAIQVLVQFDKFFVFLEYGDKFIPVVRE 60
           MATFELYRRSTI MCLTETLDEMVQNGTLSPELAIQVLVQFDK              + E
Sbjct: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDK-------------SMTE 60

Query: 61  VAISDSTLSLRTSTHLSVLRQCSDI-----QDESVKNEDSSETVGRIKIVASYCHNKLL 115
              S     +    HL   R C ++     QD + KNEDS ETVGRIKIVA  C +KLL
Sbjct: 61  ALESQVKSKVSIKGHLHTYRFCDNVWTFILQDATFKNEDSQETVGRIKIVA--CDSKLL 104

[Close]

BLAST of Chy3G050230 vs. ExPASy TrEMBL
Match: A0A6J1ILT9 (Transcription initiation factor IIA subunit 2 OS=Cucurbita maxima OX=3661 GN=LOC111476437 PE=3 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 4.8e-21
Identity = 69/119 (57.98%), Postives = 75/119 (63.03%), Query Frame = 0


Query: 1   MATFELYRRSTIEMCLTETLDEMVQNGTLSPELAIQVLVQFDKFFVFLEYGDKFIPVVRE 60
           MATFELYRRSTI MCLTETLDEMVQNGTLSPELAIQVLVQFDK              + E
Sbjct: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDK-------------SMTE 60

Query: 61  VAISDSTLSLRTSTHLSVLRQCSDI-----QDESVKNEDSSETVGRIKIVASYCHNKLL 115
              S     +    HL   R C ++     QD + KNEDS ETVGRIKIVA  C +KLL
Sbjct: 61  ALESQVKSKVSIKGHLHTYRFCDNVWTFILQDATFKNEDSQETVGRIKIVA--CDSKLL 104

[Close]

BLAST of Chy3G050230 vs. ExPASy TrEMBL
Match: A0A6J1J100 (Transcription initiation factor IIA subunit 2 OS=Cucurbita maxima OX=3661 GN=LOC111480333 PE=3 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 4.8e-21
Identity = 69/119 (57.98%), Postives = 75/119 (63.03%), Query Frame = 0


Query: 1   MATFELYRRSTIEMCLTETLDEMVQNGTLSPELAIQVLVQFDKFFVFLEYGDKFIPVVRE 60
           MATFELYRRSTI MCLTETLDEMVQNGTLSPELAIQVLVQFDK              + E
Sbjct: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDK-------------SMTE 60

Query: 61  VAISDSTLSLRTSTHLSVLRQCSDI-----QDESVKNEDSSETVGRIKIVASYCHNKLL 115
              S     +    HL   R C ++     QD + KNEDS ETVGRIKIVA  C +KLL
Sbjct: 61  ALESQVKSKVTIKGHLHTYRFCDNVWTFILQDATFKNEDSQETVGRIKIVA--CDSKLL 104

[Close]

BLAST of Chy3G050230 vs. NCBI nr
Match: XP_008441202.1 (PREDICTED: transcription initiation factor IIA subunit 2 [Cucumis melo] >XP_008441203.1 PREDICTED: transcription initiation factor IIA subunit 2 [Cucumis melo])

HSP 1 Score: 114 bits (284), Expect = 5.39e-30
Identity = 70/119 (58.82%), Postives = 76/119 (63.87%), Query Frame = 0


Query: 1   MATFELYRRSTIEMCLTETLDEMVQNGTLSPELAIQVLVQFDKFFVFLEYGDKFIPVVRE 60
           MATFELYRRSTI MCLTETLDEMVQNGTLSPELAIQVLVQFDK              + +
Sbjct: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDK-------------SMTD 60

Query: 61  VAISDSTLSLRTSTHLSVLRQCSDI-----QDESVKNEDSSETVGRIKIVASYCHNKLL 114
              S     +    HL   R C ++     QD S KNEDSSETVGRIKIVA  C +KLL
Sbjct: 61  ALESQVKSKVTIKGHLHTYRFCDNVWTFILQDASFKNEDSSETVGRIKIVA--CDSKLL 104

[Close]

BLAST of Chy3G050230 vs. NCBI nr
Match: XP_004138655.1 (transcription initiation factor IIA subunit 2 [Cucumis sativus] >XP_011649891.1 transcription initiation factor IIA subunit 2 [Cucumis sativus] >KGN63090.1 hypothetical protein Csa_022522 [Cucumis sativus])

HSP 1 Score: 113 bits (283), Expect = 7.65e-30
Identity = 70/119 (58.82%), Postives = 75/119 (63.03%), Query Frame = 0


Query: 1   MATFELYRRSTIEMCLTETLDEMVQNGTLSPELAIQVLVQFDKFFVFLEYGDKFIPVVRE 60
           MATFELYRRSTI MCLTETLDEMVQNGTLSPELAIQVLVQFDK              + E
Sbjct: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDK-------------SMTE 60

Query: 61  VAISDSTLSLRTSTHLSVLRQCSDI-----QDESVKNEDSSETVGRIKIVASYCHNKLL 114
              S     +    HL   R C ++     QD S KNEDSSE VGRIKIVA  C +KLL
Sbjct: 61  ALESQVKSKVTVKGHLHTYRFCDNVWTFILQDASFKNEDSSENVGRIKIVA--CDSKLL 104

[Close]

BLAST of Chy3G050230 vs. NCBI nr
Match: KAG7031763.1 (Transcription initiation factor IIA subunit 2 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 112 bits (281), Expect = 1.54e-29
Identity = 69/119 (57.98%), Postives = 75/119 (63.03%), Query Frame = 0


Query: 1   MATFELYRRSTIEMCLTETLDEMVQNGTLSPELAIQVLVQFDKFFVFLEYGDKFIPVVRE 60
           MATFELYRRSTI MCLTETLDEMVQNGTLSPELAIQVLVQFDK              + E
Sbjct: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDK-------------SMTE 60

Query: 61  VAISDSTLSLRTSTHLSVLRQCSDI-----QDESVKNEDSSETVGRIKIVASYCHNKLL 114
              S     +    HL   R C ++     QD + KNEDS ETVGRIKIVA  C +KLL
Sbjct: 61  ALESQVKSKVTVKGHLHTYRFCDNVWTFILQDATFKNEDSQETVGRIKIVA--CDSKLL 104

[Close]

BLAST of Chy3G050230 vs. NCBI nr
Match: XP_022941425.1 (transcription initiation factor IIA subunit 2-like [Cucurbita moschata] >XP_022981079.1 transcription initiation factor IIA subunit 2-like [Cucurbita maxima] >XP_023525811.1 transcription initiation factor IIA subunit 2-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 112 bits (280), Expect = 2.19e-29
Identity = 69/119 (57.98%), Postives = 75/119 (63.03%), Query Frame = 0


Query: 1   MATFELYRRSTIEMCLTETLDEMVQNGTLSPELAIQVLVQFDKFFVFLEYGDKFIPVVRE 60
           MATFELYRRSTI MCLTETLDEMVQNGTLSPELAIQVLVQFDK              + E
Sbjct: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDK-------------SMTE 60

Query: 61  VAISDSTLSLRTSTHLSVLRQCSDI-----QDESVKNEDSSETVGRIKIVASYCHNKLL 114
              S     +    HL   R C ++     QD + KNEDS ETVGRIKIVA  C +KLL
Sbjct: 61  ALESQVKSKVTIKGHLHTYRFCDNVWTFILQDATFKNEDSQETVGRIKIVA--CDSKLL 104

[Close]

BLAST of Chy3G050230 vs. NCBI nr
Match: XP_038897043.1 (transcription initiation factor IIA subunit 2 [Benincasa hispida])

HSP 1 Score: 112 bits (280), Expect = 2.19e-29
Identity = 69/119 (57.98%), Postives = 76/119 (63.87%), Query Frame = 0


Query: 1   MATFELYRRSTIEMCLTETLDEMVQNGTLSPELAIQVLVQFDKFFVFLEYGDKFIPVVRE 60
           MATFELYRRSTI MCLTETLDEMVQNGTLSPELAIQVLVQFDK              + E
Sbjct: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDK-------------SMTE 60

Query: 61  VAISDSTLSLRTSTHLSVLRQCSDI-----QDESVKNEDSSETVGRIKIVASYCHNKLL 114
              S     +    HL   R C ++     QD + KNEDSSE+VGRIKIVA  C +KLL
Sbjct: 61  ALESQVKSKVTIKGHLHTYRFCDNVWTFILQDATFKNEDSSESVGRIKIVA--CDSKLL 104

[Close]

BLAST of Chy3G050230 vs. TAIR 10
Match: AT4G24440.1 (transcription initiation factor IIA gamma chain / TFIIA-gamma (TFIIA-S) )

HSP 1 Score: 98.6 bits (244), Expect = 3.7e-21
Identity = 62/119 (52.10%), Postives = 71/119 (59.66%), Query Frame = 0


Query: 1   MATFELYRRSTIEMCLTETLDEMVQNGTLSPELAIQVLVQFDKFFVFLEYGDKFIPVVRE 60
           MATFELYRRSTI MCLTETLDEMVQ+GTLSPELAIQVLVQFDK              + E
Sbjct: 1   MATFELYRRSTIGMCLTETLDEMVQSGTLSPELAIQVLVQFDK-------------SMTE 60

Query: 61  VAISDSTLSLRTSTHLSVLRQCSDI-----QDESVKNEDSSETVGRIKIVASYCHNKLL 115
              S     +    HL   R C ++     QD   K++D  E V R+KIVA  C +KLL
Sbjct: 61  ALESQVKTKVSIKGHLHTYRFCDNVWTFILQDAMFKSDDRQENVSRVKIVA--CDSKLL 104

[Close]

BLAST of Chy3G050230 vs. TAIR 10
Match: AT4G24440.2 (transcription initiation factor IIA gamma chain / TFIIA-gamma (TFIIA-S) )

HSP 1 Score: 98.6 bits (244), Expect = 3.7e-21
Identity = 62/119 (52.10%), Postives = 71/119 (59.66%), Query Frame = 0


Query: 1   MATFELYRRSTIEMCLTETLDEMVQNGTLSPELAIQVLVQFDKFFVFLEYGDKFIPVVRE 60
           MATFELYRRSTI MCLTETLDEMVQ+GTLSPELAIQVLVQFDK              + E
Sbjct: 1   MATFELYRRSTIGMCLTETLDEMVQSGTLSPELAIQVLVQFDK-------------SMTE 60

Query: 61  VAISDSTLSLRTSTHLSVLRQCSDI-----QDESVKNEDSSETVGRIKIVASYCHNKLL 115
              S     +    HL   R C ++     QD   K++D  E V R+KIVA  C +KLL
Sbjct: 61  ALESQVKTKVSIKGHLHTYRFCDNVWTFILQDAMFKSDDRQENVSRVKIVA--CDSKLL 104

The following BLAST results are available for this feature:

BLAST of Chy3G050230 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q39236	5.1e-20	52.10	Transcription initiation factor IIA subunit 2 OS=Arabidopsis thaliana OX=3702 GN...	[more]
A2XZI2	2.0e-19	50.42	Transcription initiation factor IIA subunit 2 OS=Oryza sativa subsp. indica OX=3...	[more]
Q0DLD3	2.0e-19	50.42	Transcription initiation factor IIA subunit 2 OS=Oryza sativa subsp. japonica OX...	[more]
Q5BB99	1.5e-06	27.83	Transcription initiation factor IIA subunit 2 OS=Emericella nidulans (strain FGS...	[more]
O74948	2.5e-06	31.48	Transcription initiation factor IIA subunit 2 OS=Schizosaccharomyces pombe (stra...	[more]

BLAST of Chy3G050230 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3B2F6	1.7e-21	58.82	Transcription initiation factor IIA subunit 2 OS=Cucumis melo OX=3656 GN=LOC1034...	[more]
A0A0A0LMF8	2.2e-21	58.82	Transcription initiation factor IIA subunit 2 OS=Cucumis sativus OX=3659 GN=Csa_...	[more]
A0A6J1F935	4.8e-21	57.98	Transcription initiation factor IIA subunit 2 OS=Cucurbita moschata OX=3662 GN=L...	[more]
A0A6J1ILT9	4.8e-21	57.98	Transcription initiation factor IIA subunit 2 OS=Cucurbita maxima OX=3661 GN=LOC...	[more]
A0A6J1J100	4.8e-21	57.98	Transcription initiation factor IIA subunit 2 OS=Cucurbita maxima OX=3661 GN=LOC...	[more]

BLAST of Chy3G050230 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008441202.1	5.39e-30	58.82	PREDICTED: transcription initiation factor IIA subunit 2 [Cucumis melo] >XP_0084...	[more]
XP_004138655.1	7.65e-30	58.82	transcription initiation factor IIA subunit 2 [Cucumis sativus] >XP_011649891.1 ...	[more]
KAG7031763.1	1.54e-29	57.98	Transcription initiation factor IIA subunit 2 [Cucurbita argyrosperma subsp. arg...	[more]
XP_022941425.1	2.19e-29	57.98	transcription initiation factor IIA subunit 2-like [Cucurbita moschata] >XP_0229...	[more]
XP_038897043.1	2.19e-29	57.98	transcription initiation factor IIA subunit 2 [Benincasa hispida]	[more]

BLAST of Chy3G050230 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G24440.1	3.7e-21	52.10	transcription initiation factor IIA gamma chain / TFIIA-gamma (TFIIA-S)	[more]
AT4G24440.2	3.7e-21	52.10	transcription initiation factor IIA gamma chain / TFIIA-gamma (TFIIA-S)	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR015872	Transcription initiation factor IIA, gamma subunit, N-terminal	PFAM	PF02268	TFIIA_gamma_N	coord: 4..44 e-value: 6.0E-17 score: 61.4
IPR015872	Transcription initiation factor IIA, gamma subunit, N-terminal	CDD	cd10145	TFIIA_gamma_N	coord: 4..43 e-value: 1.51306E-16 score: 66.05
IPR009083	Transcription factor IIA, alpha-helical domain	GENE3D	1.10.287.190		coord: 1..46 e-value: 2.8E-17 score: 64.1
None	No IPR available	PANTHER	PTHR10966:SF8	TRANSCRIPTION INITIATION FACTOR IIA SUBUNIT 2	coord: 1..114
None	No IPR available	SUPERFAMILY	47396	Transcription factor IIA (TFIIA), alpha-helical domain	coord: 3..44
IPR003194	Transcription initiation factor IIA, gamma subunit	PANTHER	PTHR10966	TRANSCRIPTION INITIATION FACTOR IIA SUBUNIT 2	coord: 1..114

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy3G050230.1	Chy3G050230.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006367	transcription initiation from RNA polymerase II promoter
cellular_component	GO:0005672	transcription factor TFIIA complex