Chy2G048570 (gene) Cucumber (hystrix) v1

Overview
NameChy2G048570
Typegene
OrganismCucumis hystrix (Cucumber (hystrix) v1)
DescriptionUnknown protein
LocationchrH02: 29129731 .. 29132954 (-)
RNA-Seq ExpressionChy2G048570
SyntenyChy2G048570
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTGGCTTCTGCACCTCAAATTTCCATTGTTACATTTCATTCAGCTGATGGCTTGAATTGAATTCAAGCAGTCAGTAGCTTTCTAAAGGAAGAGGCAAGTGATCTTCAACTTCATCCACTTTCATAAAGTCAATTACACAAGTCTCTATCCACAAAAAAGACCTGAAATTCATTCATACTCCACACCTGGAGCCGCACCCTTTTTTTTTCAACTCTATCCACGACCTCATGGATTCCACTGCTCTGGTCTGTTTGGATTCTTTCCCTTTTCCCTCTTTGGTGTAGAGATTGGATTAGCTTCTTGCATTTTAGGTTCCTACTTTATGGGTTTTCGATATTAATTGGTAGTTTAAACTGAAGCTGGCGGTAGAGTTTCTTTTCCTAGTGATTTGTTTTCTGTTAAAATTTTCAGTATGGAAAAACCCAATGAAGCTGGACATGAGAGGATTAGAGATAAGTCAGATTATTGATATAGGTATCCAAGTTCCTTCATTACTGAACACCGATGGTTTTACGTTTATCTATAACCTTCAGGTCAAGTTAGGATATGAAACCTAATCGGAGAACATTTTATCACTTGGGAAAACAATGTACATAACCGTGTCTTTTTTTCTAAAAAATTGAAATAAGCTTGTTTGTTGAAATGAGACTAACACACTAGAGATAATAAAGGAAACAAAACAGAAATAACCAACAAACAAAATCAAGTATGTTGCGGATACTTGGTAAGAGATTACAAGCTAACTATTTGAAGAAGAAAATAAAATGACTTTCTTGAATTGAATAGTCTATAAAAGTTTGAAAAGAGAAGGCTTTAACTTGAGTAATCTCTTAAGAAACTTTTTTGCTCGCGGTAGTATCTCTATGGTTAGCATTTGATGGAACTTTGTTTACATTTTCACTCAGATATACGAAATTGCATTTGTGGGGTTGATCACAATAAAAATGGACGTTTACGGTTAGAATTTGACGGAAATGGACAAGTAATATGTTGATTCTATTGTGTAATGTAACATGCTCATAAGGATGCATAATGCCTTCCCACTAGATTTTGGAGATGTAACTAGGCATAAGGCATATGGGTAATGTGTGTAATGTTGATTAATGCCTACAGACGAATGTATATTCTATTTTCTTAAACTTATATATATTCTTCTTATGGATGCTTCCAAGAAGGGGACGTGGCCCCGAACTTCAATACTTAGTTGTGGCTTTAAATCTTCAAATTGGTAAAGCTCATCGCATTCTTCTACCATGGAAGGACCTTGAAGGCATAAATAGACTATGGTCGCCCTTGTAGTCCTAGTGAACTTGTGAAGGAATCTTTAGGATAGAATATATGTTGTTCATTTCGTGAAGCTTCTATGTTATCATTTCTCATTGAATACTGTGAAAATCTCTACCATGTTATCCTTTAGAAAAACTAATGGATTCTTGTGAATGTCTTTCTTTTCTTGCATTTTAAGGGTTTCATTACAATTACAACATCCTCGAGCCTTTTATCATGGAGTCAGAGAATGAAGTTGAAGCCATGTATAGAGACTTCGAATTTTCTTGGGAAAGCTGATAGGTGTATGCTATTAAAGCAAAAGATCCAATTAAGGTAAATGCCCTTTAGTTCTGATATGAATATAAGTGGCTGGTAAACTCATGAAATCAACTTGTGCATGCCTTTTGAACTAGATTTAGGCCACTGATTAGAGAGAATAGCTAATGTAGATACATTATAACAATTTTGGGTATTGTCGATGAAAAAAATGTGGATAAAAGTATGATGTGCCGACTAATTTTGTTTCGCGTGAACATATCATTTTTGTCGACGAAAATATATAAGTGTAAAAAAAGTTATGTATTGAATAAACACATCATAGTTTTTGCCTAAAAAGATATATATGGTAAAAAAAGTTGAGTGATTTAAAGAAAAATATTTTTCAACGTTTATTTTAGTTTATAGCTAGATATGGCGATGAATATTTATATATATATACTGACATATATAAAAGGTGAACATAAGTTTTTTTTTTTTTTTTTTTAAAACTAATTTCTCAAATCCTTTATTTATTTATTCTTTTTCCCTCTCCTTTCCCTCGTTTCTCTGACACGCAGCCCTTCTTTCTTCTCACGAACGTGAACGGCCCCTTCCCCTTCCGATTTTCTTCTCGCCGGAATTTTCTTATCGCCGGACGCCCCCCAACCGCCGGAATTCTTCTCGCCGAACGCTCCCCACCCCCGGACATACGGTTGCCGAACGCCCACCACCGCCGGACTTCTTCTTGTCGAACGCCGCCACCGAATTTCTTCTTCGCGGAACGCCCCACAGGATTTCTTCTTGTCGAAAGCCGGTTTCACCCTAAACCCGTTCACTTCAACGAACGGGTCGACCACGTTCTGTCGTGCATCTCTTTATCCTAGGTGCTCTTACTTGTTACCACTTAATCTTTGCTTACTGTTTTCTTTGGATTACTAAAGAGAAGGAAAACTCGTGCATCTCTTCTTTATCCTACTACCTGAGGATACCTTTTGCTATTACTATTAGTATGAATCACAAGTTTGGCTAGGCAATTTTTTTAGATAGAAAACAAAGGAATAAAGCGTAAGTAGTAGGGTTTTACTGTCATTTACTTGCAATTTTCACAAATTCTATAAAATGTCCTTTTGAGTTTTGAATGTTTCAGTTTGTGGGGATTAATTGGAGATCTCTTGGTAATAATAATAGGCTGTCAATAAGAGCATAGTGATAATTAGCTACCGGTGCTTTGGTTATAAATAAGATAACATTGAGCCGTTCAACAAGGTTATAAATAAGATAATTAGCTACAGGTGCTTTGGTTATAAACAACTTACAAATAGTGATAATTAGCTAAAGTGTCAACATTGATCATTTTTAGAAATTTTATGTTTGGTTTAGAGTTTTTTGCCCTCAAACGTAGACTCTCTCGAATTCACTCCAATGATGAATTTTGCAGGCCTCTATCTGGCGAAGCACCCTAAGATTCACAGGAGACCCACTGCCGTTTGTTGCTAACACCTTCATTCGAGTCATCAAGTAAGTAACATTTACCTTCTCTTTCTTTTTCTTCTTAGTCTTTAATCTCTAATGATGCTAAAACCCCAATCCCATTATGACCAACCCAAAATTGTGAAAATATTGTCAAAACCTTCTTCTGTGTTTGATTTCCAGCCAGTTTTGTGTGTTTCACCAGATTCTTCCTGAAAAGTAG

mRNA sequence

ATGGGTGGCTTCTGCACCTCAAATTTCCATTTATGGAAAAACCCAATGAAGCTGGACATGAGAGGATTAGAGATAAGTCAGATTATTGATATAGGATTTCTTCTTGTCGAAAGCCGGTTTCACCCTAAACCCGTTCACTTCAACGAACGGGTCGACCACGTTCTGTCGTGCATCTCTTTATCCTAGATCTCTTGGCCTCTATCTGGCGAAGCACCCTAAGATTCACAGGAGACCCACTGCCGTTTGTTGCTAACACCTTCATTCGAGTCATCAACCAGTTTTGTGTGTTTCACCAGATTCTTCCTGAAAAGTAG

Coding sequence (CDS)

ATGGGTGGCTTCTGCACCTCAAATTTCCATTTATGGAAAAACCCAATGAAGCTGGACATGAGAGGATTAGAGATAAGTCAGATTATTGATATAGGATTTCTTCTTGTCGAAAGCCGGTTTCACCCTAAACCCGTTCACTTCAACGAACGGGTCGACCACGTTCTGTCGTGCATCTCTTTATCCTAGATCTCTTGGCCTCTATCTGGCGAAGCACCCTAAGATTCACAGGAGACCCACTGCCGTTTGTTGCTAACACCTTCATTCGAGTCATCAACCAGTTTTGTGTGTTTCACCAGATTCTTCCTGAAAAGTAG

Protein sequence

MGGFCTSNFHLWKNPMKLDMRGLEISQIIDIGFLLVESRFHPKPVHFNERVDHVLSCISLS*ISWPLSGEAP*DSQETHCRLLLTPSFESSTSFVCFTRFFLKSX
Homology
[Close]
BLAST of Chy2G048570 vs. ExPASy TrEMBL
Match: A0A0A0LNV9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G004320 PE=4 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 1.2e-23
Identity = 52/56 (92.86%), Postives = 55/56 (98.21%), Query Frame = 0 

Query: 1  MGGFCTSNFHLWKNPMKLDMRGLEISQIIDIGFLLVESRFHPKPVHFNERVDHVLS 57
          MGGFCTSNFH+WKNPMKLDMR L+ISQIID+GFLLVESRFHPKPVHFNERVDHVLS
Sbjct: 1  MGGFCTSNFHVWKNPMKLDMRVLQISQIIDMGFLLVESRFHPKPVHFNERVDHVLS 56

[Close]
BLAST of Chy2G048570 vs. NCBI nr
Match: KGN63565.1 (hypothetical protein Csa_013332 [Cucumis sativus])

HSP 1 Score: 120 bits (300), Expect = 9.88e-33
Identity = 52/56 (92.86%), Postives = 55/56 (98.21%), Query Frame = 0 

Query: 1  MGGFCTSNFHLWKNPMKLDMRGLEISQIIDIGFLLVESRFHPKPVHFNERVDHVLS 56
          MGGFCTSNFH+WKNPMKLDMR L+ISQIID+GFLLVESRFHPKPVHFNERVDHVLS
Sbjct: 1  MGGFCTSNFHVWKNPMKLDMRVLQISQIIDMGFLLVESRFHPKPVHFNERVDHVLS 56

The following BLAST results are available for this feature:
BLAST of Chy2G048570 vs.
Match NameE-valueIdentityDescription
BLAST of Chy2G048570 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LNV91.2e-2392.86Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G004320 PE=4 SV=1[more]
BLAST of Chy2G048570 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN63565.19.88e-3392.86hypothetical protein Csa_013332 [Cucumis sativus][more]
BLAST of Chy2G048570 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Chy2G048570.1Chy2G048570.1mRNA