Chy2G048560 (gene) Cucumber (hystrix) v1

Overview


Name	Chy2G048560
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	Exosome complex component RRP42-like
Location	chrH02: 29126801 .. 29129728 (-)
RNA-Seq Expression	Chy2G048560
Synteny	Chy2G048560

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGGGCCTTTCAACTGGAGAGAAGCTTTTCATTCAAGCTGGTATCGCTCAGGATCTTCGCACTGATGGTCGAGGGAGGTTAACTTATCGACCCATCTCTATAGAAACCGATGTGATCTCTCAGGTATAATATAAACAGGGTAGTAATTATGCTTTCGTTGGTTCTTGCCCTTTTTGTGGTTTAATTTCACAATGCTCTTATGTGTAGGCAAATGGTTCAGCAAAGGTCCGAATGGGTGGTACTGAAGTTATTGCCACAGTTAAGGTATGAAATGTTGAGCTTCTTTCTGTTTGAACTATGCTATTTACTACATTTTAACAGTGTCATGCTCCTGGTCTTTATTTTTTTTTTTTTTGTTTCTTTTCTTCCTTTGGGAAACTTTAAACGTTTATTTAGTATGAGAATGACTACTTAGATGTGTTGAAGTGCAGGCTGAACTTGGAAGGCCTAATCCAATGCAACCTGACAAAGGGAAGGTCTCGATCTCTGTTGATTGTAGTCCGACTGCAGAGCCGGCATTTGAGGTGGGGTAACTTGTTTTTTTTTTGTAATACATTTTGTTCATCCGTGTTTTGTACAATTTCCCGTGAATGGTTTGGTTTAAAAATTGATGTTTTCTTGGAAGCCACCGTAATTTCATTTCATTTTATGTTGGAGAATAGGAGGTAATAATAAGTGAAAAATGAATGGTTGGGCATCAACAACTAGATTGGATATTTACTAGATAGTTGTTGAGAAAATGAAATTGATAGAAAAATATTACGGTAGCAATAATTTGGGGTGAAAGAAACAATGGGCTTTTTAGGTGGATTAAGAAGTCTTAGGTCAGGTGTAATCCTTTGTTACATTTCAATCATCTCTCTAGGTTTTTATATGTAGGTTCTCTCTAGGATTCCATTTGTTCTCAATGAAAGGGTAGCTCTCCATCAATCTGGTATCCATTGCTTTAAGTCGTAGCCTTTTTTCTTTTTCATATGTACTTTTTGCTGTGCTTGTAATATTTGGGTTTTCATTGAATATAGGGTAGGGGTGGTGAAGAGTTGTCAACGGATCTCTCGATTGCTCTTGAGCGATGTCTCTTAGGTGGAAAGAGTGGTTCAGGTTTGACTCGTGATTAGAAAAACAGATCAATCATATTTGCTTCCCTTGTTTGGATCAGTAACTTTTTCACTTGCTGACAAGTGTGTTTTTGTTGCCTTAGGGGCTGGGATTGACCTTTCATCTTTGATAGTTGTGGAAGGGAAGCTTTGTTGGGATCTCTATATTGAGGGGTTGGTGTTAAGCTCAGAAGGCAATCTTCTAGACGCTCTTGGTGCTGCCATTAAGGTATATTTTCATTGTTGACTTTTGTCTACACTTCTCTTCTGTATCATTTGTTAACTTTAATAAACAAATTTTGTGCTTAATTATTTACTTTTGTCTACACTTCTCTTTTGTATCATTTACACTTTACAAGGCAGCATGACCATATAACCTTTGCTTCTTTGACCAAACTAATGTCCAATAAACGCATTTTTTATTGAGCAAAGTCAAGCTTTAAGCCTATATTTGTCTCGTTCAATTTTGAAATCTTTGCTAGGCCATTTGCATATCAAAGGTATAAAACGAGAAATTTCCTATTGAGAGTTGGCTAGTGGGATGAATTGATATGCAACTGAAGGGAACGACTAACGAGTATGGTTATATAGGCAGTGTTTACATGGGGAATGTTTTTTGTGGTTGTTTTCAGATTTTCGTCTGGTAGGGAGAGGTTACCAGCCCCATCATGAAAAAGTTTGTTAGGCTAGTGTTGCTGTCGCTATTTGTTTGTTATTAAAAAAATATATTTTTAAAAAACTATATAATTTTTATGCAAAAAAAAATTCAAATAAATGAGTTGATGCATTTATATGCTTGAAAACTTAGTTTGATATATTTCACACTCAATTTATTATAATTGCCATATATATATCTTTTCAGTTTATTCTATCCAACAAATGTTCTATGTATGTATAAGGTATTCCCTACTAATATTAGTATTAATATGAAAGAGTTGCCTGAAGGCTTGCCTTCGAGTACAAAGAGCTTATCCTCCCATTTCTCAAGACTACTTGCTAATTACCAAAAGCCTGCCCTAACTATCATCATCTTATTCAATACATAGATTGACCACTCCTCACTTCCATACAACCTTGTGGTGCTCACCATAACTAACTTTTACTTGTACTTCTCTTTTTACCTCTTCTCGAATGTTTCAGTAGAATTGGAGCCCTAACAATGTATTTAGCAAATATAATACTAACAAGTGTCCAAGTCCTTGTCATGACAAGAGCATGCTAGTCAAACTAAAGTGTTCACACTTATCAGGGGAGAGGTTACCATCTTGCTCATGTAAAAAGGCTGATATTCTAATGTTGATGTATTGGTTATCTTTGTTATTTTTTTTTTTCTTTCCATTTTTCTTGATGAAGTATAGGGATTAATTTAAAATTGAATATGATACTTTGCTTAATTTTTTAATACTTACGAAAGAAACTAATAAAACTTCAAATTGTTCTTCCCAAGGCTGCTTTGAGCAATACAGGCATCCCAAAAGTCCATGTTGCTGCAGAAGCATTAGACAACGAACAACCTGAAGTTGACGTAAGTGATGAAGAATTTCTACAGTTTGATACATCTGGGGTTCCAGCCATTGTTACATTGACAAAAGTGGGTAAGCACTACATCGTTGATGCTACTTTGGAAGAAGAATCTCAAATGAGTTCTGCAGTCTCCATATCCATCAACAGGCATGGTCACATTTGTGGGTTGACTAAACGTGGGGGTGTTGGGGTTGATCCAAGCATAATCCTCGATATGATATCCGTGGGCAAACATGTTAGTGAGGAGTTGCTGAACAAGTTGGACTCAGAGATTGTGGCTGCCGAAGCTGATGAAGAGGAATGA

mRNA sequence

ATGGTGGGCCTTTCAACTGGAGAGAAGCTTTTCATTCAAGCTGGTATCGCTCAGGATCTTCGCACTGATGGTCGAGGGAGGTTAACTTATCGACCCATCTCTATAGAAACCGATGTGATCTCTCAGGCAAATGGTTCAGCAAAGGTCCGAATGGGTGGTACTGAAGTTATTGCCACAGTTAAGGCTGAACTTGGAAGGCCTAATCCAATGCAACCTGACAAAGGGAAGGTCTCGATCTCTGTTGATTGTAGTCCGACTGCAGAGCCGGCATTTGAGGGTAGGGGTGGTGAAGAGTTGTCAACGGATCTCTCGATTGCTCTTGAGCGATGTCTCTTAGGTGGAAAGAGTGGTTCAGGGGCTGGGATTGACCTTTCATCTTTGATAGTTGTGGAAGGGAAGCTTTGTTGGGATCTCTATATTGAGGGGTTGGTGTTAAGCTCAGAAGGCAATCTTCTAGACGCTCTTGGTGCTGCCATTAAGGCTGCTTTGAGCAATACAGGCATCCCAAAAGTCCATGTTGCTGCAGAAGCATTAGACAACGAACAACCTGAAGTTGACGTAAGTGATGAAGAATTTCTACAGTTTGATACATCTGGGGTTCCAGCCATTGTTACATTGACAAAAGTGGGTAAGCACTACATCGTTGATGCTACTTTGGAAGAAGAATCTCAAATGAGTTCTGCAGTCTCCATATCCATCAACAGGCATGGTCACATTTGTGGGTTGACTAAACGTGGGGGTGTTGGGGTTGATCCAAGCATAATCCTCGATATGATATCCGTGGGCAAACATGTTAGTGAGGAGTTGCTGAACAAGTTGGACTCAGAGATTGTGGCTGCCGAAGCTGATGAAGAGGAATGA

Coding sequence (CDS)

ATGGTGGGCCTTTCAACTGGAGAGAAGCTTTTCATTCAAGCTGGTATCGCTCAGGATCTTCGCACTGATGGTCGAGGGAGGTTAACTTATCGACCCATCTCTATAGAAACCGATGTGATCTCTCAGGCAAATGGTTCAGCAAAGGTCCGAATGGGTGGTACTGAAGTTATTGCCACAGTTAAGGCTGAACTTGGAAGGCCTAATCCAATGCAACCTGACAAAGGGAAGGTCTCGATCTCTGTTGATTGTAGTCCGACTGCAGAGCCGGCATTTGAGGGTAGGGGTGGTGAAGAGTTGTCAACGGATCTCTCGATTGCTCTTGAGCGATGTCTCTTAGGTGGAAAGAGTGGTTCAGGGGCTGGGATTGACCTTTCATCTTTGATAGTTGTGGAAGGGAAGCTTTGTTGGGATCTCTATATTGAGGGGTTGGTGTTAAGCTCAGAAGGCAATCTTCTAGACGCTCTTGGTGCTGCCATTAAGGCTGCTTTGAGCAATACAGGCATCCCAAAAGTCCATGTTGCTGCAGAAGCATTAGACAACGAACAACCTGAAGTTGACGTAAGTGATGAAGAATTTCTACAGTTTGATACATCTGGGGTTCCAGCCATTGTTACATTGACAAAAGTGGGTAAGCACTACATCGTTGATGCTACTTTGGAAGAAGAATCTCAAATGAGTTCTGCAGTCTCCATATCCATCAACAGGCATGGTCACATTTGTGGGTTGACTAAACGTGGGGGTGTTGGGGTTGATCCAAGCATAATCCTCGATATGATATCCGTGGGCAAACATGTTAGTGAGGAGTTGCTGAACAAGTTGGACTCAGAGATTGTGGCTGCCGAAGCTGATGAAGAGGAATGA

Protein sequence

MVGLSTGEKLFIQAGIAQDLRTDGRGRLTYRPISIETDVISQANGSAKVRMGGTEVIATVKAELGRPNPMQPDKGKVSISVDCSPTAEPAFEGRGGEELSTDLSIALERCLLGGKSGSGAGIDLSSLIVVEGKLCWDLYIEGLVLSSEGNLLDALGAAIKAALSNTGIPKVHVAAEALDNEQPEVDVSDEEFLQFDTSGVPAIVTLTKVGKHYIVDATLEEESQMSSAVSISINRHGHICGLTKRGGVGVDPSIILDMISVGKHVSEELLNKLDSEIVAAEADEEE*

Homology

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BLAST of Chy2G048560 vs. ExPASy Swiss-Prot
Match: Q15024 (Exosome complex component RRP42 OS=Homo sapiens OX=9606 GN=EXOSC7 PE=1 SV=3)

HSP 1 Score: 203.0 bits (515), Expect = 4.6e-51
Identity = 110/283 (38.87%), Postives = 174/283 (61.48%), Query Frame = 0


Query: 2   VGLSTGEKLFIQAGIAQDLRTDGRGRLTYRPISIETDVISQANGSAKVRMGGTEVIATVK 61
           V LS  EK++I  G+ +DLR DGRG   YR + +ETDV+S  +GSA+V++G T+++  VK
Sbjct: 4   VTLSEAEKVYIVHGVQEDLRVDGRGCEDYRCVEVETDVVSNTSGSARVKLGHTDILVGVK 63

Query: 62  AELGRPNPMQPDKGKVSISVDCSPTAEPAFEGRGGEELSTDLSIALERCLLGGKSGSGAG 121
           AE+G P   +P++G +   VDCS +A P FEGRGG++L T+++  L R +   KS     
Sbjct: 64  AEMGTPKLEKPNEGYLEFFVDCSASATPEFEGRGGDDLGTEIANTLYR-IFNNKS----S 123

Query: 122 IDLSSLIVVEGKLCWDLYIEGLVLSSEGNLLDALGAAIKAALSNTGIPKVHVAAEALDNE 181
           +DL +L +   + CW LY++ L+L   GNL DA+  A+KAAL NT IP+V V  +  +  
Sbjct: 124 VDLKTLCISPREHCWVLYVDVLLLECGGNLFDAISIAVKAALFNTRIPRVRVLED--EEG 183

Query: 182 QPEVDVSDEEF--LQFDTSGVPAIVTLTKVGKHYIVDATLEEESQMSSAVSISINRHGHI 241
             ++++SD+ +  ++     VP IVTL K+G  ++VDATL+EE+   +++ +S+   G +
Sbjct: 184 SKDIELSDDPYDCIRLSVENVPCIVTLCKIGYRHVVDATLQEEACSLASLLVSVTSKGVV 243

Query: 242 CGLTKRGGVGVDPSIILDMISVGKHVSEELLNKLDSEIVAAEA 283
             + K G   +DP  I +M+  GK V + L   L S +   E+
Sbjct: 244 TCMRKVGKGSLDPESIFEMMETGKRVGKVLHASLQSVVHKEES 279

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BLAST of Chy2G048560 vs. ExPASy Swiss-Prot
Match: Q9D0M0 (Exosome complex exonuclease RRP42 OS=Mus musculus OX=10090 GN=Exosc7 PE=1 SV=2)

HSP 1 Score: 199.9 bits (507), Expect = 3.9e-50
Identity = 109/276 (39.49%), Postives = 169/276 (61.23%), Query Frame = 0


Query: 2   VGLSTGEKLFIQAGIAQDLRTDGRGRLTYRPISIETDVISQANGSAKVRMGGTEVIATVK 61
           V LS  EK++I  G+ +DLR DGRG   YR + +ETDV+S  +GSA+V++G T+++  VK
Sbjct: 4   VALSEAEKVYIVHGVQEDLRVDGRGCEDYRCVEVETDVVSNTSGSARVKLGHTDILVGVK 63

Query: 62  AELGRPNPMQPDKGKVSISVDCSPTAEPAFEGRGGEELSTDLSIALERCLLGGKSGSGAG 121
           AE+G P   +P++G +   VDCS  A P FEGRGG++L T+++  L R +   KS     
Sbjct: 64  AEMGTPKLEKPNEGYLEFFVDCSANATPEFEGRGGDDLGTEIANTLYR-IFNNKS----S 123

Query: 122 IDLSSLIVVEGKLCWDLYIEGLVLSSEGNLLDALGAAIKAALSNTGIPKVHVAAEALDNE 181
           +DL SL +   + CW LY++ L+L   GNL DA+  A+KAAL NT IP+V V  +  +  
Sbjct: 124 VDLRSLCISPREHCWVLYVDVLLLECGGNLFDAISIAVKAALFNTRIPRVRVLED--EEG 183

Query: 182 QPEVDVSDEEF--LQFDTSGVPAIVTLTKVGKHYIVDATLEEESQMSSAVSISINRHGHI 241
             ++++SD+ +  ++     VP IVTL K+G  ++VDATL+EE+   +++ +S+   G +
Sbjct: 184 AKDIELSDDPYDCIRLSVENVPCIVTLCKIGCRHVVDATLQEEACSLASLLVSVTSKGVV 243

Query: 242 CGLTKRGGVGVDPSIILDMISVGKHVSEELLNKLDS 276
             + K G   +DP  I +M+   K V + L   L S
Sbjct: 244 TCMRKVGKGSLDPESIFEMMESSKRVGKVLHVSLQS 272

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BLAST of Chy2G048560 vs. ExPASy Swiss-Prot
Match: Q54VM4 (Putative exosome complex exonuclease RRP42 OS=Dictyostelium discoideum OX=44689 GN=exosc7 PE=3 SV=1)

HSP 1 Score: 181.4 bits (459), Expect = 1.4e-44
Identity = 116/323 (35.91%), Postives = 172/323 (53.25%), Query Frame = 0


Query: 1   MVGLSTGEKLFIQAGIAQDLRTDGRGRLTYRPISIETDVISQANGSAKVRMGGTEVIATV 60
           M  +S  E LFIQ G+  ++R+DGR R+ YR  +IET  I  ANGSA+V++  TEV+  V
Sbjct: 1   MQKISPSESLFIQQGVENNIRSDGRNRVDYRNFAIETGEIIHANGSARVKLSQTEVLVGV 60

Query: 61  KAELGR------PNPMQPDKGK-VSISVDCSPTAEPAFEGRGGEELSTDLSIALERC--- 120
           KAE+         N  Q D  K +  SV+C P+A P FEG+G E L+ +LS  LER    
Sbjct: 61  KAEITHIQSEITSNLQQSDTSKRLVFSVNCCPSASPEFEGKGSEFLNIELSKQLERLYSH 120

Query: 121 ------------LLGGKSGSGAGI--------------------DLSSLIVVEGKLCWDL 180
                       ++   + +   I                    D +   +V GK  W L
Sbjct: 121 PNVIKNLKLTNPIISNNNNNNNKIKEAEEGKEKEKEGDIITNSGDDNCFSIVSGKYYWTL 180

Query: 181 YIEGLVLSSEGNLLDALGAAIKAALSNTGIPKVHVAAEALDNEQPEV--DVSD--EEFLQ 240
           Y++ +VL S+GNL DAL  A ++AL NT IP+V    +A+  E  E+  +VSD  E+ L 
Sbjct: 181 YVDAIVLDSDGNLFDALSIACRSALQNTRIPRV----KAIQGEYEEITFEVSDDPEDTLS 240

Query: 241 FDTSGVPAIVTLTKVGKHYIVDATLEEESQMSSAVSISINRHGHICGLTKRGGVGVDPSI 278
                VP  VTLTK+G  +++D TL+EE  M++ +++ +N   +IC + K G  G+DP+ 
Sbjct: 241 LSIDNVPICVTLTKIGNQFVIDTTLQEELCMNARLTVGVNSLANICSIQKGGIDGLDPTT 300

[Close]

BLAST of Chy2G048560 vs. ExPASy Swiss-Prot
Match: Q8TYC2 (Exosome complex component Rrp42 OS=Methanopyrus kandleri (strain AV19 / DSM 6324 / JCM 9639 / NBRC 100938) OX=190192 GN=rrp42 PE=3 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 3.0e-34
Identity = 91/267 (34.08%), Postives = 151/267 (56.55%), Query Frame = 0


Query: 12  IQAGIAQDLRTDGRGRLTYRPISIETDVISQANGSAKVRMGGTEVIATVKAELGRPNPMQ 71
           + A I    R DGR    +RPI +   VIS+ANGSA VR+G T+++  VK E+GRP P  
Sbjct: 14  VLAAIRAGERIDGRDFEEFRPIEVRAGVISKANGSALVRLGNTQLVVGVKLEVGRPYPDS 73

Query: 72  PDKGKVSISVDCSPTAEPAFEGRGGEELSTDLSIALERCLLGGKSGSGAGIDLSSLIVVE 131
           P++G ++++ +  P A+P+FE    +E + +LS  ++R +   +      IDL  L + E
Sbjct: 74  PNEGALAVNAELVPLADPSFEPGPPDENAIELSRVVDRGIRESEM-----IDLEELCIEE 133

Query: 132 GKLCWDLYIEGLVLSSEGNLLDALGAAIKAALSNTGIPKVHVAAEALDNEQPEVDVSDEE 191
           G+ CW  +++  VL  +GNL DA      +ALS T +PK    AE +D+   EV+V +E+
Sbjct: 134 GEHCWVTFVDIHVLDHDGNLFDASMIGSVSALSITEVPK----AEVVDD---EVEVMEED 193

Query: 192 FLQFDTSGVPAIVTLTKVGKHYIVDATLEEESQMSSAVSISINRHGHICGLTKRGGVGVD 251
                 +  P  VT+ KVG++ +VD  LEEE  M + +++++   G +C + K G +G  
Sbjct: 194 TEPLAINDFPISVTIAKVGEYLLVDPCLEEEVIMDTRLTVTVTESGEVCAVQK-GELGDF 253

Query: 252 PSIIL-DMISVGKHVSEELLNKLDSEI 278
           P  +L D I +    +EE+   + +++
Sbjct: 254 PEHLLEDAIDLATKKAEEVRRTVKAQL 267

[Close]

BLAST of Chy2G048560 vs. ExPASy Swiss-Prot
Match: O26778 (Exosome complex component Rrp42 OS=Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H) OX=187420 GN=rrp42 PE=1 SV=1)

HSP 1 Score: 142.1 bits (357), Expect = 9.6e-33
Identity = 83/257 (32.30%), Postives = 134/257 (52.14%), Query Frame = 0


Query: 21  RTDGRGRLTYRPISIETDVISQANGSAKVRMGGTEVIATVKAELGRPNPMQPDKGKVSIS 80
           R DGR    +R ISIET VIS+A GS++V++G T++I  VK ++G P P  P+ G +  +
Sbjct: 25  RIDGRSLHEFRDISIETGVISKAEGSSRVKLGNTQIIVGVKPQIGEPFPDTPEMGVILTN 84

Query: 81  VDCSPTAEPAFEGRGGEELSTDLSIALERCLLGGKSGSGAGIDLSSLIVVEGKLCWDLYI 140
            +  P A P FE    +E S +LS  ++RC+   +      IDL  L ++EG   W L++
Sbjct: 85  SELLPMASPTFEPGPPDERSVELSRVVDRCIRESRM-----IDLEKLCIIEGSKVWMLFL 144

Query: 141 EGLVLSSEGNLLDALGAAIKAALSNTGIPKVHVAAEALDNEQPEVDVSDEEFLQFDTSGV 200
           +  ++  +GNL DA   A  AAL +T IP   V       E  EV ++ E+      +  
Sbjct: 145 DLHIIDYDGNLFDAAVLATVAALLDTRIPAAEV-------EDGEVVINREKMQPLPVNRK 204

Query: 201 PAIVTLTKVGKHYIVDATLEEESQMSSAVSISINRHGHICGLTKRGGVGVDPSIILDMIS 260
             + T  K+G   ++D +LEEE  +++ +SI +   G IC + K G   +    +L  +S
Sbjct: 205 ALMCTFAKIGNEIVLDPSLEEEDILTARISIGVTEEGSICAMQKGGEGPLTRDDVLKAVS 264

Query: 261 VGKHVSEELLNKLDSEI 278
           +      +L+  LD  +
Sbjct: 265 IAVEKVPQLIEYLDKSM 269

[Close]

BLAST of Chy2G048560 vs. ExPASy TrEMBL
Match: A0A0A0LU91 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G004330 PE=4 SV=1)

HSP 1 Score: 545.4 bits (1404), Expect = 1.4e-151
Identity = 282/286 (98.60%), Postives = 286/286 (100.00%), Query Frame = 0


Query: 1   MVGLSTGEKLFIQAGIAQDLRTDGRGRLTYRPISIETDVISQANGSAKVRMGGTEVIATV 60
           MVGLSTGEKLFIQAGIAQDLRTDGRGRLTYRPISIETDVISQANGSA+VRMGGTEVIATV
Sbjct: 1   MVGLSTGEKLFIQAGIAQDLRTDGRGRLTYRPISIETDVISQANGSARVRMGGTEVIATV 60

Query: 61  KAELGRPNPMQPDKGKVSISVDCSPTAEPAFEGRGGEELSTDLSIALERCLLGGKSGSGA 120
           KAELGRPNPMQPDKGKVSISVDCSPTAEPAFEGRGGEELST+LSIALERCLLGGKSGSGA
Sbjct: 61  KAELGRPNPMQPDKGKVSISVDCSPTAEPAFEGRGGEELSTELSIALERCLLGGKSGSGA 120

Query: 121 GIDLSSLIVVEGKLCWDLYIEGLVLSSEGNLLDALGAAIKAALSNTGIPKVHVAAEALDN 180
           GIDLSSLIVVEGKLCWDLYIEGLV+SSEGNLLDALGAAIKAALSNTGIPKVHVAAEALDN
Sbjct: 121 GIDLSSLIVVEGKLCWDLYIEGLVVSSEGNLLDALGAAIKAALSNTGIPKVHVAAEALDN 180

Query: 181 EQPEVDVSDEEFLQFDTSGVPAIVTLTKVGKHYIVDATLEEESQMSSAVSISINRHGHIC 240
           EQPEVDVSDEEFLQFDTSGVPAIVTLTKVGKHYIVDATLEEESQMSSAVSISI+RHGHIC
Sbjct: 181 EQPEVDVSDEEFLQFDTSGVPAIVTLTKVGKHYIVDATLEEESQMSSAVSISIDRHGHIC 240

Query: 241 GLTKRGGVGVDPSIILDMISVGKHVSEELLNKLDSEIVAAEADEEE 287
           GLTKRGGVGVDPSIILDMISVGKHVSEELLNKLDSEIVAAEADEEE
Sbjct: 241 GLTKRGGVGVDPSIILDMISVGKHVSEELLNKLDSEIVAAEADEEE 286

[Close]

BLAST of Chy2G048560 vs. ExPASy TrEMBL
Match: A0A1S3B3T5 (exosome complex component RRP42-like OS=Cucumis melo OX=3656 GN=LOC103485450 PE=4 SV=1)

HSP 1 Score: 528.5 bits (1360), Expect = 1.8e-146
Identity = 272/286 (95.10%), Postives = 281/286 (98.25%), Query Frame = 0


Query: 1   MVGLSTGEKLFIQAGIAQDLRTDGRGRLTYRPISIETDVISQANGSAKVRMGGTEVIATV 60
           MVGLSTGEKLFIQAGIAQDLRTDGRGRLTYRPISIETDVISQANGSA+VRMGGTEVIATV
Sbjct: 1   MVGLSTGEKLFIQAGIAQDLRTDGRGRLTYRPISIETDVISQANGSARVRMGGTEVIATV 60

Query: 61  KAELGRPNPMQPDKGKVSISVDCSPTAEPAFEGRGGEELSTDLSIALERCLLGGKSGSGA 120
           KAELGRPNPMQ +KGKVSISVDCSP AEPAFEGRGGEELST+LS+ALERCLLGGKSGSGA
Sbjct: 61  KAELGRPNPMQSNKGKVSISVDCSPIAEPAFEGRGGEELSTELSVALERCLLGGKSGSGA 120

Query: 121 GIDLSSLIVVEGKLCWDLYIEGLVLSSEGNLLDALGAAIKAALSNTGIPKVHVAAEALDN 180
           GIDLSSLIVVEGKLCWDLYIEGLVLSSEGNLLDALGAAIKAALSNTGIPKVH+AAEA  N
Sbjct: 121 GIDLSSLIVVEGKLCWDLYIEGLVLSSEGNLLDALGAAIKAALSNTGIPKVHIAAEASGN 180

Query: 181 EQPEVDVSDEEFLQFDTSGVPAIVTLTKVGKHYIVDATLEEESQMSSAVSISINRHGHIC 240
           EQPEVDVSDEEF+QF+TSGVPAIVTLTKVGKHYI+DATLEEESQMSSAVSISINRHGHIC
Sbjct: 181 EQPEVDVSDEEFIQFETSGVPAIVTLTKVGKHYIIDATLEEESQMSSAVSISINRHGHIC 240

Query: 241 GLTKRGGVGVDPSIILDMISVGKHVSEELLNKLDSEIVAAEADEEE 287
           GLTKRGGVGVDPSIILDMISVGK+VSEELLNKLDSEIVAAE DEEE
Sbjct: 241 GLTKRGGVGVDPSIILDMISVGKNVSEELLNKLDSEIVAAEVDEEE 286

[Close]

BLAST of Chy2G048560 vs. ExPASy TrEMBL
Match: A0A5A7SRK6 (Exosome complex component RRP42-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold453G001860 PE=4 SV=1)

HSP 1 Score: 528.5 bits (1360), Expect = 1.8e-146
Identity = 272/286 (95.10%), Postives = 281/286 (98.25%), Query Frame = 0


Query: 1   MVGLSTGEKLFIQAGIAQDLRTDGRGRLTYRPISIETDVISQANGSAKVRMGGTEVIATV 60
           MVGLSTGEKLFIQAGIAQDLRTDGRGRLTYRPISIETDVISQANGSA+VRMGGTEVIATV
Sbjct: 1   MVGLSTGEKLFIQAGIAQDLRTDGRGRLTYRPISIETDVISQANGSARVRMGGTEVIATV 60

Query: 61  KAELGRPNPMQPDKGKVSISVDCSPTAEPAFEGRGGEELSTDLSIALERCLLGGKSGSGA 120
           KAELGRPNPMQ +KGKVSISVDCSP AEPAFEGRGGEELST+LS+ALERCLLGGKSGSGA
Sbjct: 61  KAELGRPNPMQSNKGKVSISVDCSPIAEPAFEGRGGEELSTELSVALERCLLGGKSGSGA 120

Query: 121 GIDLSSLIVVEGKLCWDLYIEGLVLSSEGNLLDALGAAIKAALSNTGIPKVHVAAEALDN 180
           GIDLSSLIVVEGKLCWDLYIEGLVLSSEGNLLDALGAAIKAALSNTGIPKVH+AAEA  N
Sbjct: 121 GIDLSSLIVVEGKLCWDLYIEGLVLSSEGNLLDALGAAIKAALSNTGIPKVHIAAEASGN 180

Query: 181 EQPEVDVSDEEFLQFDTSGVPAIVTLTKVGKHYIVDATLEEESQMSSAVSISINRHGHIC 240
           EQPEVDVSDEEF+QF+TSGVPAIVTLTKVGKHYI+DATLEEESQMSSAVSISINRHGHIC
Sbjct: 181 EQPEVDVSDEEFIQFETSGVPAIVTLTKVGKHYIIDATLEEESQMSSAVSISINRHGHIC 240

Query: 241 GLTKRGGVGVDPSIILDMISVGKHVSEELLNKLDSEIVAAEADEEE 287
           GLTKRGGVGVDPSIILDMISVGK+VSEELLNKLDSEIVAAE DEEE
Sbjct: 241 GLTKRGGVGVDPSIILDMISVGKNVSEELLNKLDSEIVAAEVDEEE 286

[Close]

BLAST of Chy2G048560 vs. ExPASy TrEMBL
Match: A0A6J1EQ99 (exosome complex component RRP42 OS=Cucurbita moschata OX=3662 GN=LOC111434693 PE=4 SV=1)

HSP 1 Score: 508.1 bits (1307), Expect = 2.5e-140
Identity = 257/286 (89.86%), Postives = 273/286 (95.45%), Query Frame = 0


Query: 1   MVGLSTGEKLFIQAGIAQDLRTDGRGRLTYRPISIETDVISQANGSAKVRMGGTEVIATV 60
           M GLS GEKLFIQ GIAQDLRTDGR RLTYRPIS+ETDVISQANGSA+VRMGGTEVIATV
Sbjct: 1   MKGLSVGEKLFIQGGIAQDLRTDGRRRLTYRPISVETDVISQANGSARVRMGGTEVIATV 60

Query: 61  KAELGRPNPMQPDKGKVSISVDCSPTAEPAFEGRGGEELSTDLSIALERCLLGGKSGSGA 120
           KAELGRPN MQPDKGKVSI VDCSPTAEP FEGRGGEEL+T+LS+ALERCLLGGKSG+GA
Sbjct: 61  KAELGRPNAMQPDKGKVSIFVDCSPTAEPTFEGRGGEELATELSVALERCLLGGKSGAGA 120

Query: 121 GIDLSSLIVVEGKLCWDLYIEGLVLSSEGNLLDALGAAIKAALSNTGIPKVHVAAEALDN 180
           GIDLSSLIVVEGKLCWDLYIEGLV+SS+GNLLDALGAAIKAALSNTGIPKV+V+ EA  N
Sbjct: 121 GIDLSSLIVVEGKLCWDLYIEGLVVSSDGNLLDALGAAIKAALSNTGIPKVNVSVEASAN 180

Query: 181 EQPEVDVSDEEFLQFDTSGVPAIVTLTKVGKHYIVDATLEEESQMSSAVSISINRHGHIC 240
           EQPEVDVSDEEFLQFDTSGVP IVTLTKVG+HYIVDATLEEESQMSSA+SIS+NRHGH+C
Sbjct: 181 EQPEVDVSDEEFLQFDTSGVPVIVTLTKVGRHYIVDATLEEESQMSSAISISVNRHGHVC 240

Query: 241 GLTKRGGVGVDPSIILDMISVGKHVSEELLNKLDSEIVAAEADEEE 287
           GLTKRGG GVDPS+ILDMISVGKHVSE+LLNKLDSEI AAEADEEE
Sbjct: 241 GLTKRGGAGVDPSVILDMISVGKHVSEQLLNKLDSEIAAAEADEEE 286

[Close]

BLAST of Chy2G048560 vs. ExPASy TrEMBL
Match: A0A6J1JIH0 (exosome complex component RRP42 OS=Cucurbita maxima OX=3661 GN=LOC111486098 PE=4 SV=1)

HSP 1 Score: 503.8 bits (1296), Expect = 4.7e-139
Identity = 255/286 (89.16%), Postives = 273/286 (95.45%), Query Frame = 0


Query: 1   MVGLSTGEKLFIQAGIAQDLRTDGRGRLTYRPISIETDVISQANGSAKVRMGGTEVIATV 60
           M GLS GEKLFI+ GIAQDLRTDGR RLTYRPIS+ETDVISQANGSA+VRMGGTEVIATV
Sbjct: 1   MKGLSVGEKLFIEGGIAQDLRTDGRRRLTYRPISVETDVISQANGSARVRMGGTEVIATV 60

Query: 61  KAELGRPNPMQPDKGKVSISVDCSPTAEPAFEGRGGEELSTDLSIALERCLLGGKSGSGA 120
           KAELGRPN MQPDKGKVSI VDCSPTAEP FEGRGGEEL+T+LS++LERCLLGGKSG+GA
Sbjct: 61  KAELGRPNAMQPDKGKVSIFVDCSPTAEPTFEGRGGEELATELSVSLERCLLGGKSGAGA 120

Query: 121 GIDLSSLIVVEGKLCWDLYIEGLVLSSEGNLLDALGAAIKAALSNTGIPKVHVAAEALDN 180
           GIDLSSLIVVEGKLCWDLYIEGLV+SS+GNLLDALGAAIKAALSNTGIPKV+V+AEA  N
Sbjct: 121 GIDLSSLIVVEGKLCWDLYIEGLVVSSDGNLLDALGAAIKAALSNTGIPKVNVSAEASAN 180

Query: 181 EQPEVDVSDEEFLQFDTSGVPAIVTLTKVGKHYIVDATLEEESQMSSAVSISINRHGHIC 240
           EQPEVDVSDEEFLQFDTSGVP IVTLTKVG+HYIVDATLEEESQMSSA+SIS+NRH H+C
Sbjct: 181 EQPEVDVSDEEFLQFDTSGVPVIVTLTKVGRHYIVDATLEEESQMSSAISISVNRHCHVC 240

Query: 241 GLTKRGGVGVDPSIILDMISVGKHVSEELLNKLDSEIVAAEADEEE 287
           GLTKRGG GVDPS+ILDMISVGKHVSE+LLNKLDSEI AAEADEEE
Sbjct: 241 GLTKRGGAGVDPSVILDMISVGKHVSEQLLNKLDSEIAAAEADEEE 286

[Close]

BLAST of Chy2G048560 vs. NCBI nr
Match: XP_004151651.2 (exosome complex component RRP42 [Cucumis sativus] >XP_011656293.1 exosome complex component RRP42 [Cucumis sativus] >XP_011656329.1 exosome complex component RRP42 [Cucumis sativus] >XP_031737840.1 exosome complex component RRP42 [Cucumis sativus] >KGN63566.1 hypothetical protein Csa_013213 [Cucumis sativus])

HSP 1 Score: 545 bits (1404), Expect = 4.80e-195
Identity = 282/286 (98.60%), Postives = 286/286 (100.00%), Query Frame = 0


Query: 1   MVGLSTGEKLFIQAGIAQDLRTDGRGRLTYRPISIETDVISQANGSAKVRMGGTEVIATV 60
           MVGLSTGEKLFIQAGIAQDLRTDGRGRLTYRPISIETDVISQANGSA+VRMGGTEVIATV
Sbjct: 1   MVGLSTGEKLFIQAGIAQDLRTDGRGRLTYRPISIETDVISQANGSARVRMGGTEVIATV 60

Query: 61  KAELGRPNPMQPDKGKVSISVDCSPTAEPAFEGRGGEELSTDLSIALERCLLGGKSGSGA 120
           KAELGRPNPMQPDKGKVSISVDCSPTAEPAFEGRGGEELST+LSIALERCLLGGKSGSGA
Sbjct: 61  KAELGRPNPMQPDKGKVSISVDCSPTAEPAFEGRGGEELSTELSIALERCLLGGKSGSGA 120

Query: 121 GIDLSSLIVVEGKLCWDLYIEGLVLSSEGNLLDALGAAIKAALSNTGIPKVHVAAEALDN 180
           GIDLSSLIVVEGKLCWDLYIEGLV+SSEGNLLDALGAAIKAALSNTGIPKVHVAAEALDN
Sbjct: 121 GIDLSSLIVVEGKLCWDLYIEGLVVSSEGNLLDALGAAIKAALSNTGIPKVHVAAEALDN 180

Query: 181 EQPEVDVSDEEFLQFDTSGVPAIVTLTKVGKHYIVDATLEEESQMSSAVSISINRHGHIC 240
           EQPEVDVSDEEFLQFDTSGVPAIVTLTKVGKHYIVDATLEEESQMSSAVSISI+RHGHIC
Sbjct: 181 EQPEVDVSDEEFLQFDTSGVPAIVTLTKVGKHYIVDATLEEESQMSSAVSISIDRHGHIC 240

Query: 241 GLTKRGGVGVDPSIILDMISVGKHVSEELLNKLDSEIVAAEADEEE 286
           GLTKRGGVGVDPSIILDMISVGKHVSEELLNKLDSEIVAAEADEEE
Sbjct: 241 GLTKRGGVGVDPSIILDMISVGKHVSEELLNKLDSEIVAAEADEEE 286

[Close]

BLAST of Chy2G048560 vs. NCBI nr
Match: XP_008441268.1 (PREDICTED: exosome complex component RRP42-like [Cucumis melo] >XP_008441269.1 PREDICTED: exosome complex component RRP42-like [Cucumis melo] >XP_008441270.1 PREDICTED: exosome complex component RRP42-like [Cucumis melo] >XP_016899428.1 PREDICTED: exosome complex component RRP42-like [Cucumis melo] >XP_016899429.1 PREDICTED: exosome complex component RRP42-like [Cucumis melo] >XP_016899430.1 PREDICTED: exosome complex component RRP42-like [Cucumis melo] >XP_016899431.1 PREDICTED: exosome complex component RRP42-like [Cucumis melo] >XP_016899432.1 PREDICTED: exosome complex component RRP42-like [Cucumis melo] >KAA0031919.1 exosome complex component RRP42-like [Cucumis melo var. makuwa] >TYK06691.1 exosome complex component RRP42-like [Cucumis melo var. makuwa])

HSP 1 Score: 528 bits (1360), Expect = 2.44e-188
Identity = 272/286 (95.10%), Postives = 281/286 (98.25%), Query Frame = 0


Query: 1   MVGLSTGEKLFIQAGIAQDLRTDGRGRLTYRPISIETDVISQANGSAKVRMGGTEVIATV 60
           MVGLSTGEKLFIQAGIAQDLRTDGRGRLTYRPISIETDVISQANGSA+VRMGGTEVIATV
Sbjct: 1   MVGLSTGEKLFIQAGIAQDLRTDGRGRLTYRPISIETDVISQANGSARVRMGGTEVIATV 60

Query: 61  KAELGRPNPMQPDKGKVSISVDCSPTAEPAFEGRGGEELSTDLSIALERCLLGGKSGSGA 120
           KAELGRPNPMQ +KGKVSISVDCSP AEPAFEGRGGEELST+LS+ALERCLLGGKSGSGA
Sbjct: 61  KAELGRPNPMQSNKGKVSISVDCSPIAEPAFEGRGGEELSTELSVALERCLLGGKSGSGA 120

Query: 121 GIDLSSLIVVEGKLCWDLYIEGLVLSSEGNLLDALGAAIKAALSNTGIPKVHVAAEALDN 180
           GIDLSSLIVVEGKLCWDLYIEGLVLSSEGNLLDALGAAIKAALSNTGIPKVH+AAEA  N
Sbjct: 121 GIDLSSLIVVEGKLCWDLYIEGLVLSSEGNLLDALGAAIKAALSNTGIPKVHIAAEASGN 180

Query: 181 EQPEVDVSDEEFLQFDTSGVPAIVTLTKVGKHYIVDATLEEESQMSSAVSISINRHGHIC 240
           EQPEVDVSDEEF+QF+TSGVPAIVTLTKVGKHYI+DATLEEESQMSSAVSISINRHGHIC
Sbjct: 181 EQPEVDVSDEEFIQFETSGVPAIVTLTKVGKHYIIDATLEEESQMSSAVSISINRHGHIC 240

Query: 241 GLTKRGGVGVDPSIILDMISVGKHVSEELLNKLDSEIVAAEADEEE 286
           GLTKRGGVGVDPSIILDMISVGK+VSEELLNKLDSEIVAAE DEEE
Sbjct: 241 GLTKRGGVGVDPSIILDMISVGKNVSEELLNKLDSEIVAAEVDEEE 286

[Close]

BLAST of Chy2G048560 vs. NCBI nr
Match: XP_038891978.1 (exosome complex component RRP42 isoform X1 [Benincasa hispida] >XP_038891979.1 exosome complex component RRP42 isoform X1 [Benincasa hispida] >XP_038891980.1 exosome complex component RRP42 isoform X1 [Benincasa hispida] >XP_038891981.1 exosome complex component RRP42 isoform X1 [Benincasa hispida] >XP_038891982.1 exosome complex component RRP42 isoform X1 [Benincasa hispida] >XP_038891983.1 exosome complex component RRP42 isoform X1 [Benincasa hispida] >XP_038891984.1 exosome complex component RRP42 isoform X1 [Benincasa hispida] >XP_038891985.1 exosome complex component RRP42 isoform X1 [Benincasa hispida] >XP_038891986.1 exosome complex component RRP42 isoform X1 [Benincasa hispida] >XP_038891987.1 exosome complex component RRP42 isoform X1 [Benincasa hispida])

HSP 1 Score: 522 bits (1344), Expect = 6.70e-186
Identity = 266/286 (93.01%), Postives = 279/286 (97.55%), Query Frame = 0


Query: 1   MVGLSTGEKLFIQAGIAQDLRTDGRGRLTYRPISIETDVISQANGSAKVRMGGTEVIATV 60
           MVGLS GEKLFIQ GIAQDLRTDGRGRLTYRPIS+ETDVISQANGSA+VRMGGTEVIATV
Sbjct: 1   MVGLSIGEKLFIQGGIAQDLRTDGRGRLTYRPISVETDVISQANGSARVRMGGTEVIATV 60

Query: 61  KAELGRPNPMQPDKGKVSISVDCSPTAEPAFEGRGGEELSTDLSIALERCLLGGKSGSGA 120
           KAELGRPNPMQPDKGKVSISVDCSP AEPAFEGRGGEELST+LS+AL+RCLLGGKSGSGA
Sbjct: 61  KAELGRPNPMQPDKGKVSISVDCSPIAEPAFEGRGGEELSTELSVALDRCLLGGKSGSGA 120

Query: 121 GIDLSSLIVVEGKLCWDLYIEGLVLSSEGNLLDALGAAIKAALSNTGIPKVHVAAEALDN 180
            IDLSSLIVVEGKLCWDLYIEGLV+SSEGNLLDALGAAIKAALS+TGIPKVHVAAE+  N
Sbjct: 121 AIDLSSLIVVEGKLCWDLYIEGLVISSEGNLLDALGAAIKAALSSTGIPKVHVAAESSAN 180

Query: 181 EQPEVDVSDEEFLQFDTSGVPAIVTLTKVGKHYIVDATLEEESQMSSAVSISINRHGHIC 240
           EQPEVDVSDEEFLQFDTSGVPAIVTLTKVGKHYI+DATLEEESQMSSAVSIS+NRHGHIC
Sbjct: 181 EQPEVDVSDEEFLQFDTSGVPAIVTLTKVGKHYIIDATLEEESQMSSAVSISVNRHGHIC 240

Query: 241 GLTKRGGVGVDPSIILDMISVGKHVSEELLNKLDSEIVAAEADEEE 286
           GLTKRGG G+DPSIILDMISVGKHVSEELL+KLDSEIVAA+ADEEE
Sbjct: 241 GLTKRGGAGLDPSIILDMISVGKHVSEELLDKLDSEIVAAQADEEE 286

[Close]

BLAST of Chy2G048560 vs. NCBI nr
Match: XP_023529361.1 (exosome complex component RRP42 [Cucurbita pepo subsp. pepo] >XP_023529362.1 exosome complex component RRP42 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 509 bits (1311), Expect = 7.16e-181
Identity = 258/286 (90.21%), Postives = 274/286 (95.80%), Query Frame = 0


Query: 1   MVGLSTGEKLFIQAGIAQDLRTDGRGRLTYRPISIETDVISQANGSAKVRMGGTEVIATV 60
           M GLS GEKLFIQ GIAQDLRTDGR RLTYRPIS+ETDVISQANGSA+VRMGGTEVIATV
Sbjct: 1   MKGLSVGEKLFIQGGIAQDLRTDGRRRLTYRPISVETDVISQANGSARVRMGGTEVIATV 60

Query: 61  KAELGRPNPMQPDKGKVSISVDCSPTAEPAFEGRGGEELSTDLSIALERCLLGGKSGSGA 120
           KAELGRPN MQPDKGKVSI VDCSPTAEP FEGRGGEEL+T+LS+ALERCLLGGKSG+GA
Sbjct: 61  KAELGRPNAMQPDKGKVSIFVDCSPTAEPTFEGRGGEELATELSVALERCLLGGKSGAGA 120

Query: 121 GIDLSSLIVVEGKLCWDLYIEGLVLSSEGNLLDALGAAIKAALSNTGIPKVHVAAEALDN 180
           GIDLSSLIVVEGKLCWDLYIEGLV+SS+GNLLDALGAAIKAALSNTGIPKV+V+AEA  N
Sbjct: 121 GIDLSSLIVVEGKLCWDLYIEGLVVSSDGNLLDALGAAIKAALSNTGIPKVNVSAEASAN 180

Query: 181 EQPEVDVSDEEFLQFDTSGVPAIVTLTKVGKHYIVDATLEEESQMSSAVSISINRHGHIC 240
           EQPEVDVSDEEFLQFDTSGVP IVTLTKVG+HYIVDATLEEESQMSSA+SIS+NRHGH+C
Sbjct: 181 EQPEVDVSDEEFLQFDTSGVPVIVTLTKVGRHYIVDATLEEESQMSSAISISVNRHGHVC 240

Query: 241 GLTKRGGVGVDPSIILDMISVGKHVSEELLNKLDSEIVAAEADEEE 286
           GLTKRGG GVDPS+ILDMISVGKHVSE+LLNKLDSEI AAEADEEE
Sbjct: 241 GLTKRGGAGVDPSVILDMISVGKHVSEQLLNKLDSEIAAAEADEEE 286

[Close]

BLAST of Chy2G048560 vs. NCBI nr
Match: XP_022927940.1 (exosome complex component RRP42 [Cucurbita moschata] >XP_022927941.1 exosome complex component RRP42 [Cucurbita moschata])

HSP 1 Score: 508 bits (1307), Expect = 2.91e-180
Identity = 257/286 (89.86%), Postives = 273/286 (95.45%), Query Frame = 0


Query: 1   MVGLSTGEKLFIQAGIAQDLRTDGRGRLTYRPISIETDVISQANGSAKVRMGGTEVIATV 60
           M GLS GEKLFIQ GIAQDLRTDGR RLTYRPIS+ETDVISQANGSA+VRMGGTEVIATV
Sbjct: 1   MKGLSVGEKLFIQGGIAQDLRTDGRRRLTYRPISVETDVISQANGSARVRMGGTEVIATV 60

Query: 61  KAELGRPNPMQPDKGKVSISVDCSPTAEPAFEGRGGEELSTDLSIALERCLLGGKSGSGA 120
           KAELGRPN MQPDKGKVSI VDCSPTAEP FEGRGGEEL+T+LS+ALERCLLGGKSG+GA
Sbjct: 61  KAELGRPNAMQPDKGKVSIFVDCSPTAEPTFEGRGGEELATELSVALERCLLGGKSGAGA 120

Query: 121 GIDLSSLIVVEGKLCWDLYIEGLVLSSEGNLLDALGAAIKAALSNTGIPKVHVAAEALDN 180
           GIDLSSLIVVEGKLCWDLYIEGLV+SS+GNLLDALGAAIKAALSNTGIPKV+V+ EA  N
Sbjct: 121 GIDLSSLIVVEGKLCWDLYIEGLVVSSDGNLLDALGAAIKAALSNTGIPKVNVSVEASAN 180

Query: 181 EQPEVDVSDEEFLQFDTSGVPAIVTLTKVGKHYIVDATLEEESQMSSAVSISINRHGHIC 240
           EQPEVDVSDEEFLQFDTSGVP IVTLTKVG+HYIVDATLEEESQMSSA+SIS+NRHGH+C
Sbjct: 181 EQPEVDVSDEEFLQFDTSGVPVIVTLTKVGRHYIVDATLEEESQMSSAISISVNRHGHVC 240

Query: 241 GLTKRGGVGVDPSIILDMISVGKHVSEELLNKLDSEIVAAEADEEE 286
           GLTKRGG GVDPS+ILDMISVGKHVSE+LLNKLDSEI AAEADEEE
Sbjct: 241 GLTKRGGAGVDPSVILDMISVGKHVSEQLLNKLDSEIAAAEADEEE 286

[Close]

BLAST of Chy2G048560 vs. TAIR 10
Match: AT3G07750.1 (3'-5'-exoribonuclease family protein )

HSP 1 Score: 441.8 bits (1135), Expect = 4.2e-124
Identity = 218/285 (76.49%), Postives = 259/285 (90.88%), Query Frame = 0


Query: 2   VGLSTGEKLFIQAGIAQDLRTDGRGRLTYRPISIETDVISQANGSAKVRMGGTEVIATVK 61
           +GLS GE+ FI+ GIAQDLRTDGR RLTYRPI +ET VI QANGSA+VR+GGT+VIA+VK
Sbjct: 1   MGLSLGEQHFIKGGIAQDLRTDGRKRLTYRPIYVETGVIPQANGSARVRIGGTDVIASVK 60

Query: 62  AELGRPNPMQPDKGKVSISVDCSPTAEPAFEGRGGEELSTDLSIALERCLLGGKSGSGAG 121
           AE+GRP+ +QPDKGKV++ +DCSPTAEP F GRGGEELS++L++AL+RCLLGGKSG+GAG
Sbjct: 61  AEIGRPSSLQPDKGKVAVFIDCSPTAEPTFGGRGGEELSSELALALQRCLLGGKSGAGAG 120

Query: 122 IDLSSLIVVEGKLCWDLYIEGLVLSSEGNLLDALGAAIKAALSNTGIPKVHVAAEALDNE 181
           I+LSSL++ EGK+CWDLYI+GLV+SS+GNLLDALGAAIKAAL+NT IPKV+V+AE  D+E
Sbjct: 121 INLSSLLIKEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALTNTAIPKVNVSAEVADDE 180

Query: 182 QPEVDVSDEEFLQFDTSGVPAIVTLTKVGKHYIVDATLEEESQMSSAVSISINRHGHICG 241
           QPE+D+SDEE+LQFDTS VP IVTLTKVG HYIVDAT EEESQMSSAVSIS+NR GHICG
Sbjct: 181 QPEIDISDEEYLQFDTSSVPVIVTLTKVGTHYIVDATAEEESQMSSAVSISVNRTGHICG 240

Query: 242 LTKRGGVGVDPSIILDMISVGKHVSEELLNKLDSEIVAAEADEEE 287
           LTKR G G+DPS+ILDMISV KHV+E L++KLDSEI AAEA E+E
Sbjct: 241 LTKRSGSGLDPSVILDMISVAKHVTETLMSKLDSEISAAEACEDE 285

[Close]

BLAST of Chy2G048560 vs. TAIR 10
Match: AT3G07750.2 (3'-5'-exoribonuclease family protein )

HSP 1 Score: 441.8 bits (1135), Expect = 4.2e-124
Identity = 218/285 (76.49%), Postives = 259/285 (90.88%), Query Frame = 0


Query: 2   VGLSTGEKLFIQAGIAQDLRTDGRGRLTYRPISIETDVISQANGSAKVRMGGTEVIATVK 61
           +GLS GE+ FI+ GIAQDLRTDGR RLTYRPI +ET VI QANGSA+VR+GGT+VIA+VK
Sbjct: 1   MGLSLGEQHFIKGGIAQDLRTDGRKRLTYRPIYVETGVIPQANGSARVRIGGTDVIASVK 60

Query: 62  AELGRPNPMQPDKGKVSISVDCSPTAEPAFEGRGGEELSTDLSIALERCLLGGKSGSGAG 121
           AE+GRP+ +QPDKGKV++ +DCSPTAEP F GRGGEELS++L++AL+RCLLGGKSG+GAG
Sbjct: 61  AEIGRPSSLQPDKGKVAVFIDCSPTAEPTFGGRGGEELSSELALALQRCLLGGKSGAGAG 120

Query: 122 IDLSSLIVVEGKLCWDLYIEGLVLSSEGNLLDALGAAIKAALSNTGIPKVHVAAEALDNE 181
           I+LSSL++ EGK+CWDLYI+GLV+SS+GNLLDALGAAIKAAL+NT IPKV+V+AE  D+E
Sbjct: 121 INLSSLLIKEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALTNTAIPKVNVSAEVADDE 180

Query: 182 QPEVDVSDEEFLQFDTSGVPAIVTLTKVGKHYIVDATLEEESQMSSAVSISINRHGHICG 241
           QPE+D+SDEE+LQFDTS VP IVTLTKVG HYIVDAT EEESQMSSAVSIS+NR GHICG
Sbjct: 181 QPEIDISDEEYLQFDTSSVPVIVTLTKVGTHYIVDATAEEESQMSSAVSISVNRTGHICG 240

Query: 242 LTKRGGVGVDPSIILDMISVGKHVSEELLNKLDSEIVAAEADEEE 287
           LTKR G G+DPS+ILDMISV KHV+E L++KLDSEI AAEA E+E
Sbjct: 241 LTKRSGSGLDPSVILDMISVAKHVTETLMSKLDSEISAAEACEDE 285

[Close]

BLAST of Chy2G048560 vs. TAIR 10
Match: AT3G12990.1 (ribonuclease PH45A )

HSP 1 Score: 120.6 bits (301), Expect = 2.1e-27
Identity = 82/257 (31.91%), Postives = 132/257 (51.36%), Query Frame = 0


Query: 4   LSTGEKLFIQAGIAQDLRTDGRGRLTYRPISIETDVISQANGSAKVRMGGTEVIATVKAE 63
           L+  E  F+++ +  +LR DGRG   YR ++I+     +  GS++V++G T V+A V A+
Sbjct: 11  LTVNESKFVESALQSELRVDGRGLYDYRKLTIK---FGKEYGSSQVQLGQTHVMAFVTAQ 70

Query: 64  LGRPNPMQPDKGKVSISVDCSPTAEPAFEGRGGEELSTDLSIALERCLLGGKSGSGAGID 123
           L +P   +P +G  SI  + SP A+P+FE     E + +L   ++R L   ++     +D
Sbjct: 71  LVQPYKDRPSEGSFSIFTEFSPMADPSFEPGHPGESAVELGRIIDRALRESRA-----VD 130

Query: 124 LSSLIVVEGKLCWDLYIEGLVLSSEGNLLDALGAAIKAALSNTGIPKVHVAAEALDNEQP 183
             SL V+ GKL W + I+  +L + GNL+DA   A  AAL     P   V     DN Q 
Sbjct: 131 TESLCVLAGKLVWSVRIDLHILDNGGNLVDAANVAALAALMTFRRPDCTVGG---DNSQD 190

Query: 184 EV--DVSDEEFLQFDTSGVPAIVT--LTKVGKHYIVDATLEEESQMSSAVSISINRHGHI 243
            +     + E L      +P   T      G   ++D T  EE+ M   +++++N +G I
Sbjct: 191 VIIHPPEEREPLPLIIHHLPIAFTFGFFNKGSILVMDPTYVEEAVMCGRMTVTVNANGDI 250

Query: 244 CGLTKRGGVGVDPSIIL 257
           C + K G  GV+ S+IL
Sbjct: 251 CAIQKPGEEGVNQSVIL 256

[Close]

BLAST of Chy2G048560 vs. TAIR 10
Match: AT3G12990.2 (ribonuclease PH45A )

HSP 1 Score: 120.6 bits (301), Expect = 2.1e-27
Identity = 82/257 (31.91%), Postives = 132/257 (51.36%), Query Frame = 0


Query: 4   LSTGEKLFIQAGIAQDLRTDGRGRLTYRPISIETDVISQANGSAKVRMGGTEVIATVKAE 63
           L+  E  F+++ +  +LR DGRG   YR ++I+     +  GS++V++G T V+A V A+
Sbjct: 11  LTVNESKFVESALQSELRVDGRGLYDYRKLTIK---FGKEYGSSQVQLGQTHVMAFVTAQ 70

Query: 64  LGRPNPMQPDKGKVSISVDCSPTAEPAFEGRGGEELSTDLSIALERCLLGGKSGSGAGID 123
           L +P   +P +G  SI  + SP A+P+FE     E + +L   ++R L   ++     +D
Sbjct: 71  LVQPYKDRPSEGSFSIFTEFSPMADPSFEPGHPGESAVELGRIIDRALRESRA-----VD 130

Query: 124 LSSLIVVEGKLCWDLYIEGLVLSSEGNLLDALGAAIKAALSNTGIPKVHVAAEALDNEQP 183
             SL V+ GKL W + I+  +L + GNL+DA   A  AAL     P   V     DN Q 
Sbjct: 131 TESLCVLAGKLVWSVRIDLHILDNGGNLVDAANVAALAALMTFRRPDCTVGG---DNSQD 190

Query: 184 EV--DVSDEEFLQFDTSGVPAIVT--LTKVGKHYIVDATLEEESQMSSAVSISINRHGHI 243
            +     + E L      +P   T      G   ++D T  EE+ M   +++++N +G I
Sbjct: 191 VIIHPPEEREPLPLIIHHLPIAFTFGFFNKGSILVMDPTYVEEAVMCGRMTVTVNANGDI 250

Query: 244 CGLTKRGGVGVDPSIIL 257
           C + K G  GV+ S+IL
Sbjct: 251 CAIQKPGEEGVNQSVIL 256

[Close]

BLAST of Chy2G048560 vs. TAIR 10
Match: AT3G12990.3 (ribonuclease PH45A )

HSP 1 Score: 120.6 bits (301), Expect = 2.1e-27
Identity = 82/257 (31.91%), Postives = 132/257 (51.36%), Query Frame = 0


Query: 4   LSTGEKLFIQAGIAQDLRTDGRGRLTYRPISIETDVISQANGSAKVRMGGTEVIATVKAE 63
           L+  E  F+++ +  +LR DGRG   YR ++I+     +  GS++V++G T V+A V A+
Sbjct: 11  LTVNESKFVESALQSELRVDGRGLYDYRKLTIK---FGKEYGSSQVQLGQTHVMAFVTAQ 70

Query: 64  LGRPNPMQPDKGKVSISVDCSPTAEPAFEGRGGEELSTDLSIALERCLLGGKSGSGAGID 123
           L +P   +P +G  SI  + SP A+P+FE     E + +L   ++R L   ++     +D
Sbjct: 71  LVQPYKDRPSEGSFSIFTEFSPMADPSFEPGHPGESAVELGRIIDRALRESRA-----VD 130

Query: 124 LSSLIVVEGKLCWDLYIEGLVLSSEGNLLDALGAAIKAALSNTGIPKVHVAAEALDNEQP 183
             SL V+ GKL W + I+  +L + GNL+DA   A  AAL     P   V     DN Q 
Sbjct: 131 TESLCVLAGKLVWSVRIDLHILDNGGNLVDAANVAALAALMTFRRPDCTVGG---DNSQD 190

Query: 184 EV--DVSDEEFLQFDTSGVPAIVT--LTKVGKHYIVDATLEEESQMSSAVSISINRHGHI 243
            +     + E L      +P   T      G   ++D T  EE+ M   +++++N +G I
Sbjct: 191 VIIHPPEEREPLPLIIHHLPIAFTFGFFNKGSILVMDPTYVEEAVMCGRMTVTVNANGDI 250

Query: 244 CGLTKRGGVGVDPSIIL 257
           C + K G  GV+ S+IL
Sbjct: 251 CAIQKPGEEGVNQSVIL 256

The following BLAST results are available for this feature:

BLAST of Chy2G048560 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q15024	4.6e-51	38.87	Exosome complex component RRP42 OS=Homo sapiens OX=9606 GN=EXOSC7 PE=1 SV=3	[more]
Q9D0M0	3.9e-50	39.49	Exosome complex exonuclease RRP42 OS=Mus musculus OX=10090 GN=Exosc7 PE=1 SV=2	[more]
Q54VM4	1.4e-44	35.91	Putative exosome complex exonuclease RRP42 OS=Dictyostelium discoideum OX=44689 ...	[more]
Q8TYC2	3.0e-34	34.08	Exosome complex component Rrp42 OS=Methanopyrus kandleri (strain AV19 / DSM 6324...	[more]
O26778	9.6e-33	32.30	Exosome complex component Rrp42 OS=Methanothermobacter thermautotrophicus (strai...	[more]

BLAST of Chy2G048560 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LU91	1.4e-151	98.60	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G004330 PE=4 SV=1	[more]
A0A1S3B3T5	1.8e-146	95.10	exosome complex component RRP42-like OS=Cucumis melo OX=3656 GN=LOC103485450 PE=...	[more]
A0A5A7SRK6	1.8e-146	95.10	Exosome complex component RRP42-like OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]
A0A6J1EQ99	2.5e-140	89.86	exosome complex component RRP42 OS=Cucurbita moschata OX=3662 GN=LOC111434693 PE...	[more]
A0A6J1JIH0	4.7e-139	89.16	exosome complex component RRP42 OS=Cucurbita maxima OX=3661 GN=LOC111486098 PE=4...	[more]

BLAST of Chy2G048560 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004151651.2	4.80e-195	98.60	exosome complex component RRP42 [Cucumis sativus] >XP_011656293.1 exosome comple...	[more]
XP_008441268.1	2.44e-188	95.10	PREDICTED: exosome complex component RRP42-like [Cucumis melo] >XP_008441269.1 P...	[more]
XP_038891978.1	6.70e-186	93.01	exosome complex component RRP42 isoform X1 [Benincasa hispida] >XP_038891979.1 e...	[more]
XP_023529361.1	7.16e-181	90.21	exosome complex component RRP42 [Cucurbita pepo subsp. pepo] >XP_023529362.1 exo...	[more]
XP_022927940.1	2.91e-180	89.86	exosome complex component RRP42 [Cucurbita moschata] >XP_022927941.1 exosome com...	[more]

BLAST of Chy2G048560 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G07750.1	4.2e-124	76.49	3'-5'-exoribonuclease family protein	[more]
AT3G07750.2	4.2e-124	76.49	3'-5'-exoribonuclease family protein	[more]
AT3G12990.1	2.1e-27	31.91	ribonuclease PH45A	[more]
AT3G12990.2	2.1e-27	31.91	ribonuclease PH45A	[more]
AT3G12990.3	2.1e-27	31.91	ribonuclease PH45A	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001247	Exoribonuclease, phosphorolytic domain 1	PFAM	PF01138	RNase_PH	coord: 30..169 e-value: 3.2E-27 score: 95.6
IPR027408	PNPase/RNase PH domain superfamily	GENE3D	3.30.230.70		coord: 3..286 e-value: 3.9E-80 score: 271.3
IPR015847	Exoribonuclease, phosphorolytic domain 2	PFAM	PF03725	RNase_PH_C	coord: 200..263 e-value: 2.5E-8 score: 33.8
None	No IPR available	PANTHER	PTHR11097:SF30	BNAA05G29900D PROTEIN	coord: 1..284
None	No IPR available	PANTHER	PTHR11097	EXOSOME COMPLEX EXONUCLEASE RIBOSOMAL RNA PROCESSING PROTEIN	coord: 1..284
None	No IPR available	CDD	cd11367	RNase_PH_RRP42	coord: 4..277 e-value: 6.54006E-125 score: 355.365
IPR036345	Exoribonuclease, PH domain 2 superfamily	SUPERFAMILY	55666	Ribonuclease PH domain 2-like	coord: 196..279
IPR020568	Ribosomal protein S5 domain 2-type fold	SUPERFAMILY	54211	Ribosomal protein S5 domain 2-like	coord: 4..223

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy2G048560.1	Chy2G048560.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0043928	exonucleolytic catabolism of deadenylated mRNA
biological_process	GO:0000467	exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
biological_process	GO:0071028	nuclear mRNA surveillance
biological_process	GO:0071042	nuclear polyadenylation-dependent mRNA catabolic process
biological_process	GO:0071035	nuclear polyadenylation-dependent rRNA catabolic process
biological_process	GO:0071038	nuclear polyadenylation-dependent tRNA catabolic process
biological_process	GO:0034427	nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5'
biological_process	GO:0034473	U1 snRNA 3'-end processing
biological_process	GO:0034475	U4 snRNA 3'-end processing
biological_process	GO:0034476	U5 snRNA 3'-end processing
cellular_component	GO:0000177	cytoplasmic exosome (RNase complex)
cellular_component	GO:0000176	nuclear exosome (RNase complex)
molecular_function	GO:0016740	transferase activity