Chy2G047950 (gene) Cucumber (hystrix) v1

Overview


Name	Chy2G047950
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	Protein NUCLEAR FUSION DEFECTIVE 4
Location	chrH02: 28631909 .. 28632631 (+)
RNA-Seq Expression	Chy2G047950
Synteny	Chy2G047950

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCTGCAGCAGTTACATCAAAGATATTTGGGATAAAGCATATGGGCACCATTTACAGCACCATTAATGTAGCTTATCATCCCATTGGATCTTACATTTTATCTGTTAGAATAGCCTCTCATGAAGATAATTGTTGCTTTTGGAAGCTCTGTTTTATGGAATTTTGTCTTATGGTAAGCTCTACAGAGATAGGTTCATATCTCCGCCTTCAATCTCCTCCTCCTCATTCTTGCTTCCCCTCTCGTTATCCCAATCAGAACAAAAACAGAGGAATCTGTTTTCAAAATGAAACTTCAAATTACCGATGACCCCATTGAATATCACTACGTTCCTAGTGAGGAAAAGATCAATGATGAGCTAACGATTGTGAAAGATAGAGAAATGAATATAATCGAGTCAATCGGCACAGTGAACTTCTGGCTATTATTTTTCACGATGACGTGTGGAATGGGATCTGGGTTAGCCATCACAAACAACATGAACCAACTCAGCCAGTCTTTAGGATACAGAACAGTCCAGATCAACACCTTCGTTCCACTTTGGAGCATTTGGAATTTCCTTGGTCGTTTGGGATCTGCTATGCCTCTGATCTTCTCCTCTGGAAACTTAATGGCCTTGCCCCGTTAGCAATGACCGTCGGCCATATCATCGTAGTTTTAGGATTTCGTGGGAATTTGTATTTGGGATCGGTGATAGTGGGGATTTGTTACGGAGCTCATTGA

mRNA sequence

ATGCCTGCAGCAGTTACATCAAAGATATTTGGGATAAAGCATATGGGCACCATTTACAGCACCATTAATGTAGCTTATCATCCCATTGGATCTTACATTTTATCTGTTAGAATAGCCTCTCATGAAGATAATTGTTGCTTTTGGAAGCTCTGTTTTATGGAATTTTGTCTTATGAGAAATGAATATAATCGAGTCAATCGGCACAGTGAACTTCTGGCTATTATTTTTCACGATGACGTGTGGAATGGGATCTGGGTTAGCCATCACAAACAACATGAACCAACTCAGCCAGTCTTTAGGATACAGAACAGTCCAGATCAACACCTTCGTTCCACTTTGGAGCATTTGGAATTTCCTTGGTCGTTTGGGATCTGCTATGCCTCTGATCTTCTCCTCTGGAAACTTAATGGCCTTGCCCCGTTAGCAATGACCGTCGGCCATATCATCGTAGTTTTAGGATTTCGTGGGAATTTGTATTTGGGATCGGTGATAGTGGGGATTTGTTACGGAGCTCATTGA

Coding sequence (CDS)

ATGCCTGCAGCAGTTACATCAAAGATATTTGGGATAAAGCATATGGGCACCATTTACAGCACCATTAATGTAGCTTATCATCCCATTGGATCTTACATTTTATCTGTTAGAATAGCCTCTCATGAAGATAATTGTTGCTTTTGGAAGCTCTGTTTTATGGAATTTTGTCTTATGAGAAATGAATATAATCGAGTCAATCGGCACAGTGAACTTCTGGCTATTATTTTTCACGATGACGTGTGGAATGGGATCTGGGTTAGCCATCACAAACAACATGAACCAACTCAGCCAGTCTTTAGGATACAGAACAGTCCAGATCAACACCTTCGTTCCACTTTGGAGCATTTGGAATTTCCTTGGTCGTTTGGGATCTGCTATGCCTCTGATCTTCTCCTCTGGAAACTTAATGGCCTTGCCCCGTTAGCAATGACCGTCGGCCATATCATCGTAGTTTTAGGATTTCGTGGGAATTTGTATTTGGGATCGGTGATAGTGGGGATTTGTTACGGAGCTCATTGA

Protein sequence

MPAAVTSKIFGIKHMGTIYSTINVAYHPIGSYILSVRIASHEDNCCFWKLCFMEFCLMRNEYNRVNRHSELLAIIFHDDVWNGIWVSHHKQHEPTQPVFRIQNSPDQHLRSTLEHLEFPWSFGICYASDLLLWKLNGLAPLAMTVGHIIVVLGFRGNLYLGSVIVGICYGAH*

Homology

[Close]

BLAST of Chy2G047950 vs. ExPASy TrEMBL
Match: A0A371FBU1 (Protein NUCLEAR FUSION DEFECTIVE 4 (Fragment) OS=Mucuna pruriens OX=157652 GN=NFD4 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 1.7e-06
Identity = 34/57 (59.65%), Postives = 40/57 (70.18%), Query Frame = 0


Query: 5   VTSKIFGIKHMGTIYSTINVAYHPIGSYILSVRI--------ASHEDNCCFWKLCFM 54
           +TS+IFG+KHMGTI++TI  A  P+GSYILSVRI        A  EDN CF K CFM
Sbjct: 447 ITSEIFGVKHMGTIFNTI-AAASPLGSYILSVRIVGYIYDKQADKEDNSCFGKDCFM 502

[Close]

BLAST of Chy2G047950 vs. ExPASy TrEMBL
Match: A0A6J1EZJ6 (uncharacterized protein LOC111440723 OS=Cucurbita moschata OX=3662 GN=LOC111440723 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 2.2e-06
Identity = 36/63 (57.14%), Postives = 41/63 (65.08%), Query Frame = 0


Query: 120 WSF----GICYASDLLLWKLNGLAP-------LAMTVGHIIVVLGFRGNLYLGSVIVGIC 172
           W+F    G  YASDLLL +L    P       L M+VGHII+  GF GNLYLGSVIVGIC
Sbjct: 350 WNFLGRLGSGYASDLLLRELGWARPLLMAVALLTMSVGHIIIASGFSGNLYLGSVIVGIC 409

[Close]

BLAST of Chy2G047950 vs. ExPASy TrEMBL
Match: A0A6J0N9Z2 (uncharacterized protein LOC108852043 OS=Raphanus sativus OX=3726 GN=LOC108852043 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 2.8e-06
Identity = 33/57 (57.89%), Postives = 38/57 (66.67%), Query Frame = 0


Query: 122 FGICYASDLLLWKLNGLAPL-------AMTVGHIIVVLGFRGNLYLGSVIVGICYGA 172
           FG  YASD LL K     PL       AMT+GH+I+  GF GNLY+GSVIVGICYG+
Sbjct: 365 FGAGYASDALLHKKGWPRPLLMATTLGAMTIGHLIIASGFEGNLYVGSVIVGICYGS 421

[Close]

BLAST of Chy2G047950 vs. ExPASy TrEMBL
Match: A0A068V316 (MFS domain-containing protein OS=Coffea canephora OX=49390 GN=GSCOC_T00042386001 PE=3 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 4.8e-06
Identity = 33/73 (45.21%), Postives = 44/73 (60.27%), Query Frame = 0


Query: 110 RSTLEHLEFPWS----FGICYASDLLLWKLNGLAPL-------AMTVGHIIVVLGFRGNL 169
           RSTL  L   W+    FG  YASD+ L +     PL       AMT GH+++  GF GNL
Sbjct: 368 RSTLVSLWSIWNFLGRFGAGYASDIFLHRRGWARPLLMALTLAAMTAGHVVIASGFSGNL 427

Query: 170 YLGSVIVGICYGA 172
           ++GSV+VG+CYG+
Sbjct: 428 FIGSVLVGVCYGS 440

[Close]

BLAST of Chy2G047950 vs. ExPASy TrEMBL
Match: A0A6P6X9A0 (protein NUCLEAR FUSION DEFECTIVE 4-like OS=Coffea arabica OX=13443 GN=LOC113741035 PE=3 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 4.8e-06
Identity = 33/73 (45.21%), Postives = 44/73 (60.27%), Query Frame = 0


Query: 110 RSTLEHLEFPWS----FGICYASDLLLWKLNGLAPL-------AMTVGHIIVVLGFRGNL 169
           RSTL  L   W+    FG  YASD+ L +     PL       AMT GH+++  GF GNL
Sbjct: 386 RSTLVSLWSIWNFLGRFGAGYASDIFLHRRGWARPLLMALTLAAMTAGHVVIASGFSGNL 445

Query: 170 YLGSVIVGICYGA 172
           ++GSV+VG+CYG+
Sbjct: 446 FIGSVLVGVCYGS 458

[Close]

BLAST of Chy2G047950 vs. NCBI nr
Match: RDX75757.1 (Protein NUCLEAR FUSION DEFECTIVE 4, partial [Mucuna pruriens])

HSP 1 Score: 62.0 bits (149), Expect = 1.30e-07
Identity = 34/57 (59.65%), Postives = 40/57 (70.18%), Query Frame = 0


Query: 5   VTSKIFGIKHMGTIYSTINVAYHPIGSYILSVRI--------ASHEDNCCFWKLCFM 53
           +TS+IFG+KHMGTI++TI  A  P+GSYILSVRI        A  EDN CF K CFM
Sbjct: 447 ITSEIFGVKHMGTIFNTIAAA-SPLGSYILSVRIVGYIYDKQADKEDNSCFGKDCFM 502

[Close]

BLAST of Chy2G047950 vs. NCBI nr
Match: XP_018481036.1 (PREDICTED: uncharacterized protein LOC108852043 [Raphanus sativus])

HSP 1 Score: 61.2 bits (147), Expect = 2.36e-07
Identity = 38/80 (47.50%), Postives = 43/80 (53.75%), Query Frame = 0


Query: 100 RIQNSPDQHLRSTLEHLEFPWSFGICYASDLLLWKLNGLAPL-------AMTVGHIIVVL 159
           R  N     L S      F   FG  YASD LL K     PL       AMT+GH+I+  
Sbjct: 343 RYSNVEINALLSLWNIWNFIGRFGAGYASDALLHKKGWPRPLLMATTLGAMTIGHLIIAS 402

Query: 160 GFRGNLYLGSVIVGICYGAH 172
           GF GNLY+GSVIVGICYG+ 
Sbjct: 403 GFEGNLYVGSVIVGICYGSQ 422

[Close]

BLAST of Chy2G047950 vs. NCBI nr
Match: XP_022933362.1 (uncharacterized protein LOC111440723 [Cucurbita moschata])

HSP 1 Score: 60.8 bits (146), Expect = 3.18e-07
Identity = 36/64 (56.25%), Postives = 41/64 (64.06%), Query Frame = 0


Query: 120 WSF----GICYASDLLLWKLNGLAPL-------AMTVGHIIVVLGFRGNLYLGSVIVGIC 172
           W+F    G  YASDLLL +L    PL        M+VGHII+  GF GNLYLGSVIVGIC
Sbjct: 350 WNFLGRLGSGYASDLLLRELGWARPLLMAVALLTMSVGHIIIASGFSGNLYLGSVIVGIC 409

[Close]

BLAST of Chy2G047950 vs. NCBI nr
Match: KAG6587515.1 (Protein NUCLEAR FUSION DEFECTIVE 4, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 60.8 bits (146), Expect = 3.19e-07
Identity = 36/64 (56.25%), Postives = 41/64 (64.06%), Query Frame = 0


Query: 120 WSF----GICYASDLLLWKLNGLAPL-------AMTVGHIIVVLGFRGNLYLGSVIVGIC 172
           W+F    G  YASDLLL +L    PL        M+VGHII+  GF GNLYLGSVIVGIC
Sbjct: 358 WNFLGRLGSGYASDLLLRELGWARPLLMAVALLTMSVGHIIIASGFSGNLYLGSVIVGIC 417

[Close]

BLAST of Chy2G047950 vs. NCBI nr
Match: KAG7021495.1 (Protein NUCLEAR FUSION DEFECTIVE 4 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 60.8 bits (146), Expect = 3.75e-07
Identity = 36/64 (56.25%), Postives = 41/64 (64.06%), Query Frame = 0


Query: 120 WSF----GICYASDLLLWKLNGLAPL-------AMTVGHIIVVLGFRGNLYLGSVIVGIC 172
           W+F    G  YASDLLL +L    PL        M+VGHII+  GF GNLYLGSVIVGIC
Sbjct: 898 WNFLGRLGSGYASDLLLRELGWARPLLMAVALLTMSVGHIIIASGFSGNLYLGSVIVGIC 957

[Close]

BLAST of Chy2G047950 vs. TAIR 10
Match: AT1G74780.1 (Nodulin-like / Major Facilitator Superfamily protein )

HSP 1 Score: 58.9 bits (141), Expect = 4.6e-09
Identity = 30/57 (52.63%), Postives = 38/57 (66.67%), Query Frame = 0


Query: 122 FGICYASDLLLWKLNGLAPL-------AMTVGHIIVVLGFRGNLYLGSVIVGICYGA 172
           FG  YASD LL K     PL        M++GH+I+  GF+GNLY+GSVIVG+CYG+
Sbjct: 375 FGAGYASDALLHKKGWPRPLLMAATLGTMSIGHLIIASGFQGNLYVGSVIVGVCYGS 431

[Close]

BLAST of Chy2G047950 vs. TAIR 10
Match: AT1G18940.1 (Nodulin-like / Major Facilitator Superfamily protein )

HSP 1 Score: 54.7 bits (130), Expect = 8.7e-08
Identity = 29/57 (50.88%), Postives = 36/57 (63.16%), Query Frame = 0


Query: 122 FGICYASDLLLWKLNGLAPL-------AMTVGHIIVVLGFRGNLYLGSVIVGICYGA 172
           FG  Y SD LL +     PL        MT+GH+I+  GF+GNLY GS+IVGICYG+
Sbjct: 368 FGGGYVSDWLLHRKGWPRPLLMATTLGTMTIGHLIIASGFQGNLYPGSIIVGICYGS 424

[Close]

BLAST of Chy2G047950 vs. TAIR 10
Match: AT2G34355.1 (Major facilitator superfamily protein )

HSP 1 Score: 45.1 bits (105), Expect = 6.9e-05
Identity = 24/57 (42.11%), Postives = 33/57 (57.89%), Query Frame = 0


Query: 122 FGICYASDLLLWKLNGLAPL-------AMTVGHIIVVLGFRGNLYLGSVIVGICYGA 172
           FG  Y SD  L K +   P+        M +GHIIV  G +G+LY GSV++G+ YG+
Sbjct: 366 FGAGYVSDTFLHKHSWPRPIFMAITLGVMAIGHIIVASGVQGSLYAGSVLIGMAYGS 422

[Close]

BLAST of Chy2G047950 vs. TAIR 10
Match: AT4G34950.1 (Major facilitator superfamily protein )

HSP 1 Score: 42.7 bits (99), Expect = 3.4e-04
Identity = 18/39 (46.15%), Postives = 28/39 (71.79%), Query Frame = 0


Query: 132 LWKLNGLAPLAMTVGHIIVVLGFRGNLYLGSVIVGICYG 171
           LW  N  A + M VG++++ L   G+LY+GS++VG+CYG
Sbjct: 419 LW--NAAAQIIMAVGYLLMALALPGSLYIGSMVVGVCYG 455

The following BLAST results are available for this feature:

BLAST of Chy2G047950 vs.


Match Name	E-value	Identity	Description

BLAST of Chy2G047950 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A371FBU1	1.7e-06	59.65	Protein NUCLEAR FUSION DEFECTIVE 4 (Fragment) OS=Mucuna pruriens OX=157652 GN=NF...	[more]
A0A6J1EZJ6	2.2e-06	57.14	uncharacterized protein LOC111440723 OS=Cucurbita moschata OX=3662 GN=LOC1114407...	[more]
A0A6J0N9Z2	2.8e-06	57.89	uncharacterized protein LOC108852043 OS=Raphanus sativus OX=3726 GN=LOC108852043...	[more]
A0A068V316	4.8e-06	45.21	MFS domain-containing protein OS=Coffea canephora OX=49390 GN=GSCOC_T00042386001...	[more]
A0A6P6X9A0	4.8e-06	45.21	protein NUCLEAR FUSION DEFECTIVE 4-like OS=Coffea arabica OX=13443 GN=LOC1137410...	[more]

BLAST of Chy2G047950 vs. NCBI nr


Match Name	E-value	Identity	Description
RDX75757.1	1.30e-07	59.65	Protein NUCLEAR FUSION DEFECTIVE 4, partial [Mucuna pruriens]	[more]
XP_018481036.1	2.36e-07	47.50	PREDICTED: uncharacterized protein LOC108852043 [Raphanus sativus]	[more]
XP_022933362.1	3.18e-07	56.25	uncharacterized protein LOC111440723 [Cucurbita moschata]	[more]
KAG6587515.1	3.19e-07	56.25	Protein NUCLEAR FUSION DEFECTIVE 4, partial [Cucurbita argyrosperma subsp. soror...	[more]
KAG7021495.1	3.75e-07	56.25	Protein NUCLEAR FUSION DEFECTIVE 4 [Cucurbita argyrosperma subsp. argyrosperma]	[more]

BLAST of Chy2G047950 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G74780.1	4.6e-09	52.63	Nodulin-like / Major Facilitator Superfamily protein	[more]
AT1G18940.1	8.7e-08	50.88	Nodulin-like / Major Facilitator Superfamily protein	[more]
AT2G34355.1	6.9e-05	42.11	Major facilitator superfamily protein	[more]
AT4G34950.1	3.4e-04	46.15	Major facilitator superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR21576	UNCHARACTERIZED NODULIN-LIKE PROTEIN	coord: 4..40 coord: 109..171
None	No IPR available	PANTHER	PTHR21576:SF118	BNAA06G13140D PROTEIN	coord: 4..40
None	No IPR available	PANTHER	PTHR21576:SF118	BNAA06G13140D PROTEIN	coord: 109..171

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy2G047950.1	Chy2G047950.1	mRNA