Chy2G047670 (gene) Cucumber (hystrix) v1

Overview
NameChy2G047670
Typegene
OrganismCucumis hystrix (Cucumber (hystrix) v1)
DescriptionCLAVATA3/ESR-RELATED
LocationchrH02: 28456098 .. 28456394 (+)
RNA-Seq ExpressionChy2G047670
SyntenyChy2G047670
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTTCCTTGTTTAGCAGGAAAGGTTTGAGCTTTGTGTTTGTTGTAGCTTGTTTTTTGCTGTGTCTTCTTGATCAACAGCCTCAAACAACAGCAAATGGGCTTAGCACAATTGATGTTGCTCTCAAATGGGTAGCTTTCAAATCCACAAATACTATCAACACCCACAAAGCTGATTCATCAGATCAGAAAAATTTGAATTTAGCAGCTCCATCACCAGCCATGAACTTTGACCCAAATCAATCCAACAAAAGAGGAGTCAAGAAAGGATCTGATCCAATTCACAACAGATCTTAA

mRNA sequence

ATGGGTTCCTTGTTTAGCAGGAAAGGTTTGAGCTTTGTGTTTGTTGTAGCTTGTTTTTTGCTGTGTCTTCTTGATCAACAGCCTCAAACAACAGCAAATGGGCTTAGCACAATTGATGTTGCTCTCAAATGGGTAGCTTTCAAATCCACAAATACTATCAACACCCACAAAGCTGATTCATCAGATCAGAAAAATTTGAATTTAGCAGCTCCATCACCAGCCATGAACTTTGACCCAAATCAATCCAACAAAAGAGGAGTCAAGAAAGGATCTGATCCAATTCACAACAGATCTTAA

Coding sequence (CDS)

ATGGGTTCCTTGTTTAGCAGGAAAGGTTTGAGCTTTGTGTTTGTTGTAGCTTGTTTTTTGCTGTGTCTTCTTGATCAACAGCCTCAAACAACAGCAAATGGGCTTAGCACAATTGATGTTGCTCTCAAATGGGTAGCTTTCAAATCCACAAATACTATCAACACCCACAAAGCTGATTCATCAGATCAGAAAAATTTGAATTTAGCAGCTCCATCACCAGCCATGAACTTTGACCCAAATCAATCCAACAAAAGAGGAGTCAAGAAAGGATCTGATCCAATTCACAACAGATCTTAA

Protein sequence

MGSLFSRKGLSFVFVVACFLLCLLDQQPQTTANGLSTIDVALKWVAFKSTNTINTHKADSSDQKNLNLAAPSPAMNFDPNQSNKRGVKKGSDPIHNRS*
Homology
BLAST of Chy2G047670 vs. ExPASy TrEMBL
Match: A0A0A0LPD5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G009720 PE=4 SV=1)

HSP 1 Score: 190.7 bits (483), Expect = 3.0e-45
Identity = 94/98 (95.92%), Postives = 96/98 (97.96%), Query Frame = 0

Query: 1  MGSLFSRKGLSFVFVVACFLLCLLDQQPQTTANGLSTIDVALKWVAFKSTNTINTHKADS 60
          MGSLFSRKGL FVFVVACFLLC+LDQQPQTTANGLSTID ALKWVAFKSTNTINTHKADS
Sbjct: 1  MGSLFSRKGLRFVFVVACFLLCVLDQQPQTTANGLSTIDAALKWVAFKSTNTINTHKADS 60

Query: 61 SDQKNLNLAAPSPAMNFDPNQSNKRGVKKGSDPIHNRS 99
          SD+KNLNLAAPSPAMNFDPNQSNKRGVKKGSDPIHNRS
Sbjct: 61 SDEKNLNLAAPSPAMNFDPNQSNKRGVKKGSDPIHNRS 98

BLAST of Chy2G047670 vs. ExPASy TrEMBL
Match: A0A2P6P2N1 (Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr7g0181441 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 2.5e-07
Identity = 40/86 (46.51%), Postives = 57/86 (66.28%), Query Frame = 0

Query: 17 ACFLLCL--LDQQPQTTANGLSTIDVALKWVA--FKSTNTINTHKADSSDQKNLNLA-AP 76
          A  L+C+  L  QP+   +GL ++D+AL+W    F   N+++  KA + +     L+ AP
Sbjct: 9  AILLVCIGFLALQPE-KVSGLRSMDLALRWDKRHFSFLNSLHVVKAVAVEDLQAKLSLAP 68

Query: 77 SPAMNFDPNQSNKRGVKKGSDPIHNR 98
          +PAM FDP+QSNKR V+KGSDPIHNR
Sbjct: 69 APAMTFDPSQSNKRTVRKGSDPIHNR 93

BLAST of Chy2G047670 vs. ExPASy TrEMBL
Match: A0A314YU30 (Uncharacterized protein OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_16404 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 1.2e-06
Identity = 44/102 (43.14%), Postives = 60/102 (58.82%), Query Frame = 0

Query: 1  MGSLFSRKGLSFVFVVACFLLCLLDQQPQTTANGLSTIDVALKW----VAFKSTNTINTH 60
          MG L  R  + FV       +  L  QP+   +GL ++D+AL+W    ++F  +  +   
Sbjct: 1  MGFLAYRSAVLFV------CIGFLALQPE-KVSGLRSMDLALRWDKGHMSFLKSLHLVEA 60

Query: 61 KADSSDQKNLNLAAPSPAMNFDPNQSNKRGVKKGSDPIHNRS 99
           A    Q  L+L AP+P+M FDPNQSNKR V+KGSDPIHNRS
Sbjct: 61 VAVEDLQAKLSL-APAPSMTFDPNQSNKRKVRKGSDPIHNRS 94

BLAST of Chy2G047670 vs. ExPASy TrEMBL
Match: A0A067ENV6 (Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g039594mg PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 1.2e-06
Identity = 44/100 (44.00%), Postives = 57/100 (57.00%), Query Frame = 0

Query: 1  MGSLFSRKGLSFVFVVACFLLCLLDQQPQTTANGLSTIDVALKWVAFKSTNTINTHKADS 60
          MGSL  R    F+ +V    L L   QPQ   +GL +ID+ L+W         NT    +
Sbjct: 1  MGSLVYR---GFILLVCIGFLSL---QPQ-NVSGLRSIDLVLRWDKEVLPAVRNTRILKA 60

Query: 61 SDQKNLNL---AAPSPAMNFDPNQSNKRGVKKGSDPIHNR 98
             K+L +    AP+P++ FDPNQSNKR V+KGSDPIHNR
Sbjct: 61 VPLKDLQMNPSLAPAPSLMFDPNQSNKRKVRKGSDPIHNR 93

BLAST of Chy2G047670 vs. ExPASy TrEMBL
Match: A0A445ABG3 (Uncharacterized protein OS=Arachis hypogaea OX=3818 GN=Ahy_A08g041332 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 1.6e-06
Identity = 41/85 (48.24%), Postives = 54/85 (63.53%), Query Frame = 0

Query: 14 FVVACFLLCLLDQQPQTTANGLSTIDVALKWVAFKSTNTINTHKADSSDQKNLNLAAPSP 73
          F++ C ++ +L  QP    +GL + D+ALKW   K  + I         Q  L++ AP+P
Sbjct: 10 FILVC-VIGVLASQP-CMVSGLRSQDLALKW--DKGRSRILKAVTVEDLQSKLDV-APAP 69

Query: 74 AMNFDPNQSNKRGVKKGSDPIHNRS 99
          +M FDPNQSNKR VKKGSDPIHNRS
Sbjct: 70 SMTFDPNQSNKRTVKKGSDPIHNRS 89

BLAST of Chy2G047670 vs. NCBI nr
Match: KGN63668.1 (hypothetical protein Csa_014085 [Cucumis sativus])

HSP 1 Score: 194 bits (494), Expect = 1.77e-62
Identity = 94/98 (95.92%), Postives = 96/98 (97.96%), Query Frame = 0

Query: 1  MGSLFSRKGLSFVFVVACFLLCLLDQQPQTTANGLSTIDVALKWVAFKSTNTINTHKADS 60
          MGSLFSRKGL FVFVVACFLLC+LDQQPQTTANGLSTID ALKWVAFKSTNTINTHKADS
Sbjct: 1  MGSLFSRKGLRFVFVVACFLLCVLDQQPQTTANGLSTIDAALKWVAFKSTNTINTHKADS 60

Query: 61 SDQKNLNLAAPSPAMNFDPNQSNKRGVKKGSDPIHNRS 98
          SD+KNLNLAAPSPAMNFDPNQSNKRGVKKGSDPIHNRS
Sbjct: 61 SDEKNLNLAAPSPAMNFDPNQSNKRGVKKGSDPIHNRS 98

BLAST of Chy2G047670 vs. NCBI nr
Match: KAG6589506.1 (hypothetical protein SDJN03_14929, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 120 bits (301), Expect = 4.61e-33
Identity = 70/101 (69.31%), Postives = 81/101 (80.20%), Query Frame = 0

Query: 1  MGSLFSRKGLSFVFVVACFLLCLLDQQPQTTANGLSTIDVALKWVAFKSTNTINTHKADS 60
          MG LF RK L F+F++A F+  LL  QPQT A+GL+TIDVALKWVAFKS   I+THKAD 
Sbjct: 1  MGFLFCRKVLFFLFLLAGFVFSLL--QPQT-ASGLATIDVALKWVAFKSP-AIHTHKADD 60

Query: 61 SDQK----NLNLAAPSPAMNFDPNQSNKRGVKKGSDPIHNR 97
          S++K    N+N+A PSPAMNFDPNQSNKR VKKGSDPIHNR
Sbjct: 61 SEKKLNMKNMNVA-PSPAMNFDPNQSNKRRVKKGSDPIHNR 96

BLAST of Chy2G047670 vs. NCBI nr
Match: KAG6587538.1 (hypothetical protein SDJN03_16103, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 107 bits (266), Expect = 8.49e-28
Identity = 63/96 (65.62%), Postives = 73/96 (76.04%), Query Frame = 0

Query: 6  SRKGLSFVFVVACFLLCLLDQQPQTTANGLSTIDVALKWVAFKSTNTINTHKADSSDQ-- 65
          S K L F  ++A   LC+   QPQT A+GL+TID+ALKWVAFKS  T NTH  DS  +  
Sbjct: 3  STKALVFALLLAGVSLCV---QPQT-ASGLTTIDLALKWVAFKSPIT-NTHNPDSVKKLK 62

Query: 66 -KNLNLAAPSPAMNFDPNQSNKRGVKKGSDPIHNRS 98
           KN++LA PSPAM+FDPNQSNKRGVKKGSDPIHNRS
Sbjct: 63 MKNMSLA-PSPAMHFDPNQSNKRGVKKGSDPIHNRS 92

BLAST of Chy2G047670 vs. NCBI nr
Match: PRQ16182.1 (hypothetical protein RchiOBHm_Chr7g0181441 [Rosa chinensis])

HSP 1 Score: 68.2 bits (165), Expect = 1.94e-12
Identity = 40/86 (46.51%), Postives = 57/86 (66.28%), Query Frame = 0

Query: 17 ACFLLCL--LDQQPQTTANGLSTIDVALKWVA--FKSTNTINTHKADSSDQKNLNLA-AP 76
          A  L+C+  L  QP+   +GL ++D+AL+W    F   N+++  KA + +     L+ AP
Sbjct: 9  AILLVCIGFLALQPEKV-SGLRSMDLALRWDKRHFSFLNSLHVVKAVAVEDLQAKLSLAP 68

Query: 77 SPAMNFDPNQSNKRGVKKGSDPIHNR 97
          +PAM FDP+QSNKR V+KGSDPIHNR
Sbjct: 69 APAMTFDPSQSNKRTVRKGSDPIHNR 93

BLAST of Chy2G047670 vs. NCBI nr
Match: KDO55565.1 (hypothetical protein CISIN_1g039594mg [Citrus sinensis])

HSP 1 Score: 66.6 bits (161), Expect = 7.82e-12
Identity = 44/100 (44.00%), Postives = 57/100 (57.00%), Query Frame = 0

Query: 1  MGSLFSRKGLSFVFVVACFLLCLLDQQPQTTANGLSTIDVALKWVAFKSTNTINTHKADS 60
          MGSL  R    F+ +V    L L   QPQ   +GL +ID+ L+W         NT    +
Sbjct: 1  MGSLVYR---GFILLVCIGFLSL---QPQNV-SGLRSIDLVLRWDKEVLPAVRNTRILKA 60

Query: 61 SDQKNLNL---AAPSPAMNFDPNQSNKRGVKKGSDPIHNR 97
             K+L +    AP+P++ FDPNQSNKR V+KGSDPIHNR
Sbjct: 61 VPLKDLQMNPSLAPAPSLMFDPNQSNKRKVRKGSDPIHNR 93

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0LPD53.0e-4595.92Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G009720 PE=4 SV=1[more]
A0A2P6P2N12.5e-0746.51Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr7g0181441 PE=4... [more]
A0A314YU301.2e-0643.14Uncharacterized protein OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_164... [more]
A0A067ENV61.2e-0644.00Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g039594mg PE=4 SV=1[more]
A0A445ABG31.6e-0648.24Uncharacterized protein OS=Arachis hypogaea OX=3818 GN=Ahy_A08g041332 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
KGN63668.11.77e-6295.92hypothetical protein Csa_014085 [Cucumis sativus][more]
KAG6589506.14.61e-3369.31hypothetical protein SDJN03_14929, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6587538.18.49e-2865.63hypothetical protein SDJN03_16103, partial [Cucurbita argyrosperma subsp. sorori... [more]
PRQ16182.11.94e-1246.51hypothetical protein RchiOBHm_Chr7g0181441 [Rosa chinensis][more]
KDO55565.17.82e-1244.00hypothetical protein CISIN_1g039594mg [Citrus sinensis][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 56..87
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 56..98
NoneNo IPR availablePANTHERPTHR36726:SF5CLAVATA3/ESR (CLE) GENE FAMILY MEMBER MTCLE11coord: 13..98
IPR038821CLE-related protein 45-likePANTHERPTHR36726CLAVATA3/ESR (CLE)-RELATED PROTEIN 45coord: 13..98

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Chy2G047670.1Chy2G047670.1mRNA