Chy2G047440 (gene) Cucumber (hystrix) v1

Overview


Name	Chy2G047440
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	Unknown protein
Location	chrH02: 28336453 .. 28336830 (-)
RNA-Seq Expression	Chy2G047440
Synteny	Chy2G047440

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAAGGAAAGGAGGATTGATGACGCTTCTTAAAGCTTGTGTTTTGATTCAAGGGAGAAGCACCACGGCGCTATTAGTGACTCTGCCTTTTAATATGGGAATGGCCGCCATCGAAGCTCTGTTTCAGTACAGAATAGTTCGAGATTACCATTTGAGAGGAAAATTAGAGCCTTCCATGGTGGTGGAAGGAATGTTTGTTGCTTATTTGTACTCTGTTTTTGTTGTCCTCGACGCCATTGCTAATACTCTGTTCTTCAAGAGTTGCAGAGTGGATTCTCAAATGGGTATAGAAAGAAAGAGCTCTTTTTGGTTTTGGATTGCTGAGAAGGAGAATGAAGGTTGCCGCCATTTGAAGGGATTTGAAGAACTTCCATGA

mRNA sequence

ATGGAAAGGAAAGGAGGATTGATGACGCTTCTTAAAGCTTGTGTTTTGATTCAAGGGAGAAGCACCACGGCGCTATTAGTGACTCTGCCTTTTAATATGGGAATGGCCGCCATCGAAGCTCTGTTTCAGTACAGAATAGTTCGAGATTACCATTTGAGAGGAAAATTAGAGCCTTCCATGGTGGTGGAAGGAATGTTTGTTGCTTATTTGTACTCTGTTTTTGTTGTCCTCGACGCCATTGCTAATACTCTGTTCTTCAAGAGTTGCAGAGTGGATTCTCAAATGGGTATAGAAAGAAAGAGCTCTTTTTGGTTTTGGATTGCTGAGAAGGAGAATGAAGGTTGCCGCCATTTGAAGGGATTTGAAGAACTTCCATGA

Coding sequence (CDS)

ATGGAAAGGAAAGGAGGATTGATGACGCTTCTTAAAGCTTGTGTTTTGATTCAAGGGAGAAGCACCACGGCGCTATTAGTGACTCTGCCTTTTAATATGGGAATGGCCGCCATCGAAGCTCTGTTTCAGTACAGAATAGTTCGAGATTACCATTTGAGAGGAAAATTAGAGCCTTCCATGGTGGTGGAAGGAATGTTTGTTGCTTATTTGTACTCTGTTTTTGTTGTCCTCGACGCCATTGCTAATACTCTGTTCTTCAAGAGTTGCAGAGTGGATTCTCAAATGGGTATAGAAAGAAAGAGCTCTTTTTGGTTTTGGATTGCTGAGAAGGAGAATGAAGGTTGCCGCCATTTGAAGGGATTTGAAGAACTTCCATGA

Protein sequence

MERKGGLMTLLKACVLIQGRSTTALLVTLPFNMGMAAIEALFQYRIVRDYHLRGKLEPSMVVEGMFVAYLYSVFVVLDAIANTLFFKSCRVDSQMGIERKSSFWFWIAEKENEGCRHLKGFEELP*

Homology

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BLAST of Chy2G047440 vs. ExPASy TrEMBL
Match: A0A0A0LPF8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G011450 PE=4 SV=1)

HSP 1 Score: 240.7 bits (613), Expect = 3.2e-60
Identity = 119/125 (95.20%), Postives = 120/125 (96.00%), Query Frame = 0


Query: 1   MERKGGLMTLLKACVLIQGRSTTALLVTLPFNMGMAAIEALFQYRIVRDYHLRGKLEPSM 60
           MERKGG MTLLKACVLIQGRSTTALLVTLPFNMGMAA+EALFQYRIVRDYHLRGKLEPSM
Sbjct: 227 MERKGGFMTLLKACVLIQGRSTTALLVTLPFNMGMAAVEALFQYRIVRDYHLRGKLEPSM 286

Query: 61  VVEGMFVAYLYSVFVVLDAIANTLFFKSCRVDSQMGIERKSSFWFWIAEKENEGCRHLKG 120
           VVEGMFVAYLYSVFVVLDAI NTLFFKSCR DSQMGIERKSSFWFWIAEKENEG  HLKG
Sbjct: 287 VVEGMFVAYLYSVFVVLDAIVNTLFFKSCRADSQMGIERKSSFWFWIAEKENEGFHHLKG 346

Query: 121 FEELP 126
           FEELP
Sbjct: 347 FEELP 351

[Close]

BLAST of Chy2G047440 vs. ExPASy TrEMBL
Match: A0A5A7UQ15 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold274G002660 PE=4 SV=1)

HSP 1 Score: 240.4 bits (612), Expect = 4.2e-60
Identity = 118/125 (94.40%), Postives = 120/125 (96.00%), Query Frame = 0


Query: 1   MERKGGLMTLLKACVLIQGRSTTALLVTLPFNMGMAAIEALFQYRIVRDYHLRGKLEPSM 60
           MERKGG M +LKACVLIQGRSTTALLV LPFN+GMAAIEALFQYRIVRDYHLRGKLEPSM
Sbjct: 1   MERKGGFMAVLKACVLIQGRSTTALLVALPFNIGMAAIEALFQYRIVRDYHLRGKLEPSM 60

Query: 61  VVEGMFVAYLYSVFVVLDAIANTLFFKSCRVDSQMGIERKSSFWFWIAEKENEGCRHLKG 120
           VVEGMFVAYLYSVFVVLDAI NTLFFKSCRVDSQMGIERKSSFWFWIAEKENEGC HLKG
Sbjct: 61  VVEGMFVAYLYSVFVVLDAIVNTLFFKSCRVDSQMGIERKSSFWFWIAEKENEGCHHLKG 120

Query: 121 FEELP 126
           FEELP
Sbjct: 121 FEELP 125

[Close]

BLAST of Chy2G047440 vs. ExPASy TrEMBL
Match: A0A1S4DZG3 (uncharacterized protein LOC103494010 OS=Cucumis melo OX=3656 GN=LOC103494010 PE=4 SV=1)

HSP 1 Score: 240.4 bits (612), Expect = 4.2e-60
Identity = 118/125 (94.40%), Postives = 120/125 (96.00%), Query Frame = 0


Query: 1   MERKGGLMTLLKACVLIQGRSTTALLVTLPFNMGMAAIEALFQYRIVRDYHLRGKLEPSM 60
           MERKGG M +LKACVLIQGRSTTALLV LPFN+GMAAIEALFQYRIVRDYHLRGKLEPSM
Sbjct: 1   MERKGGFMAVLKACVLIQGRSTTALLVALPFNIGMAAIEALFQYRIVRDYHLRGKLEPSM 60

Query: 61  VVEGMFVAYLYSVFVVLDAIANTLFFKSCRVDSQMGIERKSSFWFWIAEKENEGCRHLKG 120
           VVEGMFVAYLYSVFVVLDAI NTLFFKSCRVDSQMGIERKSSFWFWIAEKENEGC HLKG
Sbjct: 61  VVEGMFVAYLYSVFVVLDAIVNTLFFKSCRVDSQMGIERKSSFWFWIAEKENEGCHHLKG 120

Query: 121 FEELP 126
           FEELP
Sbjct: 121 FEELP 125

[Close]

BLAST of Chy2G047440 vs. ExPASy TrEMBL
Match: A0A6J1JAK3 (uncharacterized protein LOC111485055 OS=Cucurbita maxima OX=3661 GN=LOC111485055 PE=4 SV=1)

HSP 1 Score: 198.7 bits (504), Expect = 1.4e-47
Identity = 101/127 (79.53%), Postives = 109/127 (85.83%), Query Frame = 0


Query: 1   MERKGGLMTLLKACVLIQGRSTTALLVTLPFNMGMAAIEALFQYRIVRDYHLRGKLEPSM 60
           MER GG M +LKACVLIQGRS TALLV LPFN+GMAA EALFQYRIVRDYH RG+L PSM
Sbjct: 202 MERNGGFMAILKACVLIQGRSATALLVALPFNLGMAATEALFQYRIVRDYHSRGRLGPSM 261

Query: 61  VVEGMFVAYLYSVFVVLDAIANTLFFKSCRVDSQMGIERKSSF--WFWIAEKENEGCRHL 120
           V+EGMFVAYLYSVFVVLDAI NT+FFKSCRV S MG+E KSSF  W  +AEK+NEG  HL
Sbjct: 262 VLEGMFVAYLYSVFVVLDAIVNTMFFKSCRVGSLMGLEIKSSFCLWMGVAEKDNEGRPHL 321

Query: 121 KGFEELP 126
           KGFEELP
Sbjct: 322 KGFEELP 328

[Close]

BLAST of Chy2G047440 vs. ExPASy TrEMBL
Match: A0A6J1E2N9 (uncharacterized protein LOC111430030 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111430030 PE=4 SV=1)

HSP 1 Score: 186.8 bits (473), Expect = 5.5e-44
Identity = 98/127 (77.17%), Postives = 105/127 (82.68%), Query Frame = 0


Query: 1   MERKGGLMTLLKACVLIQGRSTTALLVTLPFNMGMAAIEALFQYRIVRDYHLRGKLEPSM 60
           MER GG M +LKACVLIQGRS TALLV LPFN+GMAA EALFQYRIVRDYH RG+L PSM
Sbjct: 229 MERNGGFMVILKACVLIQGRSATALLVALPFNLGMAATEALFQYRIVRDYHSRGRLGPSM 288

Query: 61  VVEGMFVAYLYSVFVVLDAIANTLFFKSCRVDSQMGIERKSSF--WFWIAEKENEGCRHL 120
           V+EGMFVAYLYSVFVVLDAI NT+FFKSC     MG E KSSF  W  +AEK+NEG  HL
Sbjct: 289 VLEGMFVAYLYSVFVVLDAIVNTMFFKSC----LMGPESKSSFCLWMGVAEKDNEGRPHL 348

Query: 121 KGFEELP 126
           KGFEELP
Sbjct: 349 KGFEELP 351

[Close]

BLAST of Chy2G047440 vs. NCBI nr
Match: XP_011660337.2 (uncharacterized protein LOC105436372 [Cucumis sativus])

HSP 1 Score: 241 bits (614), Expect = 6.38e-80
Identity = 119/125 (95.20%), Postives = 120/125 (96.00%), Query Frame = 0


Query: 1   MERKGGLMTLLKACVLIQGRSTTALLVTLPFNMGMAAIEALFQYRIVRDYHLRGKLEPSM 60
           MERKGG MTLLKACVLIQGRSTTALLVTLPFNMGMAA+EALFQYRIVRDYHLRGKLEPSM
Sbjct: 1   MERKGGFMTLLKACVLIQGRSTTALLVTLPFNMGMAAVEALFQYRIVRDYHLRGKLEPSM 60

Query: 61  VVEGMFVAYLYSVFVVLDAIANTLFFKSCRVDSQMGIERKSSFWFWIAEKENEGCRHLKG 120
           VVEGMFVAYLYSVFVVLDAI NTLFFKSCR DSQMGIERKSSFWFWIAEKENEG  HLKG
Sbjct: 61  VVEGMFVAYLYSVFVVLDAIVNTLFFKSCRADSQMGIERKSSFWFWIAEKENEGFHHLKG 120

Query: 121 FEELP 125
           FEELP
Sbjct: 121 FEELP 125

[Close]

BLAST of Chy2G047440 vs. NCBI nr
Match: XP_016901377.1 (PREDICTED: uncharacterized protein LOC103494010 [Cucumis melo] >KAA0057963.1 uncharacterized protein E6C27_scaffold274G002660 [Cucumis melo var. makuwa])

HSP 1 Score: 240 bits (613), Expect = 9.07e-80
Identity = 118/125 (94.40%), Postives = 120/125 (96.00%), Query Frame = 0


Query: 1   MERKGGLMTLLKACVLIQGRSTTALLVTLPFNMGMAAIEALFQYRIVRDYHLRGKLEPSM 60
           MERKGG M +LKACVLIQGRSTTALLV LPFN+GMAAIEALFQYRIVRDYHLRGKLEPSM
Sbjct: 1   MERKGGFMAVLKACVLIQGRSTTALLVALPFNIGMAAIEALFQYRIVRDYHLRGKLEPSM 60

Query: 61  VVEGMFVAYLYSVFVVLDAIANTLFFKSCRVDSQMGIERKSSFWFWIAEKENEGCRHLKG 120
           VVEGMFVAYLYSVFVVLDAI NTLFFKSCRVDSQMGIERKSSFWFWIAEKENEGC HLKG
Sbjct: 61  VVEGMFVAYLYSVFVVLDAIVNTLFFKSCRVDSQMGIERKSSFWFWIAEKENEGCHHLKG 120

Query: 121 FEELP 125
           FEELP
Sbjct: 121 FEELP 125

[Close]

BLAST of Chy2G047440 vs. NCBI nr
Match: KGN63693.1 (hypothetical protein Csa_013696 [Cucumis sativus])

HSP 1 Score: 241 bits (614), Expect = 9.29e-77
Identity = 119/125 (95.20%), Postives = 120/125 (96.00%), Query Frame = 0


Query: 1   MERKGGLMTLLKACVLIQGRSTTALLVTLPFNMGMAAIEALFQYRIVRDYHLRGKLEPSM 60
           MERKGG MTLLKACVLIQGRSTTALLVTLPFNMGMAA+EALFQYRIVRDYHLRGKLEPSM
Sbjct: 227 MERKGGFMTLLKACVLIQGRSTTALLVTLPFNMGMAAVEALFQYRIVRDYHLRGKLEPSM 286

Query: 61  VVEGMFVAYLYSVFVVLDAIANTLFFKSCRVDSQMGIERKSSFWFWIAEKENEGCRHLKG 120
           VVEGMFVAYLYSVFVVLDAI NTLFFKSCR DSQMGIERKSSFWFWIAEKENEG  HLKG
Sbjct: 287 VVEGMFVAYLYSVFVVLDAIVNTLFFKSCRADSQMGIERKSSFWFWIAEKENEGFHHLKG 346

Query: 121 FEELP 125
           FEELP
Sbjct: 347 FEELP 351

[Close]

BLAST of Chy2G047440 vs. NCBI nr
Match: XP_038879275.1 (uncharacterized protein LOC120071218 [Benincasa hispida])

HSP 1 Score: 207 bits (527), Expect = 1.18e-66
Identity = 106/125 (84.80%), Postives = 110/125 (88.00%), Query Frame = 0


Query: 1   MERKGGLMTLLKACVLIQGRSTTALLVTLPFNMGMAAIEALFQYRIVRDYHLRGKLEPSM 60
           MERKGG M +LKACVLIQGRS TALLV LPFN+GMAAIEALFQYRIVR YH RGKL  SM
Sbjct: 1   MERKGGFMAILKACVLIQGRSATALLVALPFNLGMAAIEALFQYRIVRVYHSRGKLGSSM 60

Query: 61  VVEGMFVAYLYSVFVVLDAIANTLFFKSCRVDSQMGIERKSSFWFWIAEKENEGCRHLKG 120
           VVEGMFVAYLYSVFVVLDAI NTLFFKSCRV S+MG+E KSSF FWIAEKENE   HLKG
Sbjct: 61  VVEGMFVAYLYSVFVVLDAIVNTLFFKSCRVGSRMGVEGKSSFSFWIAEKENEDFPHLKG 120

Query: 121 FEELP 125
           FEELP
Sbjct: 121 FEELP 125

[Close]

BLAST of Chy2G047440 vs. NCBI nr
Match: XP_022987512.1 (uncharacterized protein LOC111485055 [Cucurbita maxima])

HSP 1 Score: 199 bits (505), Expect = 1.41e-60
Identity = 101/127 (79.53%), Postives = 109/127 (85.83%), Query Frame = 0


Query: 1   MERKGGLMTLLKACVLIQGRSTTALLVTLPFNMGMAAIEALFQYRIVRDYHLRGKLEPSM 60
           MER GG M +LKACVLIQGRS TALLV LPFN+GMAA EALFQYRIVRDYH RG+L PSM
Sbjct: 202 MERNGGFMAILKACVLIQGRSATALLVALPFNLGMAATEALFQYRIVRDYHSRGRLGPSM 261

Query: 61  VVEGMFVAYLYSVFVVLDAIANTLFFKSCRVDSQMGIERKSSFWFW--IAEKENEGCRHL 120
           V+EGMFVAYLYSVFVVLDAI NT+FFKSCRV S MG+E KSSF  W  +AEK+NEG  HL
Sbjct: 262 VLEGMFVAYLYSVFVVLDAIVNTMFFKSCRVGSLMGLEIKSSFCLWMGVAEKDNEGRPHL 321

Query: 121 KGFEELP 125
           KGFEELP
Sbjct: 322 KGFEELP 328

[Close]

BLAST of Chy2G047440 vs. TAIR 10
Match: AT5G61340.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G26650.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 105.5 bits (262), Expect = 3.1e-23
Identity = 56/123 (45.53%), Postives = 83/123 (67.48%), Query Frame = 0


Query: 5   GGLMTLLKACVLIQGRSTTALLVTLPFNMGMAAIEALFQYRIVRDYHLRGKLEPSMVVEG 64
           GG   +LKAC+LI+GR++TA+ + LP N+G+A +EALFQYR++R Y+   +   S+ +EG
Sbjct: 201 GGYTNILKACLLIRGRNSTAMALALPTNLGLAGVEALFQYRVMRSYYNGDRDIISIALEG 260

Query: 65  MFVAYLYSVFVVLDAIANTLFFKSC---RVDSQMGIERKSSFWFWIAEKENEGCRHLKGF 124
            F+AYLY++F+VLD I N LF++SC     D  +G E + S    I+E EN    H+KG 
Sbjct: 261 TFIAYLYALFLVLDTIVNFLFYQSCIKNEEDQNIGREDEYSIKIQISETENTKI-HIKGS 320

[Close]

BLAST of Chy2G047440 vs. TAIR 10
Match: AT1G26650.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G69430.1); Has 205 Blast hits to 204 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 205; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 48.9 bits (115), Expect = 3.5e-06
Identity = 31/99 (31.31%), Postives = 54/99 (54.55%), Query Frame = 0


Query: 1   MERKGGLMTLLKACVLIQGRSTTALLVTLPFNMGMAAIEALFQYRIVRDYHLRGKLEPSM 60
           +E   GL  L++A  LI+G+    LL+ L   +G+A +E LF +R+ +  +  G    S 
Sbjct: 224 LEDVSGLGALMRASDLIKGQIQVGLLMFLGSTLGLAFVEGLFDHRVKKVSYGDGS---SR 283

Query: 61  VVEGMFVAYLYSVFVVLDAIANTLFFKSCRVDSQMGIER 100
           + EG  +  +YS   ++D++ + +F+ SCRV   M   R
Sbjct: 284 LWEGPLLVLMYSFVTLIDSMMSAVFYFSCRVYYSMEASR 319

The following BLAST results are available for this feature:

BLAST of Chy2G047440 vs.


Match Name	E-value	Identity	Description

BLAST of Chy2G047440 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LPF8	3.2e-60	95.20	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G011450 PE=4 SV=1	[more]
A0A5A7UQ15	4.2e-60	94.40	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A1S4DZG3	4.2e-60	94.40	uncharacterized protein LOC103494010 OS=Cucumis melo OX=3656 GN=LOC103494010 PE=...	[more]
A0A6J1JAK3	1.4e-47	79.53	uncharacterized protein LOC111485055 OS=Cucurbita maxima OX=3661 GN=LOC111485055...	[more]
A0A6J1E2N9	5.5e-44	77.17	uncharacterized protein LOC111430030 isoform X1 OS=Cucurbita moschata OX=3662 GN...	[more]

BLAST of Chy2G047440 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011660337.2	6.38e-80	95.20	uncharacterized protein LOC105436372 [Cucumis sativus]	[more]
XP_016901377.1	9.07e-80	94.40	PREDICTED: uncharacterized protein LOC103494010 [Cucumis melo] >KAA0057963.1 unc...	[more]
KGN63693.1	9.29e-77	95.20	hypothetical protein Csa_013696 [Cucumis sativus]	[more]
XP_038879275.1	1.18e-66	84.80	uncharacterized protein LOC120071218 [Benincasa hispida]	[more]
XP_022987512.1	1.41e-60	79.53	uncharacterized protein LOC111485055 [Cucurbita maxima]	[more]

BLAST of Chy2G047440 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G61340.1	3.1e-23	45.53	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT1G26650.1	3.5e-06	31.31	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33133:SF3	TRANSMEMBRANE PROTEIN	coord: 1..123
None	No IPR available	PANTHER	PTHR33133	OS08G0107100 PROTEIN-RELATED	coord: 1..123

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy2G047440.1	Chy2G047440.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane